Miyakogusa Predicted Gene
- Lj1g3v5060590.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v5060590.1 Non Characterized Hit- tr|B4F8L8|B4F8L8_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,32.47,6e-19,no
description,Nucleotide-binding, alpha-beta plait; RRM_1,RNA
recognition motif domain; SUBFAMILY N,CUFF.33956.1
(272 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 193 2e-49
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 106 3e-23
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 106 3e-23
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 104 9e-23
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 102 3e-22
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 98 7e-21
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 94 2e-19
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 91 9e-19
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 91 9e-19
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 85 9e-17
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 85 9e-17
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 80 2e-15
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 80 2e-15
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 6e-13
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 70 2e-12
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 68 1e-11
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 66 5e-11
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 65 5e-11
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 7e-11
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 8e-11
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 65 9e-11
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 64 1e-10
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 1e-10
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 1e-10
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 63 2e-10
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 63 2e-10
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 62 4e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 61 9e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 61 9e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 61 9e-10
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 61 9e-10
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 1e-09
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 1e-09
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 60 3e-09
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 59 5e-09
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 5e-09
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 6e-09
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 57 2e-08
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 57 2e-08
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 57 2e-08
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 56 3e-08
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 56 3e-08
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 4e-08
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 5e-08
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 5e-08
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 5e-08
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 55 6e-08
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 55 7e-08
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 7e-08
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 55 7e-08
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 55 7e-08
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 55 8e-08
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 54 1e-07
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 54 1e-07
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 54 1e-07
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 54 2e-07
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 53 2e-07
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 3e-07
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 52 7e-07
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 52 8e-07
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 51 9e-07
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 51 9e-07
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 50 2e-06
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-06
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 4e-06
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 6e-06
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 7e-06
>Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49069532-49073325 | 20130731
Length = 345
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/186 (57%), Positives = 128/186 (68%), Gaps = 39/186 (20%)
Query: 86 GRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKN 145
G PT+VYVCNLPRSCDT LL +F PHGT++S EVCR+A++GESKG AYVTM S +AKN
Sbjct: 40 GNPTQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKN 99
Query: 146 AVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSP--RRTIYYEAPHKLYVGNLAMSA 203
A++ALDG DVGGREM V+FSV ET+NS P RRTIYYE PHK+YVGNL
Sbjct: 100 ALAALDGSDVGGREMLVKFSV---------ETLNSPPMRRRTIYYEGPHKVYVGNL---- 146
Query: 204 TPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIV 263
+G + R YAF+SYLS+RERDA+MSLNGTEFCGR +V
Sbjct: 147 -----------WGK-------------KSRVYAFVSYLSQRERDASMSLNGTEFCGRTLV 182
Query: 264 VRQGVD 269
VR+ +D
Sbjct: 183 VREVID 188
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 5/180 (2%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
++V NLP S + QL +F G ++S E+ + S+G A+VTM ++ A+ A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
DG VGGR ++V F EV G+ ++ M S+ R Y ++PHK+Y GNL T + +R
Sbjct: 170 DGTTVGGRAIKVNFP-EVPIVGKRVQ-MGSTYRG--YVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVVRQGVD 269
FA+ + S +++ + G+ R Y F+S+ + + + A+S +NG E GR + ++ VD
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVD 285
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 5/180 (2%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
++V NLP S + QL +F G ++S E+ + S+G A+VTM ++ A+ A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
DG VGGR ++V F EV G+ ++ M S+ R Y ++PHK+Y GNL T + +R
Sbjct: 170 DGTTVGGRAIKVNFP-EVPIVGKRVQ-MGSTYRG--YVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVVRQGVD 269
FA+ + S +++ + G+ R Y F+S+ + + + A+S +NG E GR + ++ VD
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVD 285
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 14/188 (7%)
Query: 78 GEQVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTM 137
GE V + + R T++Y NLP S D+ L + +G+ EV +G+S+G A+VTM
Sbjct: 103 GETVAEVDTR-TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTM 161
Query: 138 SSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVG 197
S + + LDG + GR +RV FS + P+ P+ +Y E +KL+VG
Sbjct: 162 SCVEDCNAVIQNLDGKEFMGRTLRVNFSDK--PK----------PKEPLYPETEYKLFVG 209
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTE 256
NLA + T E + F G V R+L D + G+ R Y F+SY ++ E D A++ ++ E
Sbjct: 210 NLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVE 269
Query: 257 FCGRKIVV 264
GR + V
Sbjct: 270 LEGRTLRV 277
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Query: 81 VNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSI 140
+D+ GR +YV NLP S + QL +F GT++S E+ + S+G A+VTM S
Sbjct: 104 TSDDAGR---LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSA 160
Query: 141 VSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTI--YYEAPHKLYVGN 198
AK A+ DG VGGR +V F EV P+G M R + + ++PHK+Y GN
Sbjct: 161 EEAKEAIRMFDGSQVGGRSAKVNFP-EV-PKGGERLVMGQKVRNSYRGFVDSPHKIYAGN 218
Query: 199 LAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEF 257
L +D+R F + +++ + GR R + F+++ + +AA+ ++NG E
Sbjct: 219 LGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEV 278
Query: 258 CGRKI 262
GR +
Sbjct: 279 QGRPL 283
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 7/182 (3%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V N P D+E+L +F GT+ AEV + Q+ S+G +VTMS++ A++AV
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
+G D GR + V + +P+G E +PR +E ++YV NLA +
Sbjct: 170 FNGYDYNGRSLVVN---KASPKGSRPERTERAPRT---FEPVLRIYVANLAWEVDNSRLE 223
Query: 210 YLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RDAAMSLNGTEFCGRKIVVRQGV 268
+F+ G + S R++ D + GR R + F++ E E DA +L+G GR I V
Sbjct: 224 QVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAE 283
Query: 269 DR 270
DR
Sbjct: 284 DR 285
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV NL D +L +F HG I+SA V ++G S+G +VTMS +A++AL
Sbjct: 208 IYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAAL 267
Query: 151 DGLDVGGREMRVRFSVEVNPR 171
DG + GR +RV + E PR
Sbjct: 268 DGQSLEGRTIRVSVA-EDRPR 287
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 96/179 (53%), Gaps = 5/179 (2%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++YV N+PR+ ++L + + HG + AEV S S+ A+VTM ++ A A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
L+G ++GGRE++V + + E + + + ++P+K+YVGNLA + T + ++
Sbjct: 121 LNGTEIGGREIKVN----ITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLK 176
