Miyakogusa Predicted Gene
- Lj1g3v5060520.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v5060520.1 Non Characterized Hit- tr|I1NCQ2|I1NCQ2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41436 PE,85.6,0,RNA
recognition motif,RNA recognition motif domain, eukaryote; RNA
recognition motif,RNA recognition,CUFF.33957.1
(483 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 619 e-177
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 619 e-177
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 619 e-177
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 407 e-113
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 407 e-113
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 407 e-113
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 396 e-110
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 396 e-110
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 396 e-110
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 396 e-110
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 375 e-104
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 342 5e-94
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 150 2e-36
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 150 2e-36
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 150 2e-36
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 134 3e-31
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 134 3e-31
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 134 3e-31
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 134 3e-31
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 95 2e-19
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 86 7e-17
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 84 4e-16
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 84 4e-16
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 80 3e-15
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 8e-15
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 79 1e-14
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 78 2e-14
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 77 4e-14
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 77 5e-14
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 74 2e-13
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 74 2e-13
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 74 4e-13
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 74 5e-13
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 8e-13
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 8e-13
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 73 8e-13
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 1e-12
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 2e-12
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 71 2e-12
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 71 2e-12
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 4e-12
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 5e-12
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 70 5e-12
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 6e-12
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 68 2e-11
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 68 2e-11
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 5e-11
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-10
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 5e-10
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 5e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-10
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 62 1e-09
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-09
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 61 3e-09
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 7e-09
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 7e-09
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 59 9e-09
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 58 2e-08
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 57 5e-08
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 7e-08
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 55 2e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 54 2e-07
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 54 2e-07
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-07
Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 4e-07
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 6e-07
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 6e-07
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 52 1e-06
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 52 1e-06
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC | chr7... 52 1e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 52 1e-06
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 52 1e-06
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 52 1e-06
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 51 2e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 50 4e-06
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 50 4e-06
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 50 7e-06
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 7e-06
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 7e-06
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 50 7e-06
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 49 8e-06
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 49 8e-06
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 49 8e-06
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 49 9e-06
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 49 9e-06
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 49 9e-06
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 325/457 (71%), Positives = 353/457 (77%), Gaps = 9/457 (1%)
Query: 1 MSEGAEIDERVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVXXXXXXXXXXX 60
MSEGAEID+RVDL SV
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEG--SVEEHEYEETAAE 58
Query: 61 XDGKDQLAEAEKGDIDTEFVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDA 120
KDQ E EK D EED KP LIDE+E++KHDELL+ PPHGSEVFIGGLPRD
