Miyakogusa Predicted Gene

Lj2g3v0914150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0914150.1 tr|B9MVJ8|B9MVJ8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_781481 PE=4
SV=1,25.66,2e-18,SSB,Primosome PriB/single-strand DNA-binding; no
description,Nucleic acid-binding, OB-fold; Nucleic
,NODE_55840_length_1530_cov_48.152287.path1.1
         (416 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g092780.1 | organellar single-stranded DNA-binding protein...   379   e-105
Medtr1g070840.1 | single-stranded DNA-binding protein | HC | chr...    97   4e-20
Medtr1g021080.1 | organellar single-stranded DNA-binding protein...    79   1e-14

>Medtr6g092780.1 | organellar single-stranded DNA-binding protein |
           HC | chr6:34938025-34943859 | 20130731
          Length = 490

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/372 (54%), Positives = 255/372 (68%), Gaps = 24/372 (6%)

Query: 41  KPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGNPWASTVLTRQDSPSSPFLWIPVIFEG 100
           KPTEIPFQPKLAN+VNLIG V+ P+ FQTS DGNP A+TV+TR     S FL IP++F G
Sbjct: 67  KPTEIPFQPKLANSVNLIGTVNKPIHFQTSTDGNPSAATVITRLGHDPSQFL-IPLVFHG 125

Query: 101 DLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQVKNISE 160
           DLA  A  HLK NDVVH+ GQLST+   +    P Q  FQV VQSLNFV+ YP+VK  S 
Sbjct: 126 DLALTAQFHLKLNDVVHVEGQLSTEDDQIKLDKPQQYQFQVKVQSLNFVEGYPRVKKASL 185

Query: 161 TPKQKVVSVSETEEHGVNPWTKSIHSKQSEEHDIDKSWKDLLNNPSEWWDVRSAKENPKG 220
           T K+K     E+E   +    K IHS+++E+HD  KSW+D++N PS+W  V S KE+PK 
Sbjct: 186 TSKEKSDIEDESENDEIKSSEKDIHSEKTEQHDTRKSWRDVINKPSQWKAVHSPKESPKN 245

Query: 221 AAFERKTNRELVFIDSSTPKWLQEKLESMTIDLKPELKHTITSAKKDPGSLLSSWRDLLN 280
           A FE KT  EL                      +P LK + TSAKK  GSL S+W DLL+
Sbjct: 246 ADFESKTEGEL----------------------QPGLKQSTTSAKKYTGSLSSTWGDLLD 283

Query: 281 NPKQWFDFRDSKLNGLVNPRYPDFKCKDGSTALWLDRAPKWFLSELKGLKVDIPVVKTKK 340
           +PK+W+DFRDSK NG VNP+YPDFK KDG+ ++WLD+A K  LS LK L+ D P VK K+
Sbjct: 284 DPKKWWDFRDSKRNGSVNPKYPDFKRKDGNVSIWLDKASKSVLSRLKELEFDTPPVKPKQ 343

Query: 341 EKDGKGDQSWNDLVENPAKWWDNRLNKRNVKAPDFKHKETGVGLWVDASPNWVLPKLPPV 400
            KD KGD+SWNDL++NPAKWWDNR++K+  +APDFKHK+TGVGLW+  SP+WV  +L  +
Sbjct: 344 TKDSKGDESWNDLLQNPAKWWDNRVDKKYARAPDFKHKDTGVGLWLRDSPSWVSSRLKEL 403

Query: 401 KLEQSVPTSSKQ 412
           ++E S    SKQ
Sbjct: 404 EVE-STSVKSKQ 414


>Medtr1g070840.1 | single-stranded DNA-binding protein | HC |
           chr1:31376098-31372434 | 20130731
          Length = 291

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 115/218 (52%), Gaps = 17/218 (7%)