Query: 210 YLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVVRQG 267
F+ GN S ++ + + + F+++ S+ + +AA+ S N G+KI V +
Sbjct: 177 KFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNKA 235
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 12/190 (6%)
Query: 83 DEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVS 142
+E +++V NLP D+E+L +F GT+ AEV + + S+G +VTMS+
Sbjct: 116 EEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEE 175
Query: 143 AKNAVSALDGLDVGGREMRV-RFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAM 201
+ AV+ G ++ GR + V + + PR R T NS R YVGNL
Sbjct: 176 VERAVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLR----------AYVGNLPW 225
Query: 202 SATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RDAAMSLNGTEFCGR 260
+ LF+ G V S +++ D + GR R + F++ +E E DA +L+G F GR
Sbjct: 226 DVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGR 285
Query: 261 KIVVRQGVDR 270
I V +R
Sbjct: 286 AIRVNVAEER 295
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 7/166 (4%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V N P D+E+L +F GT+ AEV + Q+ S+G +VTMS++ A++AV
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
+G D GR + V + +P+G E +PR +E ++YV NLA +
Sbjct: 170 FNGYDYNGRSLVVN---KASPKGSRPERTERAPRT---FEPVLRIYVANLAWEVDNSRLE 223
Query: 210 YLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RDAAMSLNG 254
+F+ G + S R++ D + GR R + F++ E E DA +L+G
Sbjct: 224 QVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 10/184 (5%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
++V NLP S D+ QL +F G + EV +G S+G +VTMSS + A L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 151 DGLDVGGREMRVRFSVEVNPR------GRNLETMNSSPR---RTIYYEAPHKLYVGNLAM 201
+G V GRE+RV PR G N PR R + ++++VGNLA
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 202 SATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGR 260
+ LF G V +++ D + GR R + F+++ S E D+A+ +L+G + GR
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGR 265
Query: 261 KIVV 264
I V
Sbjct: 266 AIRV 269
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 10/184 (5%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
++V NLP S D+ QL +F G + EV +G S+G +VTMSS + A L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 151 DGLDVGGREMRVRFSVEVNPR------GRNLETMNSSPR---RTIYYEAPHKLYVGNLAM 201
+G V GRE+RV PR G N PR R + ++++VGNLA
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 202 SATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGR 260
+ LF G V +++ D + GR R + F+++ S E D+A+ +L+G + GR
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGR 265
Query: 261 KIVV 264
I V
Sbjct: 266 AIRV 269
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 14/174 (8%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V++ NL S D + L F G ++S +V +G+SKG +V + +AK+A+ L
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
DG+ + +++ V F V R R N SP+ T +YV N++ ++T ED++
Sbjct: 179 DGMLINDKQVYVGFFVRHQERART----NGSPKFT-------NVYVKNISEASTDEDLKQ 227
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIV 263
LF FG + S +++D G+ R + F+++ S AA+ LNGT K++
Sbjct: 228 LFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVL 280
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 32/189 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV N+ + E L +F P G I SA V + A +G+S+ +V S SA AV
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVE 267
Query: 149 ALDGLDVG-------GR---------EMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPH 192
L+G + GR E++ +F E R L+ N
Sbjct: 268 KLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGAN------------- 314
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSL 252
LY+ NL E ++ LF+ FG V S R++ D G + F+++ + E + A++
Sbjct: 315 -LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKALNE 372
Query: 253 NGTEFCGRK 261
+ GRK
Sbjct: 373 MNGKLVGRK 381
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV +L S + QL +F ++S VCR S G AYV ++ A NA L
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+ + + +R+ FS + +P R + N +++ NL S + +
Sbjct: 92 NFTPLNEKPIRIMFS-QRDPSVRKSGSGN--------------VFIKNLDTSIDHKALHD 136
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVV 264
FA FG V S ++ D G+ + Y F+ + +E +A+ L+G +++ V
Sbjct: 137 TFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYV 190
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 91/174 (52%), Gaps = 14/174 (8%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V++ NL S D + L F G ++S +V +G+SKG +V + +AK+A+ L
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
DG+ + +++ V F V R R N SP+ T +YV N++ ++T ED++
Sbjct: 179 DGMLINDKQVYVGFFVRHQERART----NGSPKFT-------NVYVKNISEASTDEDLKQ 227
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIV 263
LF FG + S +++D G+ R + F+++ S AA+ LNGT K++
Sbjct: 228 LFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVL 280
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 32/189 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV N+ + E L +F P G I SA V + A +G+S+ +V S SA AV
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVE 267
Query: 149 ALDGLDVG-------GR---------EMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPH 192
L+G + GR E++ +F E R L+ N
Sbjct: 268 KLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGAN------------- 314
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSL 252
LY+ NL E ++ LF+ FG V S R++ D G + F+++ + E + A++
Sbjct: 315 -LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKALNE 372
Query: 253 NGTEFCGRK 261
+ GRK
Sbjct: 373 MNGKLVGRK 381
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV +L S + QL +F ++S VCR S G AYV ++ A NA L
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+ + + +R+ FS + +P R + N +++ NL S + +
Sbjct: 92 NFTPLNEKPIRIMFS-QRDPSVRKSGSGN--------------VFIKNLDTSIDHKALHD 136
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVV 264
FA FG V S ++ D G+ + Y F+ + +E +A+ L+G +++ V
Sbjct: 137 TFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYV 190
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 10/175 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V NLP S + +F GT+I E+ + ++ G+ KG +VTM S A+ AV +
Sbjct: 100 VFNLPWSLSKPDIKDLFGQCGTVIDVEIIK-SKDGKGKGYTFVTMDSGEGAQAAVDKFNA 158
Query: 153 LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLF 212
++ GR +RV F+ + + P EA + +Y NLA A +R +F
Sbjct: 159 TEISGRILRVEFA-------KGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRDIF 211
Query: 213 AR-FGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVVR 265
F S R++ + G+ Y F+SY +E E +AA+S L G E GR ++V+
Sbjct: 212 TENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVK 266
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 57/205 (27%), Positives = 101/205 (49%), Gaps = 20/205 (9%)
Query: 79 EQVNDEEGRPTEV-----YVCNLPRSCDTEQLLPMFRPH---GTIISAEVCRHAQSGE-- 128
E+++D + P + +V NL E L F H G I+S +V +H ++G+
Sbjct: 626 ERISDADIDPDRIEARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNV 685
Query: 129 SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYY 188
S G +V S +A + + L G + G + ++ N + + + T
Sbjct: 686 SMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSST--- 742
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
KL V N+A AT +D+R LF+ FG + S+RL +K G R +AF+ Y++++E ++
Sbjct: 743 ----KLLVKNVAFEATEKDLRQLFSPFGQIKSLRL--PMKFGNHRGFAFVEYVTQQEAQN 796
Query: 248 AAMSLNGTEFCGRKIVVRQGVDRES 272
A +L+ T GR +V+ + + ES
Sbjct: 797 ALTALSSTHLYGRHLVIERAKEGES 821
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 18/174 (10%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ NL S D + L F G ++S +V + +G SKG +V + SAKNA+ L
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNAIEKL 173
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
DG+ + +++ V + V R SSP+ T +YV NL+ S T ED++
Sbjct: 174 DGMLMNDKKVYVGYFVRCQER--------SSPKFT-------NVYVKNLSESYTYEDLKQ 218
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIV 263
LF FG + SV L+ G + + F+++ S A+ LNG+ K++
Sbjct: 219 LFNSFGVITSV-LIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVL 271
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+ +YV +L + + QL +F +IS VCR + S G YV S+ A NA+
Sbjct: 25 SSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAME 84
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + + G+ +R+ FS +P R N L++ NL S + +
Sbjct: 85 NLNYVPLNGKPIRIMFS-HRDPLIRKTGFAN--------------LFIKNLETSIDNKAL 129
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RDAAMSLNGTEFCGRKIVV 264
F+ FGNV S ++ D G + + F+ + +++ ++A L+G +K+ V
Sbjct: 130 HETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYV 185
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 4/177 (2%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T VYV NL S E L +F G I S + ++ +G SK +V S SA AV
Sbjct: 200 TNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKY-DNGNSKCFGFVNFQSSDSAATAVE 258
Query: 149 ALDGLDVG-GREMRVRFSVEVNPRGRNLETMNSSPRRTIYYE-APHKLYVGNLAMSATPE 206
L+G G+ + V + + + R L+ + Y + LY+ N+ S E
Sbjct: 259 KLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEE 318
