Miyakogusa Predicted Gene

Lj2g3v1119550.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1119550.1 Non Characterized Hit- tr|I1MEN1|I1MEN1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57429
PE,81.03,0,GCD14,tRNA (adenine(58)-N(1))-methyltransferase catalytic
subunit GCD14; SUBFAMILY NOT NAMED,NULL; U,CUFF.36282.1
         (309 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g047800.2 | tRNA methyltransferase complex GCD14 subunit |...   477   e-135
Medtr6g047800.1 | tRNA methyltransferase complex GCD14 subunit |...   469   e-132
Medtr2g014590.1 | tRNA methyltransferase complex GCD14 subunit |...   360   e-100
Medtr2g014570.1 | tRNA methyltransferase complex GCD14 subunit |...    91   2e-18

>Medtr6g047800.2 | tRNA methyltransferase complex GCD14 subunit | HC
           | chr6:17240555-17244407 | 20130731
          Length = 309

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/309 (77%), Positives = 264/309 (85%), Gaps = 3/309 (0%)

Query: 1   MLAGDPAKRISFNRCIRNGDLVIVYERHDSMKAVTVAEGSVLQNRFGVFKYSDWIGKPFG 60
           MLA D  +++SFNR I NGDL IVY RHD+MK VTV+EGSVLQNRFGVFK+SDWIGK FG
Sbjct: 1   MLAIDSTRKMSFNRTISNGDLAIVYARHDNMKPVTVSEGSVLQNRFGVFKHSDWIGKSFG 60

Query: 61  SKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCLVXXXXXXXX 120
           SKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPG +V        
Sbjct: 61  SKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGFVVLESGTGSG 120

Query: 121 XXXXXXARAVAPAGHVHTFDFHEQRAASARDDFQRTGLSNLVRVGVRDIQGQGFPDDFAG 180
                 ARAVAP GHV+TFDFHEQR+ SARDDF++ G+S+LV  GVRDIQG+GFP++FAG
Sbjct: 121 SLTTSLARAVAPTGHVYTFDFHEQRSGSARDDFEKIGISSLVTAGVRDIQGEGFPEEFAG 180

Query: 181 LADAVFLDLPQPWLAIPSAAKMLKQDGTLCSFSPCIEQVQRSCETLRTSFTDIRTFEVLL 240
           LADAVFLDLPQPWLAIPSAAKML+ DGTLCSFSPCIEQVQRSCET++++FTDIRTFEVLL
Sbjct: 181 LADAVFLDLPQPWLAIPSAAKMLRHDGTLCSFSPCIEQVQRSCETMQSNFTDIRTFEVLL 240

Query: 241 RTYEVGEGKMERLQENG-KGSNGSL-PCKRRQCSDGG-YVLSSNISSVVAKPCGEARGHT 297
           RTYEV EGKME L+ +G  GSNGSL PCKRRQ SDG   V   + SSV+A+PCGEARGHT
Sbjct: 241 RTYEVREGKMESLEIDGDDGSNGSLPPCKRRQRSDGASVVSYPSSSSVMARPCGEARGHT 300

Query: 298 GYLTFARLK 306
           GYLTFARL 
Sbjct: 301 GYLTFARLN 309


>Medtr6g047800.1 | tRNA methyltransferase complex GCD14 subunit | HC
           | chr6:17241702-17244129 | 20130731
          Length = 300

 Score =  469 bits (1206), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/300 (78%), Positives = 258/300 (86%), Gaps = 3/300 (1%)

Query: 10  ISFNRCIRNGDLVIVYERHDSMKAVTVAEGSVLQNRFGVFKYSDWIGKPFGSKVFSNKGG 69
           +SFNR I NGDL IVY RHD+MK VTV+EGSVLQNRFGVFK+SDWIGK FGSKVFSNKGG
Sbjct: 1   MSFNRTISNGDLAIVYARHDNMKPVTVSEGSVLQNRFGVFKHSDWIGKSFGSKVFSNKGG 60