Query: 40  PKPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGNPWASTVLTRQDSPSSPFLWIPVIFE 99
           PKP EI +   L+N+VNLIG V +P++ +  P G   A T L+ + + +S   WI + F 
Sbjct: 64  PKPPEISWNKDLSNSVNLIGFVANPIEIKHLPSGKVVAWTRLSVKKN-ASQMSWIHLTFW 122

Query: 100 GDLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQVKNIS 159
            +LAH A  H++    +H++G+L TD    +     Q+ ++V+ Q LNF+       + S
Sbjct: 123 DELAHVASQHVQKGHQIHVSGRLVTDTVD-SVDGKQQTYYKVVAQQLNFI-------DRS 174

Query: 160 ETPKQ---KVVSVSETEEHGVNPWTKSIHSKQSEEHDIDKSWKDLLNNPSEWWDVRSAKE 216
           ++P +   +      ++++G     K+ ++       + + W+    NP EWWD R  K 
Sbjct: 175 DSPVRSHDQDFDFITSDDNG----KKASYATNGMTGSVVELWQAFFANPGEWWDNRRNKR 230

Query: 217 NPKGAAFERKTNRELVFIDS-STPKWLQEKLESMTIDL 253
           NPK   F+ K   E ++ID  STP W++ +LE + + +
Sbjct: 231 NPKAPDFKHKDTGEALWIDGRSTPPWVKSQLEILDMRM 268



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 350 WNDLVENPAKWWDNRLNKRNVKAPDFKHKETGVGLWVD--ASPNWVLPKLPPVKLEQSVP 407
           W     NP +WWDNR NKRN KAPDFKHK+TG  LW+D  ++P WV  +L  + +     
Sbjct: 212 WQAFFANPGEWWDNRRNKRNPKAPDFKHKDTGEALWIDGRSTPPWVKSQLEILDMRMGSY 271

Query: 408 TS 409
           T 
Sbjct: 272 TG 273


>Medtr1g021080.1 | organellar single-stranded DNA-binding protein |
           HC | chr1:6250091-6256004 | 20130731
          Length = 268

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 24/209 (11%)

Query: 41  KPTEIPFQPKLANAVNLIGQVHSPLQFQTSPDGNPWASTVLTRQDSPSSPFLWIPVIFEG 100
           +P  I ++P+L N+ + IG V   ++   S  G+    T L  Q    SPF W+ ++   
Sbjct: 61  RPATIRWKPRLENSASFIGSVAREVKHVNSKFGDFGVYTTLRVQKPDRSPF-WVLLMMWN 119

Query: 101 DLAHAAVSHLKPNDVVHIAGQLSTDPPHLNGHAPAQSNFQVMVQSLNFVQDYPQVKNISE 160
           ++A  A  HLKPND++ ++G L +     +G++     +++MV+ LNFV      ++  +
Sbjct: 120 NVAEIAYEHLKPNDLICVSGYLDS----FDGNSDL--GYKLMVKELNFVARSLGYEDHEK 173

Query: 161 TPKQKVVSVSETEEHGVNPWTKSIHSKQSEEHDIDKSWKDLLNNPSEWWDVRSAKENPKG 220
             K       E  + G   +   +H            W+    NP+EWWD R  K NPK 
Sbjct: 174 EHK------FEGAKAGNQNYGNPLH-----------LWQVFFANPNEWWDQRKNKLNPKQ 216

Query: 221 AAFERKTNRELVFIDSSTPKWLQEKLESM 249
             F+ K   E +++    P W+ ++L+ +
Sbjct: 217 PDFKHKDTGEALWLSKHNPPWVTKQLKLL 245



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 350 WNDLVENPAKWWDNRLNKRNVKAPDFKHKETGVGLWVDA-SPNWVLPKL 397
           W     NP +WWD R NK N K PDFKHK+TG  LW+   +P WV  +L
Sbjct: 194 WQVFFANPNEWWDQRKNKLNPKQPDFKHKDTGEALWLSKHNPPWVTKQL 242