Query: 207 DVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIV 263
++ LF+ FG + S +++ D + GR + F+++ + E A+ + G+K V
Sbjct: 319 KLKELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPV 374
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+V NL S D + L F GT++S +V + +G+S G +V + SAK A+ L
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQYDNHESAKCAIEKL 75
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
DG+ + ++ V + + R + N SP+ T +YV NL + T ED++
Sbjct: 76 DGMLIKDKKAFVGYFIR-----RQERSENGSPKFT-------NVYVKNLLETDTDEDLKK 123
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGT 255
LF+ +G + S +++D + G + + F+++ S AA+ LNGT
Sbjct: 124 LFSTYGVITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVEKLNGT 168
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 38/215 (17%)
Query: 80 QVNDEEGRP--TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTM 137
Q E G P T VYV NL + E L +F +G I SA + + ++G SK +V
Sbjct: 94 QERSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKD-ENGNSKCFGFVNF 152
Query: 138 SSIVSAKNAVSALDGLDVG-------GR---------EMRVRFSVEVNPRGRNLETMNSS 181
S SA AV L+G GR E+R +F E R L+ N
Sbjct: 153 QSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGAN-- 210
Query: 182 PRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYL 241
LY+ NL S E ++ +F+ FG + S +++ D G + + F+++
Sbjct: 211 ------------LYLKNLDESINDEKLKEMFSEFGTITSCKVMFD-AHGHSKGFGFVAFS 257
Query: 242 SERERDAAMSLNGTEFCGRK----IVVRQGVDRES 272
+ E A++ + G+K +V ++ DR++
Sbjct: 258 TSEEASKAINGMSGKIIGQKPLYVVVAQRKEDRKT 292
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + D E+L F +G +I A + R +G ++G +V S A+ +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
+D + GR + + +V + + +N+ S + + K++VG L + T D +
Sbjct: 65 IDKHIIDGRTVEAKKAVPRDDQ-QNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFK 123
Query: 210 YLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQGVD 269
F +FG + V ++ D R R + FI+Y SE D + E G+ + V++ V
Sbjct: 124 MYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVP 183
Query: 270 RE 271
+E
Sbjct: 184 KE 185
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + D E+L F +G +I A + R +G ++G +V S A+ +
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-- 64
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVR 209
+D + GR + + +V + + +N+ S + + K++VG L + T D +
Sbjct: 65 IDKHIIDGRTVEAKKAVPRDDQ-QNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFK 123
Query: 210 YLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQGVD 269
F +FG + V ++ D R R + FI+Y SE D + E G+ + V++ V
Sbjct: 124 MYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVP 183
Query: 270 RE 271
+E
Sbjct: 184 KE 185
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V + R + L F +G ++ + + + +G +VT S I SA NA+
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQ- 69
Query: 150 LDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEA---------PHKLYVGNLA 200
D + GR++ VR ++ PR L+ R Y K++VG L
Sbjct: 70 -DTHAILGRKVEVRKAI---PRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLP 125
Query: 201 MSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGR 260
+ + E+ + F RFG + V ++QD R R + FI++ SE + M + + GR
Sbjct: 126 ANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGR 185
Query: 261 KIVVRQGVDRE 271
++ V++ V RE
Sbjct: 186 QVEVKRAVPRE 196
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 86/180 (47%), Gaps = 16/180 (8%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
P ++++ L R Q + F +G I + + + ++G+ +G ++T + +
Sbjct: 44 PGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVI 103
Query: 148 SALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
D + +++ ++ ++ PRG + S RT K++VG + + T ++
Sbjct: 104 E--DSHIINSKQVEIKRTI---PRG----AVGSKDFRT------KKIFVGGIPSNVTEDE 148
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSL-NGTEFCGRKIVVRQ 266
R F R+G V ++++D R R + F+++ +E D +S+ N EF G ++ +++
Sbjct: 149 FRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKK 208
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 12/187 (6%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
VYV NL S + L F +GTI SA V R G+SK +V + +A AV AL
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDV-DGKSKCFGFVNFENADAAAEAVEAL 263
Query: 151 DGLDVGGREMRV-----RFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATP 205
+G +E V ++ E+ + R+ ++M + + +Y A LY+ NL S T
Sbjct: 264 NGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDK--FYGA--NLYLKNLDDSVTD 319
Query: 206 EDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVV 264
E + LF+ FG V S ++L+D QG R F+++ + E A++ +NG G+ + V
Sbjct: 320 EKLSELFSEFGTVTSCKILRD-PQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYV 378
Query: 265 RQGVDRE 271
+E
Sbjct: 379 APAQKKE 385
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ NL R+ D + L F G I+S ++ A SG SKG +V + SA++A+ L
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKL 172
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G+ + + + V R L + +YV NL+ S T +D++
Sbjct: 173 NGMLLNDKPVYVGHFQRKQDRDNALSNAKF-----------NNVYVKNLSESVTDDDLKN 221
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISY-LSERERDAAMSLNGTEFCGRKIVVRQGVD 269
F +G + S +++D+ G+ + + F+++ ++ +A +LNG +F ++ V + +
Sbjct: 222 TFGEYGTITSAVVMRDV-DGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALK 280
Query: 270 R 270
+
Sbjct: 281 K 281
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 17/177 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T +YV +L QL +F G ++S +CR S +S G YV S+ A A+
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + + +R+ +S +P R N +++ NL + + +
Sbjct: 84 VLNFTPLNNKPIRIMYS-HRDPSVRKSGAAN--------------IFIKNLDRAIDHKAL 128
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVV 264
F+ FGN+ S ++ D G + Y F+ + +E +A+ LNG + + V
Sbjct: 129 YDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 184
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 92/186 (49%), Gaps = 29/186 (15%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
+++V ++PR+ E + P+F HG ++ + + ++G+ +GC ++ ++ A A+ A
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 150 LDG---LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPE 206
L L G ++VR++ R +E +KL+VG+L A+ +
Sbjct: 149 LHNRHTLPGGVGPIQVRYADGERERLGAVE---------------YKLFVGSLNKQASVK 193
Query: 207 DVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM----SLNGT---EFCG 259
+V +F+++G + V L++D Q + R F+ Y RD A+ +LNG C
Sbjct: 194 EVEEVFSKYGRIEDVYLMRD-DQKQSRGCGFVKY---SHRDMALAAINALNGIYTMRGCE 249
Query: 260 RKIVVR 265
+ ++VR
Sbjct: 250 QPLIVR 255
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 12/187 (6%)
Query: 80 QVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS 139
Q EE T + N+P S TE + +F +G ++ E+ + + ++G A+V M S
Sbjct: 80 QEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK-NRNRGLAFVEMGS 138
Query: 140 IVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNL 199
A A+++L + GR + ++++ + + R+ I Y L+V N
Sbjct: 139 PEEASEALNSLQSYEFDGRIINIQYAK-----PKKEKIPPPVERKPITY----NLFVANF 189
Query: 200 AMSATPEDVRYLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEF 257
A +DV+ F + G V S ++ R Y F+SY S++E D A++ G F
Sbjct: 190 PYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNF 249
Query: 258 CGRKIVV 264
GR + V
Sbjct: 250 MGRPLRV 256
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 12/187 (6%)
Query: 80 QVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS 139
Q EE T + N+P S TE + +F +G ++ E+ + + ++G A+V M S
Sbjct: 80 QEQTEELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK-NRNRGLAFVEMGS 138
Query: 140 IVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNL 199
A A+++L + GR + ++++ + + R+ I Y L+V N
Sbjct: 139 PEEASEALNSLQSYEFDGRIINIQYAK-----PKKEKIPPPVERKPITY----NLFVANF 189
Query: 200 AMSATPEDVRYLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEF 257
A +DV+ F + G V S ++ R Y F+SY S++E D A++ G F
Sbjct: 190 PYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNF 249
Query: 258 CGRKIVV 264
GR + V
Sbjct: 250 MGRPLRV 256
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 85/176 (48%), Gaps = 12/176 (6%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T+VYV +P + + F GTI +G+ +G A ++ + +AK A+
Sbjct: 220 TKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRAL- 278
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
ALDG D+GG ++++ + + +P Y +++YVG+L+ T E++
Sbjct: 279 ALDGADMGGLFLKIQPC-------KATQATRFTPEMKEGY---NRIYVGSLSWEITEEEL 328
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVV 264
R F+ NV ++RL D + G R YA + + + A++L+ + GR + +
Sbjct: 329 RKFFSNC-NVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALDQSVLFGRPVRI 383
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 18/177 (10%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ NL ++ D + L F G I+S ++ SG+SKG +V + SA+NA+ L
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G+ + +++ V + R L +T + + +YV NL+ S T +D++
Sbjct: 181 NGMLINDKQVFVGHFLRKQDRDNVLS-------KTKF----NNVYVKNLSESFTEDDLKN 229
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM---SLNGTEFCGRKIVV 264
F +G + S L++D GR + + F+++ E DAA +LNG + ++ V
Sbjct: 230 EFGAYGTITSAVLMRD-ADGRSKCFGFVNF--ENAEDAAKAVEALNGKKVDDKEWYV 283