Query: 70  FVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCLVXXXXXXXXXXXXXXARA 129
           FVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPG +V              ARA
Sbjct: 61  FVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGFVVLESGTGSGSLTTSLARA 120

Query: 130 VAPAGHVHTFDFHEQRAASARDDFQRTGLSNLVRVGVRDIQGQGFPDDFAGLADAVFLDL 189
           VAP GHV+TFDFHEQR+ SARDDF++ G+S+LV  GVRDIQG+GFP++FAGLADAVFLDL
Sbjct: 121 VAPTGHVYTFDFHEQRSGSARDDFEKIGISSLVTAGVRDIQGEGFPEEFAGLADAVFLDL 180

Query: 190 PQPWLAIPSAAKMLKQDGTLCSFSPCIEQVQRSCETLRTSFTDIRTFEVLLRTYEVGEGK 249
           PQPWLAIPSAAKML+ DGTLCSFSPCIEQVQRSCET++++FTDIRTFEVLLRTYEV EGK
Sbjct: 181 PQPWLAIPSAAKMLRHDGTLCSFSPCIEQVQRSCETMQSNFTDIRTFEVLLRTYEVREGK 240

Query: 250 MERLQENG-KGSNGSL-PCKRRQCSDGG-YVLSSNISSVVAKPCGEARGHTGYLTFARLK 306
           ME L+ +G  GSNGSL PCKRRQ SDG   V   + SSV+A+PCGEARGHTGYLTFARL 
Sbjct: 241 MESLEIDGDDGSNGSLPPCKRRQRSDGASVVSYPSSSSVMARPCGEARGHTGYLTFARLN 300


>Medtr2g014590.1 | tRNA methyltransferase complex GCD14 subunit | HC
           | chr2:4205476-4203960 | 20130731
          Length = 237

 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/231 (73%), Positives = 192/231 (83%)

Query: 1   MLAGDPAKRISFNRCIRNGDLVIVYERHDSMKAVTVAEGSVLQNRFGVFKYSDWIGKPFG 60
           +L  +P K I+FNR I +G+LVIVY +H +MKAVTV+EGSV QN  G FK+SDWIGKPFG
Sbjct: 2   LLTSNPEKTIAFNRKIHDGNLVIVYVKHGNMKAVTVSEGSVFQNSLGAFKHSDWIGKPFG 61

Query: 61  SKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCLVXXXXXXXX 120
           SKVF+NKG FVYLLAPTPELWTLVL+HRTQILYI DISFV+MYLEIV GCLV        
Sbjct: 62  SKVFNNKGDFVYLLAPTPELWTLVLNHRTQILYIPDISFVIMYLEIVAGCLVLESGTGSG 121

Query: 121 XXXXXXARAVAPAGHVHTFDFHEQRAASARDDFQRTGLSNLVRVGVRDIQGQGFPDDFAG 180
                 ARA+AP GHV+TFDFHEQRAASARDDF+R GLS+L+  GVRDIQG+GFPD+   
Sbjct: 122 SLTTSLARAIAPNGHVYTFDFHEQRAASARDDFERIGLSSLISCGVRDIQGEGFPDELNE 181

Query: 181 LADAVFLDLPQPWLAIPSAAKMLKQDGTLCSFSPCIEQVQRSCETLRTSFT 231
           LAD+VFLDLPQPWLAIPSAAKMLKQDGT CSFSPCIEQVQRSC+ L++ FT
Sbjct: 182 LADSVFLDLPQPWLAIPSAAKMLKQDGTFCSFSPCIEQVQRSCDALQSCFT 232


>Medtr2g014570.1 | tRNA methyltransferase complex GCD14 subunit | HC
           | chr2:4202155-4201903 | 20130731
          Length = 66

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 44/49 (89%)

Query: 261 NGSLPCKRRQCSDGGYVLSSNISSVVAKPCGEARGHTGYLTFARLKCLS 309
           NGSLPCKRRQCSDG YVLS+  SSV+A+PC EARGHTGYLTFARLKC S
Sbjct: 18  NGSLPCKRRQCSDGNYVLSNPTSSVMARPCDEARGHTGYLTFARLKCFS 66