Miyakogusa Predicted Gene

Lj2g3v1019890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1019890.1 Non Characterized Hit- tr|B9RUE6|B9RUE6_RICCO
Nuclease, putative OS=Ricinus communis
GN=RCOM_0852190,57.5,0,Ribonuclease H-like,Ribonuclease H-like domain;
RNASE_H,Ribonuclease H domain; RETROELEMENT POL POLY,CUFF.35942.1
         (285 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g052720.1 | organelle transcript processing protein, putat...    48   8e-06

>Medtr3g052720.1 | organelle transcript processing protein, putative |
            HC | chr3:20868148-20864227 | 20130731
          Length = 1150

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 22/125 (17%)

Query: 149  FDGASKGNPGPAGAGAVLRADDGSKVYRLREGVGTQTNNFAEYRGLILGLKHAIKEGYKH 208
             DGA  G+PG +  G + R   G  +    E +G QT+ +AE  G I  ++ A  + ++ 
Sbjct: 1018 IDGAVLGSPGQSSCGGLFRDSSGVCIGCFAENLGVQTDFYAELMGAINAIEIASSKNWQS 1077

Query: 209  IQVKGDSMLVCNQVQGLWKIKNQNIASLCSEAKELKNKFLSFKINHIPREYNSEADVQAN 268
            + ++ +S LV              IAS  S   +++N           RE NS AD  AN
Sbjct: 1078 LWLETESKLV-----------QMAIASTLSIPWQIRN-----------REGNSCADKLAN 1115

Query: 269  FGISL 273
             G+SL
Sbjct: 1116 IGVSL 1120