Miyakogusa Predicted Gene

Lj2g3v2017400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v2017400.1 Non Characterized Hit- tr|A5AK61|A5AK61_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,35.52,0.000000000000002, ,CUFF.38419.1
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g096860.1 | hypothetical protein | HC | chr8:40659847-4065...   120   5e-28

>Medtr8g096860.1 | hypothetical protein | HC |
           chr8:40659847-40658448 | 20130731
          Length = 154

 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/154 (47%), Positives = 88/154 (57%), Gaps = 17/154 (11%)

Query: 4   LEISMVSVEGLGKYSS------SYFITLTNLSNHLVYSYDGGGAEEHMFRVPVDHTFFFD 57
           LE++++S EGL  Y+S        FITLT        +        +MF VP+D TFF D
Sbjct: 5   LELTLISTEGLNNYTSYLNPTIKPFITLTKFPPA-TSTPPKACDNINMFHVPLDPTFFSD 63

Query: 58  TQHSSLQLHLYNKRRILGPTQLGWCMIPALDIGFLNLRDSAAVRYLSYRLRATDGCRSDI 117
              S L L ++ KRRI+G  QLGWC IPA DIG L      +VRYLSYRLR  DG R   
Sbjct: 64  -PSSCLYLQVFTKRRIMGQAQLGWCFIPASDIGLLT---PGSVRYLSYRLRGKDGSRGHA 119

Query: 118 IINLSVKLL------GSPDTCQTVIGIPVTAVRG 145
           IIN+SV+L        + DTC TVIGIPVT  RG
Sbjct: 120 IINISVRLEITTLMSSNMDTCHTVIGIPVTTFRG 153