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
VYV NL S + L F +GTI SA + R A G SK +V + A AV AL
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDA-DGRSKCFGFVNFENAEDAAKAVEAL 271
Query: 151 DGLDVGGREMRV-----RFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATP 205
+G V +E V + E +GR +T+ S + LY+ NL S T
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKES---VVDKFQGLNLYLKNLDDSITD 328
Query: 206 EDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVV 264
E ++ +F+ FG + S ++++D G R F+++ + E A+ +NG + + V
Sbjct: 329 EKLKEMFSEFGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYV 387
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T +YV +L + + QL +F G ++S VCR + S G YV ++ A A+
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + + +RV +S +P R T N +++ NL + + +
Sbjct: 92 VLNFTPMNNKSIRVMYS-HRDPSSRKSGTAN--------------IFIKNLDKTIDHKAL 136
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RDAAMSLNGTEFCGRKIVV 264
F+ FG + S ++ D G+ + Y F+ + +E ++A LNG +++ V
Sbjct: 137 HDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFV 192
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 90/174 (51%), Gaps = 15/174 (8%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+V NL S D L MF+ G I+S++V ++ G+SKG +V + SA A+ L
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVM-SEDGKSKGYGFVQFETEESANAAIERL 158
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G VG +++ V V+ + R ++S P T Y LY+ NL + + +R
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDR------ISSGP-DTRYTN----LYMKNLDLDISETLLRE 207
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIV 263
F+ FG + S+ + +D G + + F+++ + + AM ++NG + G KI+
Sbjct: 208 KFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAMETMNGLQL-GSKIL 259
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
P +YV +L QL F T+ S +CR + SG+S YV S A A+
Sbjct: 9 PASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAI 68
Query: 148 SALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPED 207
+ + G+ +RV +S +P R N ++V NLA S
Sbjct: 69 EVKNHSTLNGKAIRVMWS-RRDPDARKSCIGN--------------VFVKNLAESIDNSG 113
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFCGRKIVVRQ 266
+ +F +FGN+ S +++ + G+ + Y F+ + +E +AA+ LNG ++I V +
Sbjct: 114 LEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGK 172
Query: 267 GVDR 270
V +
Sbjct: 173 FVKK 176
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 6/181 (3%)
Query: 87 RPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNA 146
R T +Y+ NL L F G IIS V + + +G SKG +V + AK A
Sbjct: 187 RYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDS-NGMSKGFGFVNFDNPEDAKRA 245
Query: 147 VSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRR--TIYYEAPHKLYVGNLAMSAT 204
+ ++GL +G + + V + + R + L R+ + Y+ + +YV N+ + +
Sbjct: 246 METMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSN-IYVKNIDDNVS 304
Query: 205 PEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIV 263
E +R F+ G + S ++++D K G + + F+ + + E + A+ S +G F G+ +
Sbjct: 305 DEGLRDHFSVCGTITSAKIMRDDK-GISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLY 363
Query: 264 V 264
V
Sbjct: 364 V 364
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 2/180 (1%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+ +P + F G + + S SKG Y+ +S A+ AL
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-AL 275
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
G + G+ + V+ S ++ T ++ Y KLYVGNL + T +R
Sbjct: 276 SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLRE 335
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGT-EFCGRKIVVRQGVD 269
+F FG V V+L DL+ G + + FI + AA SLNG E GR I V D
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVSSVAD 395
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 2/180 (1%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+ +P + F G + + S SKG Y+ +S A+ AL
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-AL 275
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
G + G+ + V+ S ++ T ++ Y KLYVGNL + T +R
Sbjct: 276 SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLRE 335
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGT-EFCGRKIVVRQGVD 269
+F FG V V+L DL+ G + + FI + AA SLNG E GR I V D
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVSSVAD 395
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 2/180 (1%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+ +P + F G + + S SKG Y+ +S A+ AL
Sbjct: 217 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-AL 275
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
G + G+ + V+ S ++ T ++ Y KLYVGNL + T +R
Sbjct: 276 SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLRE 335
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGT-EFCGRKIVVRQGVD 269
+F FG V V+L DL+ G + + FI + AA SLNG E GR I V D
Sbjct: 336 IFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVSSVAD 395
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 9/183 (4%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+ +P + F G + + S SKG Y+ +S A+ AL
Sbjct: 204 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-AL 262
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTI---YYEAPHKLYVGNLAMSATPED 207
G + G+ + V+ S +NL N+S + Y KLYVGNL + T +
Sbjct: 263 SGQLLLGQPVMVKPS----EAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEAN 318
Query: 208 VRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGT-EFCGRKIVVRQ 266
+R +F FG + V+L D++ G + + F+ + AA SLNG E GR I V
Sbjct: 319 LREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSS 378
Query: 267 GVD 269
D
Sbjct: 379 VTD 381
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EV++ LPR + + + P G I+ ++ + ++GESKG A+V + A+ A+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
+ + G+ +R S E H+L++GN+ + T ++
Sbjct: 164 DIHNKEFKGKTLRCLLS-----------------------ETKHRLFIGNIPKTWTEDEF 200
Query: 209 RYLFARFG-NVASVRLLQDLK-QGRRRAYAFISY 240
R G V S+ L++D + Q R R +AF+ Y
Sbjct: 201 RKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EV++ LPR + + + P G I+ ++ + ++GESKG A+V + A+ A+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
+ + G+ +R S E H+L++GN+ + T ++
Sbjct: 164 DIHNKEFKGKTLRCLLS-----------------------ETKHRLFIGNIPKTWTEDEF 200
Query: 209 RYLFARFG-NVASVRLLQDLK-QGRRRAYAFISY 240
R G V S+ L++D + Q R R +AF+ Y
Sbjct: 201 RKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EV++ LPR + + + P G I+ ++ + ++GESKG A+V + A+ A+
Sbjct: 104 SEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID 163
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
+ + G+ +R S E H+L++GN+ + T ++
Sbjct: 164 DIHNKEFKGKTLRCLLS-----------------------ETKHRLFIGNIPKTWTEDEF 200
Query: 209 RYLFARFG-NVASVRLLQDLK-QGRRRAYAFISY 240
R G V S+ L++D + Q R R +AF+ Y
Sbjct: 201 RKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLY 234
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
P ++++ + + ++L F+ G ++ A + + +G ++G +V + A+ V
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 148 SALDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP---HKLYVGNLAMSA 203
+D GR + + +V PR +N+ T ++S P K++VG LA +
Sbjct: 63 MEKHVID--GRTVEAKKAV---PRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTV 117
Query: 204 TPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIV 263
T D + F +FG + V ++ D R R + FI+Y SE + + E G+ +
Sbjct: 118 TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE 177
Query: 264 VRQGVDRE 271
V++ V ++
Sbjct: 178 VKRAVPKD 185
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
P ++++ + + ++L F+ G ++ A + + +G ++G +V + A+ V
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 148 SALDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP---HKLYVGNLAMSA 203
+D GR + + +V PR +N+ T ++S P K++VG LA +
Sbjct: 63 MEKHVID--GRTVEAKKAV---PRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTV 117
Query: 204 TPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIV 263
T D + F +FG + V ++ D R R + FI+Y SE + + E G+ +
Sbjct: 118 TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE 177
Query: 264 VRQGVDRE 271
V++ V ++
Sbjct: 178 VKRAVPKD 185
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 88 PTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAV 147
P ++++ + + ++L F+ G ++ A + + +G ++G +V + A+ V
Sbjct: 3 PGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
Query: 148 SALDGLDVGGREMRVRFSVEVNPRG-RNLETMNSSPRRTIYYEAP---HKLYVGNLAMSA 203
+D GR + + +V PR +N+ T ++S P K++VG LA +
Sbjct: 63 MEKHVID--GRTVEAKKAV---PRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTV 117
Query: 204 TPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIV 263
T D + F +FG + V ++ D R R + FI+Y SE + + E G+ +
Sbjct: 118 TESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMVE 177
Query: 264 VRQGVDRE 271
V++ V ++
Sbjct: 178 VKRAVPKD 185
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 6/177 (3%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
V+V NL S ++L F GTI SA V R G+SK +V S A AV AL
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVEAL 273
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETM--NSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
+G + +E V + + + R L+ S Y+ + LYV NL S E +
