Miyakogusa Predicted Gene

Lj2g3v1155210.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1155210.1 tr|G7JX88|G7JX88_MEDTR COSII OS=Medicago
truncatula GN=MTR_5g057670 PE=2 SV=1,89.68,0,SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; DUF1218,Protein of unknown function DUF1218;
seg,NU,NODE_34354_length_674_cov_168.973297.path2.1
         (155 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g057670.1 | fiber protein Fb34 | HC | chr5:23809011-238049...   271   2e-73
Medtr5g057335.1 | fiber protein Fb34 | HC | chr5:23649474-236539...   271   2e-73
Medtr4g089100.2 | fiber protein Fb34 | HC | chr4:35730320-357252...   137   4e-33
Medtr4g089100.1 | fiber protein Fb34 | HC | chr4:35730302-357253...   137   4e-33
Medtr4g089100.3 | fiber protein Fb34 | HC | chr4:35730320-357252...   137   4e-33
Medtr4g089100.4 | fiber protein Fb34 | HC | chr4:35730343-357252...   137   4e-33
Medtr2g079830.1 | fiber protein Fb34 | HC | chr2:33645377-336429...   116   1e-26
Medtr1g109660.1 | fiber protein Fb34 | HC | chr1:49605079-496023...   114   3e-26
Medtr1g109700.1 | fiber protein Fb34 | LC | chr1:49614965-496128...    96   2e-20
Medtr4g077250.1 | transmembrane protein, putative | HC | chr4:29...    47   6e-06

>Medtr5g057670.1 | fiber protein Fb34 | HC | chr5:23809011-23804986
           | 20130731
          Length = 191

 Score =  271 bits (693), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 137/155 (88%)

Query: 1   MYQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSI 60
           +++  G NETYCVYSSDVATGYGVGA           MGVTKCMCFGRPLTPGGNRAWSI
Sbjct: 37  IHKTPGTNETYCVYSSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSI 96

Query: 61  IYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATM 120
           IYF+SSWATFLVAESCLIAGA KNAYHTKYRG+IYAQNFSCESLRKGIF+T A+FIV TM
Sbjct: 97  IYFLSSWATFLVAESCLIAGAKKNAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTM 156

Query: 121 ILNVYYYMYFTKATTTPLSQKANRVSSTVGMTGYA 155
           +LNVYYYMYFTKATTTPLSQK NRVSSTVGMTGYA
Sbjct: 157 VLNVYYYMYFTKATTTPLSQKTNRVSSTVGMTGYA 191


>Medtr5g057335.1 | fiber protein Fb34 | HC | chr5:23649474-23653955
           | 20130731
          Length = 191

 Score =  271 bits (693), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/155 (83%), Positives = 137/155 (88%)

Query: 1   MYQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSI 60
           +++  G NETYCVYSSDVATGYGVGA           MGVTKCMCFGRPLTPGGNRAWSI
Sbjct: 37  IHKTPGTNETYCVYSSDVATGYGVGAFLFLLSGESLLMGVTKCMCFGRPLTPGGNRAWSI 96

Query: 61  IYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATM 120
           IYF+SSWATFLVAESCLIAGA KNAYHTKYRG+IYAQNFSCESLRKGIF+T A+FIV TM
Sbjct: 97  IYFLSSWATFLVAESCLIAGAKKNAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTM 156

Query: 121 ILNVYYYMYFTKATTTPLSQKANRVSSTVGMTGYA 155
           +LNVYYYMYFTKATTTPLSQK NRVSSTVGMTGYA
Sbjct: 157 VLNVYYYMYFTKATTTPLSQKTNRVSSTVGMTGYA 191


>Medtr4g089100.2 | fiber protein Fb34 | HC | chr4:35730320-35725261
           | 20130731
          Length = 183

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 89/131 (67%), Gaps = 2/131 (1%)

Query: 3   QVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIY 62
            +EG+   YC Y SD+ATG GVG+           M VT+C+C GR + P G+R+W+I  
Sbjct: 36  NIEGRK--YCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICL 93

Query: 63  FMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMIL 122
           F+++W TFL+A SCL+AG+ KNAYHTKYR ++  +  SC++LRKG+F   A FIV T I+
Sbjct: 94  FITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIV 153

Query: 123 NVYYYMYFTKA 133
           +  YY+ F+KA
Sbjct: 154 SELYYVSFSKA 164


>Medtr4g089100.1 | fiber protein Fb34 | HC | chr4:35730302-35725376
           | 20130731
          Length = 183

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 89/131 (67%), Gaps = 2/131 (1%)

Query: 3   QVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIY 62
            +EG+   YC Y SD+ATG GVG+           M VT+C+C GR + P G+R+W+I  
Sbjct: 36  NIEGRK--YCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICL 93

Query: 63  FMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMIL 122
           F+++W TFL+A SCL+AG+ KNAYHTKYR ++  +  SC++LRKG+F   A FIV T I+
Sbjct: 94  FITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIV 153

Query: 123 NVYYYMYFTKA 133
           +  YY+ F+KA
Sbjct: 154 SELYYVSFSKA 164


>Medtr4g089100.3 | fiber protein Fb34 | HC | chr4:35730320-35725261
           | 20130731
          Length = 183

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 89/131 (67%), Gaps = 2/131 (1%)

Query: 3   QVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIY 62
            +EG+   YC Y SD+ATG GVG+           M VT+C+C GR + P G+R+W+I  
Sbjct: 36  NIEGRK--YCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICL 93

