Miyakogusa Predicted Gene

Lj2g3v0721170.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v0721170.1 Non Characterized Hit- tr|D8T1W0|D8T1W0_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,67.24,1e-18,SUBFAMILY NOT NAMED,NULL;
AMSH,NULL,CUFF.35309.1
         (61 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g083940.1 | AMSH-like ubiquitin thioesterase | HC | chr6:3...   130   3e-31
Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC | chr8:4...    94   3e-20
Medtr8g104310.2 | AMSH-like ubiquitin thioesterase | HC | chr8:4...    92   7e-20
Medtr4g121470.1 | AMSH-like ubiquitin thioesterase-like protein ...    90   5e-19
Medtr5g034240.1 | AMSH-like ubiquitin thioesterase | HC | chr5:1...    80   4e-16

>Medtr6g083940.1 | AMSH-like ubiquitin thioesterase | HC |
           chr6:31340337-31333153 | 20130731
          Length = 513

 Score =  130 bits (327), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 56/58 (96%), Positives = 58/58 (100%)

Query: 4   RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIY+TCTDVYMNPDLKF+VIDLR
Sbjct: 456 RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYNTCTDVYMNPDLKFEVIDLR 513


>Medtr8g104310.1 | AMSH-like ubiquitin thioesterase | HC |
           chr8:43936023-43927548 | 20130731
          Length = 511

 Score = 93.6 bits (231), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/58 (89%), Positives = 55/58 (94%)

Query: 4   RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           R HGIFRLTTPGGMSVI+QC QRGFHPH+ PPDGGPIYDTCTDVY+NPDLKFDVIDLR
Sbjct: 454 RTHGIFRLTTPGGMSVIRQCQQRGFHPHDPPPDGGPIYDTCTDVYLNPDLKFDVIDLR 511


>Medtr8g104310.2 | AMSH-like ubiquitin thioesterase | HC |
           chr8:43935969-43927719 | 20130731
          Length = 373

 Score = 92.4 bits (228), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 52/58 (89%), Positives = 55/58 (94%)

Query: 4   RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           R HGIFRLTTPGGMSVI+QC QRGFHPH+ PPDGGPIYDTCTDVY+NPDLKFDVIDLR
Sbjct: 316 RTHGIFRLTTPGGMSVIRQCQQRGFHPHDPPPDGGPIYDTCTDVYLNPDLKFDVIDLR 373


>Medtr4g121470.1 | AMSH-like ubiquitin thioesterase-like protein |
           HC | chr4:50216958-50208834 | 20130731
          Length = 509

 Score = 89.7 bits (221), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 36/56 (64%), Positives = 46/56 (82%)

Query: 6   HGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           HGIF L+ PGG+SVI+ C +RGFHPH +P DG PIY+ C+ VYMN ++KFDV+DLR
Sbjct: 452 HGIFHLSDPGGVSVIRNCQERGFHPHEEPSDGSPIYEHCSHVYMNANMKFDVLDLR 507


>Medtr5g034240.1 | AMSH-like ubiquitin thioesterase | HC |
           chr5:14819002-14814603 | 20130731
          Length = 235

 Score = 80.5 bits (197), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 46/58 (79%)

Query: 4   RNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYDTCTDVYMNPDLKFDVIDLR 61
           R+ G+FRLT P GM++++ C +RGFHPH +P +G P+Y+ C++VY N +L+F++ DLR
Sbjct: 178 RSCGLFRLTEPDGMNILRNCPERGFHPHKEPDNGNPVYEHCSNVYRNSNLRFEIFDLR 235