Sbjct: 274 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGAN-LYVKNLDDSIADEKL 332
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERD-AAMSLNGTEFCGRKIVV 264
+ LF+ +G + S ++++D G R F+++ + E A + +NG + + V
Sbjct: 333 KELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYV 388
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ NL ++ D + L F G I+S +V SG+SKG +V + +A+ A+ L
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+G+ + ++ V V P R E ++ R + ++V NL+ S T ++++
Sbjct: 183 NGMLLNDKQ------VYVGPFLRKQERESTGDRAKF-----NNVFVKNLSESTTDDELKK 231
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKI 262
F FG + S +++D G+ + + F+++ E DAA ++ G+KI
Sbjct: 232 TFGEFGTITSAVVMRD-GDGKSKCFGFVNF--ESTDDAARAVEA--LNGKKI 278
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T +YV +L + QL +F G ++S VCR + S G YV S+ A A+
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + R +R+ +S + P +I +++ NL + + +
Sbjct: 94 VLNFTPLNNRPIRIMYS-------------HRDP--SIRKSGQGNIFIKNLDKAIDHKAL 138
Query: 209 RYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVV 264
F+ FGN+ S ++ D G+ + Y F+ + +E A+ LNG +++ V
Sbjct: 139 HDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 194
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 22/196 (11%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPH-------GTIISAEVCRHAQSGESKGCAYVTMSSIVSA 143
VYV LP + + EQ + +F T + + K A+V M S+ A
Sbjct: 242 VYVGGLPPTAN-EQSVAIFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEA 300
Query: 144 KNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLETMNSSPRRTIYYEAP 191
NA+ ALDG+ G ++VR + NP NL + +P E P
Sbjct: 301 SNAM-ALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGP 359
Query: 192 HKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAA-M 250
+++VG L T +R L FG + L++D + G + YAF Y D A
Sbjct: 360 DRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIACA 419
Query: 251 SLNGTEFCGRKIVVRQ 266
+LNG + + + VR+
Sbjct: 420 ALNGIKMGDKTLTVRR 435
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 13/187 (6%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + + E+L F +G + A + + +G ++G +V A V
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 150 LDGLDVGGREMRVRFSV---EVNPRGRNLETMNSSPR--RTIYYEAPHKLYVGNLAMSAT 204
+D GR + + +V + N R +++ SP RT K++VG LA + T
Sbjct: 67 KHNID--GRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRT------RKIFVGGLASTVT 118
Query: 205 PEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVV 264
D + F +FG + V ++ D R R + FI+Y SE D + E G+ + V
Sbjct: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEV 178
Query: 265 RQGVDRE 271
++ V +E
Sbjct: 179 KRAVPKE 185
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L F G +IS ++ R+ +G+ +G ++ S +A+ +
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP-HKLYVGNLAMSATPEDVR 209
+G + G E R N + RR P H ++VG+LA T ++
Sbjct: 77 NGTQMPGTEQTFRL---------NWASFGIGERRPD--AGPDHSIFVGDLAPDVTDYLLQ 125
Query: 210 YLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFC 258
F +G+V +++ D GR + Y F+ + E ER+ AMS +NG +C
Sbjct: 126 ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGV-YC 175
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 13/187 (6%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++++ + + E+L F +G + A + + +G ++G +V A V
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 150 LDGLDVGGREMRVRFSV---EVNPRGRNLETMNSSPR--RTIYYEAPHKLYVGNLAMSAT 204
+D GR + + +V + N R +++ SP RT K++VG LA + T
Sbjct: 67 KHNID--GRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRT------RKIFVGGLASTVT 118
Query: 205 PEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVV 264
D + F +FG + V ++ D R R + FI+Y SE D + E G+ + V
Sbjct: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGKMVEV 178
Query: 265 RQGVDRE 271
++ V +E
Sbjct: 179 KRAVPKE 185
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%)
Query: 190 APHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAA 249
+ KL++G L+ + + +R F +G+V R++ D + GR R + F+++ SE +A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 250 MSLNGTEFCGRKIVVRQGVDRES 272
+S++G + GR I V DR++
Sbjct: 94 LSMDGQDLNGRNIRVSYANDRQA 116
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 83 DEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVS 142
D + + T +YV NL + L F G I+S + + ++G+SKG +V S
Sbjct: 188 DLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAI-KKDENGQSKGFGFVNYDSPDD 246
Query: 143 AKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHK-----LYVG 197
A+ A+ A+DG G + + V + + R + L + + E K +YV
Sbjct: 247 ARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHL--------FVEKGLKHMGSNIYVK 298
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTE 256
N+ S E++R F+ G V S ++++D K G + + F+ + + E +MS NG
Sbjct: 299 NIDTSVGDEELRDHFSACGEVLSAKVMRDDK-GTSKGFGFVCFSTVVEAFKSMSCFNGCM 357
Query: 257 FCGRKIVV 264
F G+ + V
Sbjct: 358 FHGKPLYV 365
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+YV +L QL F T+ISA VC+ + +G+S YV +SS A A+
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRY 210
+ + G+ +RV + + ++ R++ ++V NLA S +
Sbjct: 77 NHSSLNGKVIRVMWL-----------SRDADARKS----GKGNVFVKNLAASIDNVGLHD 121
Query: 211 LFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEFCGRKIVV 264
LF ++GN+ S ++ + + G+ + + +I + SE + A+ +NG+ ++I V
Sbjct: 122 LFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYV 175
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RDAAMS 251
KL V N+A AT +D+R LF+ FG + ++L +K G R +AF+ Y++++E ++A +
Sbjct: 601 KLLVRNVAFEATKKDLRQLFSPFGQIKKLKL--PMKFGNHRGFAFVEYVTQQEAQNALTA 658
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
L+ T GR +V+ + + ES
Sbjct: 659 LSSTHLYGRHLVIERAKEGES 679
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVYV +P +E L G ++ + + + E+KG A+VT ++ A A+
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + GR+++ S +A ++L++GN+ S +D+
Sbjct: 170 ELNNTEFKGRKIKCSTS-----------------------QAKNRLFIGNIPRSWGEKDL 206
Query: 209 RYLFARFG-NVASVRLLQDLKQ-GRRRAYAFISY 240
+ + G V +V L++D+K R +AFI Y
Sbjct: 207 KKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDY 240
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 191 PHK--LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERD 247
PHK +YVG + + A ED++ R G V VR+++ + +AF++Y + E
Sbjct: 107 PHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASK 166
Query: 248 AAMSLNGTEFCGRKI 262
A LN TEF GRKI
Sbjct: 167 AIEELNNTEFKGRKI 181
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RDAAMS 251
KL V N+A AT +D+R LF+ FG + ++L +K G R +AF+ Y++++E ++A +
Sbjct: 587 KLLVRNVAFEATKKDLRQLFSPFGQIKKLKL--PMKFGNHRGFAFVEYVTQQEAQNALTA 644
Query: 252 LNGTEFCGRKIVVRQGVDRES 272
L+ T GR +V+ + + ES
Sbjct: 645 LSSTHLYGRHLVIERAKEGES 665
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 129 SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLE 176
K A+V M S+ A NA+ ALDG+ G ++VR + NP NL
Sbjct: 336 DKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 394
Query: 177 TMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
+ SP + P +++VG + T +R L FG + L++D + G + YA
Sbjct: 395 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 454
Query: 237 FISYLSERERD-AAMSLNGTEFCGRKIVVRQ 266
F Y D A +LNG + + + VR+
Sbjct: 455 FCVYQDLAVTDIACAALNGIKMGDKTLTVRR 485
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 129 SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLE 176
K A+V M S+ A NA+ ALDG+ G ++VR + NP NL
Sbjct: 334 DKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 392
Query: 177 TMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
+ SP + P +++VG + T +R L FG + L++D + G + YA
Sbjct: 393 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 452
Query: 237 FISYLSERERD-AAMSLNGTEFCGRKIVVRQ 266
F Y D A +LNG + + + VR+
Sbjct: 453 FCVYQDLAVTDIACAALNGIKMGDKTLTVRR 483
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 18/195 (9%)
Query: 80 QVNDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS 139
Q + E + YV NL E L +F G +++ V + + + +G +V S
Sbjct: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 140 IVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNL 199
A A+ L+ + + G+ +RV + S ++++ A L++GNL
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVNKA--------------SQDKKSLDVGA--NLFIGNL 119
Query: 200 AMSATPEDVRYLFARFGN-VASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLNGTEF 257
+ + F+ FG V + ++++D G R + FISY S D+A+ ++NG
Sbjct: 120 DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYL 179
Query: 258 CGRKIVVRQGVDRES 272
C R+I V +++
Sbjct: 180 CNRQITVSYAYKKDT 194
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 35/208 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T ++V +P S E F +G I + + S +G ++T + S +N +S
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 149 ALDGLDVGGREMRVRFSV----EVNPRGR--------------NLETMNSSPRRTIYYEA 190
++GG + V + +V P GR + T ++ Y+
Sbjct: 152 ETH--ELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDH 209
Query: 191 P--------------HKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
P K++VG L A ED+R F RFG + V + +D K+ R +
Sbjct: 210 PGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFG 269
Query: 237 FISYLSERERDAAMSLNGTEFCGRKIVV 264