Query: 63  FMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMIL 122
           F+++W TFL+A SCL+AG+ KNAYHTKYR ++  +  SC++LRKG+F   A FIV T I+
Sbjct: 94  FITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIV 153

Query: 123 NVYYYMYFTKA 133
           +  YY+ F+KA
Sbjct: 154 SELYYVSFSKA 164


>Medtr4g089100.4 | fiber protein Fb34 | HC | chr4:35730343-35725261
           | 20130731
          Length = 183

 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 89/131 (67%), Gaps = 2/131 (1%)

Query: 3   QVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIY 62
            +EG+   YC Y SD+ATG GVG+           M VT+C+C GR + P G+R+W+I  
Sbjct: 36  NIEGRK--YCQYDSDIATGLGVGSLFILVASQVIIMVVTRCLCCGRAMRPSGSRSWAICL 93

Query: 63  FMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMIL 122
           F+++W TFL+A SCL+AG+ KNAYHTKYR ++  +  SC++LRKG+F   A FIV T I+
Sbjct: 94  FITTWLTFLIAASCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIV 153

Query: 123 NVYYYMYFTKA 133
           +  YY+ F+KA
Sbjct: 154 SELYYVSFSKA 164


>Medtr2g079830.1 | fiber protein Fb34 | HC | chr2:33645377-33642906
           | 20130731
          Length = 186

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 85/132 (64%)

Query: 5   EGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIYFM 64
           + +N  YCVY SD ATGYGV A           M V++C C G+PL PGG+RA +I+ F+
Sbjct: 37  KEQNYNYCVYDSDRATGYGVVAFLFLMISQIVIMVVSRCFCCGKPLKPGGSRACAIVLFI 96

Query: 65  SSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMILNV 124
             W  F++AE CL+AG+ +NAYHTKYR +  +   SCE++RKG+F   A F+  T I++ 
Sbjct: 97  VCWVFFIIAEVCLLAGSVENAYHTKYRTLFVSDPPSCETVRKGVFAAGAAFVFFTSIVSK 156

Query: 125 YYYMYFTKATTT 136
           +YY+ ++ A  +
Sbjct: 157 FYYINYSSARES 168


>Medtr1g109660.1 | fiber protein Fb34 | HC | chr1:49605079-49602362
           | 20130731
          Length = 193

 Score =  114 bits (285), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 79/140 (56%)

Query: 5   EGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIYFM 64
           E    T+CVY++D +T YGV A             VT+C+C G+ L  G +   ++I+F+
Sbjct: 38  EYDERTFCVYTTDASTVYGVAAFSLLLLSQTVLNAVTRCLCCGKGLISGCSTTCAVIFFI 97

Query: 65  SSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMILNV 124
            SW  FL AE+CL+AG+ +NAYHTKYRG     + SC +LRKG+F   A   + +M+ ++
Sbjct: 98  LSWTGFLAAEACLLAGSARNAYHTKYRGNFVTHDLSCATLRKGVFAAGAALTLFSMLASI 157

Query: 125 YYYMYFTKATTTPLSQKANR 144
            YY    KA T    +  N 
Sbjct: 158 LYYWAHAKADTGFWEKHQNE 177


>Medtr1g109700.1 | fiber protein Fb34 | LC | chr1:49614965-49612840
           | 20130731
          Length = 190

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 75/131 (57%)

Query: 3   QVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRPLTPGGNRAWSIIY 62
           ++   + T CVY++D +T YG  A             +T+C C G+ L PG + + +II 
Sbjct: 34  ELPNDDGTICVYTTDASTFYGFVAFSFLLVNQVFLNLITRCFCCGKGLVPGRSTSCAIIC 93

Query: 63  FMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATMIL 122
           ++ SW  FL AE+CL+ G+T +AY TKY+G       SC +LRKG+F   AV  + +M+ 
Sbjct: 94  YILSWIGFLAAEACLLVGSTTSAYKTKYQGYYSTLGLSCSALRKGVFAVGAVLTLFSMLT 153

Query: 123 NVYYYMYFTKA 133
           ++ YY  + KA
Sbjct: 154 SILYYWAYCKA 164


>Medtr4g077250.1 | transmembrane protein, putative | HC |
           chr4:29600281-29602521 | 20130731
          Length = 211

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 5/153 (3%)

Query: 2   YQVEGKNETYCVYSSDVATGYGVGAXXXXXXXXXXXMGVTKCMCFGRP-LTPGGNRAWSI 60
           YQ++  N   C+Y    A   G+ A              T C+C  +    P  N   ++
Sbjct: 34  YQIQFINPNQCIYPRSPALPLGLTAALSLMISQIVINVSTGCICCRKSSRIPDSNWTVAL 93

Query: 61  IYFMSSWATFLVAESCLIAGATKNAYHTKYRGMIYAQNFSCESLRKGIFVTAAVFIVATM 120
             F+ SW T+++A   L+ GA  N    +    +Y   + C  ++ G+F   A+  +A++
Sbjct: 94  ACFVLSWFTYVIAFLLLLTGAALN--DQRGEESVYFGTYYCYVVKPGVFAGGAILSLASV 151

Query: 121 ILNVYYYMYFT--KATTTPLSQKANRVSSTVGM 151
           +  + YY+     K   TP    +     T+ M
Sbjct: 152 VFGIVYYITLMEGKNARTPFGDSSYPNQGTIAM 184