Miyakogusa Predicted Gene

Lj2g3v1718710.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1718710.1 tr|A0FK50|A0FK50_CHLRE Chloroplast Rat1
OS=Chlamydomonas reinhardtii GN=RAT1 PE=4
SV=1,38.84,3e-19,UNCHARACTERIZED,Coiled-coil domain-containing protein
90; UNCHARACTERIZED,NULL; coiled-coil,NULL; DU,CUFF.37723.1
         (129 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g021410.2 | FMP32 | HC | chr5:8272412-8267929 | 20130731        253   3e-68
Medtr5g021410.1 | FMP32 | HC | chr5:8272412-8267885 | 20130731        253   3e-68
Medtr8g076260.1 | FMP32 | HC | chr8:32297241-32301590 | 20130731      248   1e-66
Medtr3g117390.1 | FMP32 | HC | chr3:54941853-54938430 | 20130731      222   7e-59
Medtr5g021410.3 | FMP32 | HC | chr5:8272412-8267892 | 20130731        136   6e-33
Medtr5g021410.5 | FMP32 | HC | chr5:8272412-8267929 | 20130731         97   3e-21
Medtr5g021410.4 | FMP32 | HC | chr5:8272412-8267929 | 20130731         97   3e-21

>Medtr5g021410.2 | FMP32 | HC | chr5:8272412-8267929 | 20130731
          Length = 233

 Score =  253 bits (646), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/129 (96%), Positives = 125/129 (96%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQRTEM QEANLSKFK EVQSSQGHHFSLLQHETEKL+NDIEKMRSELRYEIDKVTAGQR
Sbjct: 105 MQRTEMQQEANLSKFKTEVQSSQGHHFSLLQHETEKLKNDIEKMRSELRYEIDKVTAGQR 164

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAV 120
           LDLNLERGRIREEL NQNAETNNLTNKLDREIHALRA LEAAKYDVIKYCIGTLVSISAV
Sbjct: 165 LDLNLERGRIREELTNQNAETNNLTNKLDREIHALRAQLEAAKYDVIKYCIGTLVSISAV 224

Query: 121 GLAVLRILM 129
           GLAVLRILM
Sbjct: 225 GLAVLRILM 233


>Medtr5g021410.1 | FMP32 | HC | chr5:8272412-8267885 | 20130731
          Length = 233

 Score =  253 bits (646), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/129 (96%), Positives = 125/129 (96%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQRTEM QEANLSKFK EVQSSQGHHFSLLQHETEKL+NDIEKMRSELRYEIDKVTAGQR
Sbjct: 105 MQRTEMQQEANLSKFKTEVQSSQGHHFSLLQHETEKLKNDIEKMRSELRYEIDKVTAGQR 164

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAV 120
           LDLNLERGRIREEL NQNAETNNLTNKLDREIHALRA LEAAKYDVIKYCIGTLVSISAV
Sbjct: 165 LDLNLERGRIREELTNQNAETNNLTNKLDREIHALRAQLEAAKYDVIKYCIGTLVSISAV 224

Query: 121 GLAVLRILM 129
           GLAVLRILM
Sbjct: 225 GLAVLRILM 233


>Medtr8g076260.1 | FMP32 | HC | chr8:32297241-32301590 | 20130731
          Length = 241

 Score =  248 bits (632), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/129 (91%), Positives = 127/129 (98%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQ+TEM+QE+NLSKFK+EVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYE+DKVTAGQR
Sbjct: 113 MQKTEMIQESNLSKFKSEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEMDKVTAGQR 172

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAV 120
           LDLNLERGR REEL+NQ+AETNNLTNKLDREIH+LRA LEAAKY+VIKYCIGTLVSISAV
Sbjct: 173 LDLNLERGRTREELSNQSAETNNLTNKLDREIHSLRAQLEAAKYEVIKYCIGTLVSISAV 232

Query: 121 GLAVLRILM 129
           GLAVLRILM
Sbjct: 233 GLAVLRILM 241


>Medtr3g117390.1 | FMP32 | HC | chr3:54941853-54938430 | 20130731
          Length = 226

 Score =  222 bits (565), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/129 (82%), Positives = 120/129 (93%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQ++EM+QE+NLSKFK+EV++SQ HHFSLLQ ETEKLRNDI+KMR+ELRYEIDKVTAGQR
Sbjct: 98  MQKSEMMQESNLSKFKSEVKTSQEHHFSLLQRETEKLRNDIDKMRTELRYEIDKVTAGQR 157

Query: 61  LDLNLERGRIREELANQNAETNNLTNKLDREIHALRAHLEAAKYDVIKYCIGTLVSISAV 120
           LDLNLER RI++ELA QN ET NLTNKLDREIHALRA LEAAKYDVIKYCIGTLVSISAV
Sbjct: 158 LDLNLERRRIQDELATQNTETTNLTNKLDREIHALRAQLEAAKYDVIKYCIGTLVSISAV 217

Query: 121 GLAVLRILM 129
           GL V+ I++
Sbjct: 218 GLTVICIIL 226


>Medtr5g021410.3 | FMP32 | HC | chr5:8272412-8267892 | 20130731
          Length = 172

 Score =  136 bits (342), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/68 (95%), Positives = 66/68 (97%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELRYEIDKVTAGQR 60
           MQRTEM QEANLSKFK EVQSSQGHHFSLLQHETEKL+NDIEKMRSELRYEIDKVTAGQR
Sbjct: 105 MQRTEMQQEANLSKFKTEVQSSQGHHFSLLQHETEKLKNDIEKMRSELRYEIDKVTAGQR 164

Query: 61  LDLNLERG 68
           LDLNLERG
Sbjct: 165 LDLNLERG 172


>Medtr5g021410.5 | FMP32 | HC | chr5:8272412-8267929 | 20130731
          Length = 173

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELR 49
           MQRTEM QEANLSKFK EVQSSQGHHFSLLQHETEKL+NDIEKMRSELR
Sbjct: 105 MQRTEMQQEANLSKFKTEVQSSQGHHFSLLQHETEKLKNDIEKMRSELR 153


>Medtr5g021410.4 | FMP32 | HC | chr5:8272412-8267929 | 20130731
          Length = 173

 Score = 97.1 bits (240), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/49 (93%), Positives = 47/49 (95%)

Query: 1   MQRTEMLQEANLSKFKAEVQSSQGHHFSLLQHETEKLRNDIEKMRSELR 49
           MQRTEM QEANLSKFK EVQSSQGHHFSLLQHETEKL+NDIEKMRSELR
Sbjct: 105 MQRTEMQQEANLSKFKTEVQSSQGHHFSLLQHETEKLKNDIEKMRSELR 153