F+++ E D +SL E CG ++ +
Sbjct: 270 FVTFADEGVAD-RVSLRPHEICGHEVAI 296
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V +P DTE L +G + V + +G S+G YVT +S+ AK +S
Sbjct: 8 VLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHV 67
Query: 153 LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLF 212
L G R + V+ + P+ E M + ++ +++V + S T E R F
Sbjct: 68 L--GDRMLEVKVA---TPK----EEMRAPAKKVT------RIFVARIPPSVTEETFRSHF 112
Query: 213 ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQGVDRES 272
++G++ + + +D R FI++ + + MS E G +VV + +E
Sbjct: 113 EKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATPKED 171
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 35/208 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T ++V +P S E F +G I + + S +G ++T + S +N +S
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 149 ALDGLDVGGREMRVRFSV----EVNPRGR--------------NLETMNSSPRRTIYYEA 190
++GG + V + +V P GR + T ++ Y+
Sbjct: 152 ETH--ELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDH 209
Query: 191 P--------------HKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
P K++VG L A ED+R F RFG + V + +D K+ R +
Sbjct: 210 PGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFG 269
Query: 237 FISYLSERERDAAMSLNGTEFCGRKIVV 264
F+++ E D +SL E CG ++ +
Sbjct: 270 FVTFADEGVAD-RVSLRPHEICGHEVAI 296
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V +P DTE L +G + V + +G S+G YVT +S+ AK +S
Sbjct: 8 VLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHV 67
Query: 153 LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLF 212
L G R + V+ + P+ E M + ++ +++V + S T E R F
Sbjct: 68 L--GDRMLEVKVAT---PK----EEMRAPAKKVT------RIFVARIPPSVTEETFRSHF 112
Query: 213 ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQGVDRES 272
++G++ + + +D R FI++ + + MS E G +VV + +E
Sbjct: 113 EKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATPKED 171
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 35/208 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T ++V +P S E F +G I + + S +G ++T + S +N +S
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 149 ALDGLDVGGREMRVRFSV----EVNPRGR--------------NLETMNSSPRRTIYYEA 190
++GG + V + +V P GR + T ++ Y+
Sbjct: 152 ETH--ELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDH 209
Query: 191 P--------------HKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
P K++VG L A ED+R F RFG + V + +D K+ R +
Sbjct: 210 PGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFG 269
Query: 237 FISYLSERERDAAMSLNGTEFCGRKIVV 264
F+++ E D +SL E CG ++ +
Sbjct: 270 FVTFADEGVAD-RVSLRPHEICGHEVAI 296
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V +P DTE L +G + V + +G S+G YVT +S+ AK +S
Sbjct: 8 VLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHV 67
Query: 153 LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLF 212
L G R + V+ + P+ E M + ++ +++V + S T E R F
Sbjct: 68 L--GDRMLEVKVAT---PK----EEMRAPAKKVT------RIFVARIPPSVTEETFRSHF 112
Query: 213 ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQGVDRES 272
++G++ + + +D R FI++ + + MS E G +VV + +E
Sbjct: 113 EKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATPKED 171
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 84/208 (40%), Gaps = 35/208 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T ++V +P S E F +G I + + S +G ++T + S +N +S
Sbjct: 92 TRIFVARIPPSVTEETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMS 151
Query: 149 ALDGLDVGGREMRVRFSV----EVNPRGR--------------NLETMNSSPRRTIYYEA 190
++GG + V + +V P GR + T ++ Y+
Sbjct: 152 ETH--ELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAYNAYISTATRYAALGAPTLYDH 209
Query: 191 P--------------HKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
P K++VG L A ED+R F RFG + V + +D K+ R +
Sbjct: 210 PGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFG 269
Query: 237 FISYLSERERDAAMSLNGTEFCGRKIVV 264
F+++ E D +SL E CG ++ +
Sbjct: 270 FVTFADEGVAD-RVSLRPHEICGHEVAI 296
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V +P DTE L +G + V + +G S+G YVT +S+ AK +S
Sbjct: 8 VLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHV 67
Query: 153 LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLF 212
L G R + V+ + P+ E M + ++ +++V + S T E R F
Sbjct: 68 L--GDRMLEVKVAT---PK----EEMRAPAKKVT------RIFVARIPPSVTEETFRSHF 112
Query: 213 ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEFCGRKIVVRQGVDRES 272
++G++ + + +D R FI++ + + MS E G +VV + +E
Sbjct: 113 EKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSET-HELGGSAVVVDRATPKED 171
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVYV +P +E L G ++ + + + E+KG A+VT ++ A A+
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + GR+++ S +A ++L++GN+ S +D+
Sbjct: 170 ELNNTEFKGRKIKCSTS-----------------------QAKNRLFIGNIPRSWGEKDL 206
Query: 209 RYLFARFG-NVASVRLLQDLKQ-GRRRAYAFISY 240
+ + G V +V L++D+K R +AFI Y
Sbjct: 207 KKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDY 240
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 191 PHK--LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERD 247
PHK +YVG + + A ED++ R G V VR+++ + +AF++Y + E
Sbjct: 107 PHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASK 166
Query: 248 AAMSLNGTEFCGRKI 262
A LN TEF GRKI
Sbjct: 167 AIEELNNTEFKGRKI 181
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVYV +P +E L G ++ + + + E+KG A+VT ++ A A+
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + GR+++ S +A ++L++GN+ S +D+
Sbjct: 170 ELNNTEFKGRKIKCSTS-----------------------QAKNRLFIGNIPRSWGEKDL 206
Query: 209 RYLFARFG-NVASVRLLQDLKQ-GRRRAYAFISY 240
+ + G V +V L++D+K R +AFI Y
Sbjct: 207 KKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDY 240
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 191 PHK--LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERD 247
PHK +YVG + + A ED++ R G V VR+++ + +AF++Y + E
Sbjct: 107 PHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASK 166
Query: 248 AAMSLNGTEFCGRKI 262
A LN TEF GRKI
Sbjct: 167 AIEELNNTEFKGRKI 181
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVYV +P +E L G ++ + + + E+KG A+VT ++ A A+
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + GR+++ S +A ++L++GN+ S +D+
Sbjct: 170 ELNNTEFKGRKIKCSTS-----------------------QAKNRLFIGNIPRSWGEKDL 206
Query: 209 RYLFARFG-NVASVRLLQDLKQ-GRRRAYAFISY 240
+ + G V +V L++D+K R +AFI Y
Sbjct: 207 KKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDY 240
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 191 PHK--LYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLS-ERERD 247
PHK +YVG + + A ED++ R G V VR+++ + +AF++Y + E
Sbjct: 107 PHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASK 166
Query: 248 AAMSLNGTEFCGRKI 262
A LN TEF GRKI
Sbjct: 167 AIEELNNTEFKGRKI 181
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 129 SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLE 176
K A+V M S+ A NA+ ALDG+ G ++VR + NP NL
Sbjct: 336 DKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 394
Query: 177 TMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
+ SP + P +++VG + T +R L FG + L++D + G + YA
Sbjct: 395 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 454
Query: 237 FISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
F Y D A +LNG + + + VR+
Sbjct: 455 FCVYQDLAVTDIACAALNGIKMGDKTLTVRR 485
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 129 SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLE 176
K A+V M S+ A NA+ ALDG+ G ++VR + NP NL
Sbjct: 334 DKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 392
Query: 177 TMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
+ SP + P +++VG + T +R L FG + L++D + G + YA
Sbjct: 393 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 452
Query: 237 FISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
F Y D A +LNG + + + VR+
Sbjct: 453 FCVYQDLAVTDIACAALNGIKMGDKTLTVRR 483
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 129 SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLE 176
K A+V M S+ A NA+ ALDG+ G ++VR + NP NL
Sbjct: 336 DKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 394
Query: 177 TMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
+ SP + P +++VG + T +R L FG + L++D + G + YA
Sbjct: 395 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 454
Query: 237 FISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
F Y D A +LNG + + + VR+
Sbjct: 455 FCVYQDLAVTDIACAALNGIKMGDKTLTVRR 485
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 129 SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLE 176
K A+V M S+ A NA+ ALDG+ G ++VR + NP NL
Sbjct: 334 DKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 392
Query: 177 TMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
+ SP + P +++VG + T +R L FG + L++D + G + YA
Sbjct: 393 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 452
Query: 237 FISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
F Y D A +LNG + + + VR+
Sbjct: 453 FCVYQDLAVTDIACAALNGIKMGDKTLTVRR 483
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 129 SKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLE 176
K A+V M S+ A NA+ ALDG+ G ++VR + NP NL
Sbjct: 336 DKKFAFVEMRSVEEASNAM-ALDGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLG 394
Query: 177 TMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYA 236
+ SP + P +++VG + T +R L FG + L++D + G + YA
Sbjct: 395 LVGLSPGSAGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYA 454
Query: 237 FISYLSERERDAA-MSLNGTEFCGRKIVVRQ 266
F Y D A +LNG + + + VR+
Sbjct: 455 FCVYQDLAVTDIACAALNGIKMGDKTLTVRR 485
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L F G + SA+V R+ Q+G+S+G +V + A+ +
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 151 DGLDVGGREMRVRFSVEVNPRGRNLETMNSS----PRRTIYYEAPHKLYVGNLAMSATPE 206
+G + + R N T +++ RR+ + ++VG+LA+ T
Sbjct: 178 NGTMMPNTDQAFRL---------NWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDA 228
Query: 207 DVRYLFA-RFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS-LNGTEFC 258
++ FA +F ++ +++ D GR + Y F+ + E ER AM+ +NG +C
Sbjct: 229 MLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGV-YC 281
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T++++ + S D L F +G ++ A + ++G S+G ++T +S+ A +A+
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 149 ALDGLDVGGREMRVRFSVE 167
ALDG D+ GR +RV ++ E
Sbjct: 102 ALDGQDLHGRRVRVNYANE 120
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-S 251
KL++G ++ S +R F+R+G V R++ D + GR R + FI++ S E +A+ +
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 252 LNGTEFCGRKIVVRQGVDR 270
L+G + GR++ V +R
Sbjct: 103 LDGQDLHGRRVRVNYANER 121
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
+ ++ +VG LA + + + F++FG + +++ D + GR R + F+++ E+ RD
Sbjct: 5 DVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRD 64
Query: 248 AAMSLNGTEFCGRKIVVRQ 266
A +NG + GR I V +
Sbjct: 65 AIEEMNGQDIDGRNITVNE 83
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L F G + S +V R+ Q+ +S+G ++ ++ +A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 151 DG--LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP-HKLYVGNLAMSATPED 207
+G + GG+ R+ N T ++ R + + P H ++VG+LA T
Sbjct: 122 NGTIMPNGGQNYRL-----------NWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 208 VRYLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS 251
++ F AR+ +V +++ D GR + Y F+ + E E+ AM+
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMT 215
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L F G + S +V R+ Q+ +S+G ++ ++ +A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 151 DG--LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP-HKLYVGNLAMSATPED 207
+G + GG+ R+ N T ++ R + + P H ++VG+LA T
Sbjct: 122 NGTIMPNGGQNYRL-----------NWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 208 VRYLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS 251
++ F AR+ +V +++ D GR + Y F+ + E E+ AM+
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMT 215
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L F G + S +V R+ Q+ +S+G ++ ++ +A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 151 DG--LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP-HKLYVGNLAMSATPED 207
+G + GG+ R+ N T ++ R + + P H ++VG+LA T
Sbjct: 122 NGTIMPNGGQNYRL-----------NWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 208 VRYLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS 251
++ F AR+ +V +++ D GR + Y F+ + E E+ AM+
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMT 215
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T+++V + + D + L F +G ++ A + +SG SKG +VT +++ A +A+
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 149 ALDGLDVGGREMRVRFSVE 167
ALDG D+ GR + V F+ E
Sbjct: 104 ALDGQDLYGRRVGVNFANE 122
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T+++V + + D + L F +G ++ A + +SG SKG +VT +++ A +A+
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 149 ALDGLDVGGREMRVRFSVE 167
ALDG D+ GR + V F+ E
Sbjct: 104 ALDGQDLYGRRVGVNFANE 122
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 29/200 (14%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSA 149
++V +L L F + + A V ++G S+G +V+ + A++A++
Sbjct: 132 HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAIND 191
Query: 150 LDGLDVGGREMRVRFSVE-VNPRGRNLE--------------------TMNSSPRRTIYY 188
L G +G R++R ++ + N G N T + SP + Y
Sbjct: 192 LTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQY 251
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDA 248
+YVGNLA T D+ + F G V ++D++ R + + F+ Y + E
Sbjct: 252 TT---VYVGNLAPEVTSVDLHHHFHALG----VGTIEDVRVQRDKGFGFVRYSTHGEAAL 304
Query: 249 AMSLNGTEFC-GRKIVVRQG 267
A+ + T F G+ I G
Sbjct: 305 AIQMGNTRFLFGKPIKCSWG 324
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 15/165 (9%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSAL 150
+++ +L D L F G + S +V R+ Q+ +S+G ++ ++ +A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 151 DG--LDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAP-HKLYVGNLAMSATPED 207
+G + GG+ R+ N T ++ R + + P H ++VG+LA T
Sbjct: 122 NGTIMPNGGQNYRL-----------NWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYL 170
Query: 208 VRYLF-ARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMS 251
++ F AR+ +V +++ D GR + Y F+ + E E+ AM+
Sbjct: 171 LQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMT 215
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
+ ++ +VG LA + E + F+++G + +++ D + GR R + F+++ E+ RD
Sbjct: 5 DVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRD 64
Query: 248 AAMSLNGTEFCGRKIVVRQ 266
A +NG + GR I V +
Sbjct: 65 AIEGMNGQDMDGRNITVNE 83
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
+ ++ +VG LA + E + F+++G + +++ D + GR R + F+++ +E+ D
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 248 AAMSLNGTEFCGRKIVVRQ 266
A ++NG + GR I V Q
Sbjct: 63 AIEAMNGQDLDGRNITVNQ 81
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-S 251
KLYVG ++ S +R FAR+G+V R++ D +QGR + + F+++ + E AA+ +
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 252 LNGTEFCGRKIVVRQGVDR 270
++ E GR + V +R
Sbjct: 101 MDNQELHGRTVRVNYAQER 119
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 189 EAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERE-RD 247
+ ++ +VG LA + E + F+++G + +++ D + GR R + F+++ +E+ D
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 248 AAMSLNGTEFCGRKIVVRQ 266
A ++NG + GR I V Q
Sbjct: 63 AIEAMNGQDLDGRNITVNQ 81
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGES---------KGCAYVTMSSIV 141
VYV LP + + + F ++ A A SG+S K A+V M ++
Sbjct: 60 VYVGGLPPFANEQSIASFFS---QVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVE 116
Query: 142 SAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLETMNSSPRRTIYYE 189
A NA+ ALDG+ G +RVR + NP NL + S E
Sbjct: 117 EASNAM-ALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 175
Query: 190 APHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAA 249
+++VG L T +R L FG + S +++D + G + Y F Y D A
Sbjct: 176 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 235
Query: 250 -MSLNGTEFCGRKIVVRQ 266
+LNG + + + VR+
Sbjct: 236 CAALNGLKMGDKTLTVRR 253
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V + S D L F +G ++ A + ++G S+G ++T +S+ A +A+ ALDG
Sbjct: 54 VAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDG 113
Query: 153 LDVGGREMRVRFSVE 167
D+ GR +RV ++ E
Sbjct: 114 QDLHGRRVRVNYANE 128
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 175 LETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRA 234
+ M S+P ++ L V ++ S +R F+R+G V R++ D + GR R
Sbjct: 33 IRCMCSAPTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRG 92
Query: 235 YAFISYLSERERDAAM-SLNGTEFCGRKIVVRQGVDR 270
+ FI++ S E +A+ +L+G + GR++ V +R
Sbjct: 93 FGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANER 129
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGES---------KGCAYVTMSSIV 141
VYV LP + + + F ++ A A SG+S K A+V M ++
Sbjct: 165 VYVGGLPPFANEQSIASFFS---QVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVE 221
Query: 142 SAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLETMNSSPRRTIYYE 189
A NA+ ALDG+ G +RVR + NP NL + S E
Sbjct: 222 EASNAM-ALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 280
Query: 190 APHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERD-A 248
+++VG L T +R L FG + S +++D + G + Y F Y D A
Sbjct: 281 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 340
Query: 249 AMSLNGTEFCGRKIVVRQ 266
+LNG + + + VR+
Sbjct: 341 CAALNGLKMGDKTLTVRR 358
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS------IVSA 143
++++ + + E+L F +G +++ V R +G+ +G +V S ++
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLED 66
Query: 144 KNAVSALDGLDVGGR------EMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVG 197
K+ + DG V + + ++ S + + N RT K++VG
Sbjct: 67 KHVI---DGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRT------KKIFVG 117
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEF 257
L + E R F +G+V V ++ D GR R + FI++ +E D + +
Sbjct: 118 GLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDL 177
Query: 258 CGRKIVVRQGVDRES 272
G+++ V++ + +++
Sbjct: 178 NGKQVEVKRALPKDA 192
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 85/195 (43%), Gaps = 21/195 (10%)
Query: 90 EVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSS------IVSA 143
++++ + + E+L F +G +++ V R +G+ +G +V S ++
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLED 66
Query: 144 KNAVSALDGLDVGGR------EMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVG 197
K+ + DG V + + ++ S + + N RT K++VG
Sbjct: 67 KHVI---DGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRT------KKIFVG 117
Query: 198 NLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAMSLNGTEF 257
L + E R F +G+V V ++ D GR R + FI++ +E D + +
Sbjct: 118 GLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDL 177
Query: 258 CGRKIVVRQGVDRES 272
G+++ V++ + +++
Sbjct: 178 NGKQVEVKRALPKDA 192
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGES---------KGCAYVTMSSIV 141
VYV LP + + + F ++ A A SG+S K A+V M ++
Sbjct: 180 VYVGGLPPFANEQSIASFFS---QVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVE 236
Query: 142 SAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLETMNSSPRRTIYYE 189
A NA+ ALDG+ G +RVR + NP NL + S E
Sbjct: 237 EASNAM-ALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 295
Query: 190 APHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAA 249
+++VG L T +R L FG + S +++D + G + Y F Y D A
Sbjct: 296 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 355
Query: 250 -MSLNGTEFCGRKIVVRQ 266
+LNG + + + VR+
Sbjct: 356 CAALNGLKMGDKTLTVRR 373
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 91 VYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGES---------KGCAYVTMSSIV 141
VYV LP + + + F ++ A A SG+S K A+V M ++
Sbjct: 17 VYVGGLPPFANEQSIASFFS---QVMIAIGGNSAGSGDSVVNVYINHEKKFAFVEMRTVE 73
Query: 142 SAKNAVSALDGLDVGGREMRVRFSVEVNPR------------GRNLETMNSSPRRTIYYE 189
A NA+ ALDG+ G +RVR + NP NL + S E
Sbjct: 74 EASNAM-ALDGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGGAE 132
Query: 190 APHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERD-A 248
+++VG L T +R L FG + S +++D + G + Y F Y D A
Sbjct: 133 GLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIA 192
Query: 249 AMSLNGTEFCGRKIVVRQ 266
+LNG + + + VR+
Sbjct: 193 CAALNGLKMGDKTLTVRR 210
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 32/181 (17%)
Query: 82 NDEEGRPTEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIV 141
N+EE +++V +P+ ++LL +F+ + + + + S+GC +V S
Sbjct: 11 NNEES--VKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRD 68
Query: 142 SAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETMN--SSPRRTIYYEAP-----HKL 194
A AV+A N +T+ SSP + Y + HKL
Sbjct: 69 EADKAVNAC----------------------HNKKTLPGASSPLQVKYADGELERLEHKL 106
Query: 195 YVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-SLN 253
++G L + + +V LF+++G + +++L+ +Q + AF+ Y ++ + AA+ ++N
Sbjct: 107 FIGMLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAIN 166
Query: 254 G 254
G
Sbjct: 167 G 167
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 85 EGRP-TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSA 143
EG P +++ ++P+ ++L F+P G ++SA+V +G SK +V+ S +A
Sbjct: 344 EGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAA 403
Query: 144 KNAVSALDGLDVGGREMRVRFSVEVNP 170
++A+S ++G +GG++++V+ + P
Sbjct: 404 QSAISMMNGCQLGGKKLKVQHKRDNKP 430
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V N+ + L P+F +G ++ + R ++GES+G A+V A AV LDG
Sbjct: 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRLDG 79
Query: 153 LDVGGREMRVRFS-----VEVNPRGRNLET 177
V GRE+ V+F+ E +GR +ET
Sbjct: 80 RMVDGREITVQFAKYGPNAERIHKGRIIET 109
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V N+ + L P+F +G ++ + R ++GES+G A+V A AV LDG
Sbjct: 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRLDG 79
Query: 153 LDVGGREMRVRFS-----VEVNPRGRNLET 177
V GRE+ V+F+ E +GR +ET
Sbjct: 80 RMVDGREITVQFAKYGPNAERIHKGRIIET 109
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V N+ + L P+F +G ++ + R ++GES+G A+V A AV LDG
Sbjct: 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRLDG 79
Query: 153 LDVGGREMRVRFS-----VEVNPRGRNLET 177
V GRE+ V+F+ E +GR +ET
Sbjct: 80 RMVDGREITVQFAKYGPNAERIHKGRIIET 109
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V N+ + L P+F +G ++ + R ++GES+G A+V A AV LDG
Sbjct: 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRLDG 79
Query: 153 LDVGGREMRVRFS-----VEVNPRGRNLET 177
V GRE+ V+F+ E +GR +ET
Sbjct: 80 RMVDGREITVQFAKYGPNAERIHKGRIIET 109
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
T +Y+ LP + + + L+ +F+ G I+ A+V + +G SKG +V + I A NA+
Sbjct: 451 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIV 510
Query: 149 ALDGLDVGGREMRVRFS 165
A++G + GR + VR +
Sbjct: 511 AMNGYRLEGRTIAVRVA 527
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-S 251
KL++G ++ S +R F+R+G+V +++ D GR R + FI++ + E +A+ +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 252 LNGTEFCGRKIVVRQGVDR 270
++ E GR + V +R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 193 KLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFISYLSERERDAAM-S 251
KL++G ++ S +R F+R+G+V +++ D GR R + FI++ + E +A+ +
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 252 LNGTEFCGRKIVVRQGVDR 270
++ E GR + V +R
Sbjct: 101 MDNKELDGRTVRVNYATER 119
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 180 SSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGRRRAYAFIS 239
SS + + + KL++G L+ + + +R F +G+V R++ D + GR R + F++
Sbjct: 24 SSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVN 83
Query: 240 YLSERERDAAMSLNG 254
+ SE +A+S++G
Sbjct: 84 FTSEESATSALSMDG 98
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVY+ +P + L + G + AEV R + E+KG A+VT + A A+
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEV--AEV-RVMKGKEAKGYAFVTFKTKELASKALK 157
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + GR+++ S + H+L++G++ T ED+
Sbjct: 158 ELNNSEFKGRKIKCSPS-----------------------QVKHRLFIGSVPKEWTVEDM 194
Query: 209 RYLFARFG-NVASVRLLQDLK-QGRRRAYAFISY 240
+ + A+ G V SV LL+D + R R +AFI Y
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEY 228
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVY+ +P + L + G + AEV R + E+KG A+VT + A A+
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEV--AEV-RVMKGKEAKGYAFVTFKTKELASKALK 157
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + GR+++ S + H+L++G++ T ED+
Sbjct: 158 ELNNSEFKGRKIKCSPS-----------------------QVKHRLFIGSVPKEWTVEDM 194
Query: 209 RYLFARFG-NVASVRLLQDLK-QGRRRAYAFISY 240
+ + A+ G V SV LL+D + R R +AFI Y
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEY 228
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVY+ +P + L + G + AEV R + E+KG A+VT + A A+
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEV--AEV-RVMKGKEAKGYAFVTFKTKELASKALK 157
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + GR+++ S + H+L++G++ T ED+
Sbjct: 158 ELNNSEFKGRKIKCSPS-----------------------QVKHRLFIGSVPKEWTVEDM 194
Query: 209 RYLFARFG-NVASVRLLQDLK-QGRRRAYAFISY 240
+ + A+ G V SV LL+D + R R +AFI Y
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEY 228
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 28/154 (18%)
Query: 89 TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVS 148
+EVY+ +P + L + G + AEV R + E+KG A+VT + A A+
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEV--AEV-RVMKGKEAKGYAFVTFKTKELASKALK 157
Query: 149 ALDGLDVGGREMRVRFSVEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDV 208
L+ + GR+++ S + H+L++G++ T ED+
Sbjct: 158 ELNNSEFKGRKIKCSPS-----------------------QVKHRLFIGSVPKEWTVEDM 194
Query: 209 RYLFARFG-NVASVRLLQDLK-QGRRRAYAFISY 240
+ + A+ G V SV LL+D + R R +AFI Y
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEY 228
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 85 EGRP-TEVYVCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSA 143
EG P +++ ++P+ ++L F+P G ++SA+V +G SK +V+ S +A
Sbjct: 343 EGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAA 402
Query: 144 KNAVSALDGLDVGGREMRVRFSVEVNP 170
++A+S ++G +GG++++V+ + P
Sbjct: 403 QSAISMMNGCQLGGKKLKVQHKRDNKP 429
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V N+ + L P+F +G ++ + + ++GES+G A+V A AV LDG
Sbjct: 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDG 79
Query: 153 LDVGGREMRVRFS-----VEVNPRGRNLET 177
V GRE+ V+F+ E +GR +ET
Sbjct: 80 RMVDGREITVQFAKYGPNAERIQKGRIIET 109
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V N+ + L P+F +G ++ + + ++GES+G A+V A AV LDG
Sbjct: 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDG 79
Query: 153 LDVGGREMRVRFS-----VEVNPRGRNLET 177
V GRE+ V+F+ E +GR +ET
Sbjct: 80 RMVDGREITVQFAKYGPNAERIQKGRIIET 109
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V N+ + L P+F +G ++ + + ++GES+G A+V A AV LDG
Sbjct: 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDG 79
Query: 153 LDVGGREMRVRFS-----VEVNPRGRNLET 177
V GRE+ V+F+ E +GR +ET
Sbjct: 80 RMVDGREITVQFAKYGPNAERIQKGRIIET 109
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 93 VCNLPRSCDTEQLLPMFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG 152
V N+ + L P+F +G ++ + + ++GES+G A+V A AV LDG
Sbjct: 20 VLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDG 79
Query: 153 LDVGGREMRVRFS-----VEVNPRGRNLET 177
V GRE+ V+F+ E +GR +ET
Sbjct: 80 RMVDGREITVQFAKYGPNAERIQKGRIIET 109