Sbjct: 59 AGQKDQFPEGEKSD---HGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDT 115
Query: 121 CEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTL 180
+DD+RELCEPMGDI+E++L+KDR+TG++KGYAFV +KTKE AQKAI+DIHNKEFKGKTL
Sbjct: 116 SDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTL 175
Query: 181 RCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYY 240
RC LSETKHRLFIGN+PKT TEDEFRKAV+GVGPGVESI+LIKDPQN S+NRGFAFVLYY
Sbjct: 176 RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYY 235
Query: 241 NNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTDQ 299
NNACAD+SRQKMSS FKL G TPTVTWADPK SPD S A+SQVKALYVKNIPENVTT+Q
Sbjct: 236 NNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQ 295
Query: 300 LKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLA 359
LKELFRRHGEVTKVVMPPGK GKRDFGFIH+AERSSALKAVKETEKYEIDGQ LEVV+A
Sbjct: 296 LKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
Query: 360 KPQAEKRPD-AYAFNPGVHPNHLPHA--XXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRG 416
KPQAEK+PD YA+NPG+HPNHLPH G AA AYQQPMIYGRG
Sbjct: 356 KPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRG 415
Query: 417 PMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAARPRRN 453
PMPAGMQMVPMVLPDGRIGYVLQQPGVQVP RPRRN
Sbjct: 416 PMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRN 452
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 325/457 (71%), Positives = 353/457 (77%), Gaps = 9/457 (1%)
Query: 1 MSEGAEIDERVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVXXXXXXXXXXX 60
MSEGAEID+RVDL SV
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEG--SVEEHEYEETAAE 58
Query: 61 XDGKDQLAEAEKGDIDTEFVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDA 120
KDQ E EK D EED KP LIDE+E++KHDELL+ PPHGSEVFIGGLPRD
Sbjct: 59 AGQKDQFPEGEKSD---HGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDT 115
Query: 121 CEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTL 180
+DD+RELCEPMGDI+E++L+KDR+TG++KGYAFV +KTKE AQKAI+DIHNKEFKGKTL
Sbjct: 116 SDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTL 175
Query: 181 RCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYY 240
RC LSETKHRLFIGN+PKT TEDEFRKAV+GVGPGVESI+LIKDPQN S+NRGFAFVLYY
Sbjct: 176 RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYY 235
Query: 241 NNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTDQ 299
NNACAD+SRQKMSS FKL G TPTVTWADPK SPD S A+SQVKALYVKNIPENVTT+Q
Sbjct: 236 NNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQ 295
Query: 300 LKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLA 359
LKELFRRHGEVTKVVMPPGK GKRDFGFIH+AERSSALKAVKETEKYEIDGQ LEVV+A
Sbjct: 296 LKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
Query: 360 KPQAEKRPD-AYAFNPGVHPNHLPHA--XXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRG 416
KPQAEK+PD YA+NPG+HPNHLPH G AA AYQQPMIYGRG
Sbjct: 356 KPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRG 415
Query: 417 PMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAARPRRN 453
PMPAGMQMVPMVLPDGRIGYVLQQPGVQVP RPRRN
Sbjct: 416 PMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRN 452
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 325/457 (71%), Positives = 353/457 (77%), Gaps = 9/457 (1%)
Query: 1 MSEGAEIDERVDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVXXXXXXXXXXX 60
MSEGAEID+RVDL SV
Sbjct: 1 MSEGAEIDDRVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEG--SVEEHEYEETAAE 58
Query: 61 XDGKDQLAEAEKGDIDTEFVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDA 120
KDQ E EK D EED KP LIDE+E++KHDELL+ PPHGSEVFIGGLPRD
Sbjct: 59 AGQKDQFPEGEKSD---HGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDT 115
Query: 121 CEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTL 180
+DD+RELCEPMGDI+E++L+KDR+TG++KGYAFV +KTKE AQKAI+DIHNKEFKGKTL
Sbjct: 116 SDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTL 175
Query: 181 RCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYY 240
RC LSETKHRLFIGN+PKT TEDEFRKAV+GVGPGVESI+LIKDPQN S+NRGFAFVLYY
Sbjct: 176 RCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQNQSRNRGFAFVLYY 235
Query: 241 NNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHS-ASSQVKALYVKNIPENVTTDQ 299
NNACAD+SRQKMSS FKL G TPTVTWADPK SPD S A+SQVKALYVKNIPENVTT+Q
Sbjct: 236 NNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPDQSAAASQVKALYVKNIPENVTTEQ 295
Query: 300 LKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLA 359
LKELFRRHGEVTKVVMPPGK GKRDFGFIH+AERSSALKAVKETEKYEIDGQ LEVV+A
Sbjct: 296 LKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIA 355
Query: 360 KPQAEKRPD-AYAFNPGVHPNHLPHA--XXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRG 416
KPQAEK+PD YA+NPG+HPNHLPH G AA AYQQPMIYGRG
Sbjct: 356 KPQAEKKPDGGYAYNPGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAAAAYQQPMIYGRG 415
Query: 417 PMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAARPRRN 453
PMPAGMQMVPMVLPDGRIGYVLQQPGVQVP RPRRN
Sbjct: 416 PMPAGMQMVPMVLPDGRIGYVLQQPGVQVPGPRPRRN 452
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/359 (55%), Positives = 270/359 (75%), Gaps = 9/359 (2%)
Query: 90 IDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDN 149
+D+DEK+KH ELL+LPPH SEV++GG+P DA +DL+E CE +G++++VR+MK +D +N
Sbjct: 91 LDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASEN 150
Query: 150 KGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAV 209
KG+AFV ++ E A KAIE+++N EFKG+ ++CS S+ K+RLFIGN+P++ E + +K V
Sbjct: 151 KGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVV 210
Query: 210 DGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWA 269
+GPGV ++EL+KD +N S NRGFAF+ Y+NN CA+Y RQKM S SFKL N+PTV+WA
Sbjct: 211 TDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA 270
Query: 270 DPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD-FGF 328
DPKNS D SASSQVKA+YVKN+P+NVT +QLK+LF HG++TKVV+PP K G +++ GF
Sbjct: 271 DPKNS-DSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGF 329
Query: 329 IHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNP---GVHPNHLPHAX 385
+HFAERS+A+KA+K TE+YE+DGQ LE LAKPQA+++ A N G+ P++ P
Sbjct: 330 VHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQK--AVVSNTQTQGLLPSY-PPPV 386
Query: 386 XXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQ 444
GYG AP QP++YG G P GM M+PM+L DGRIGYVLQQPG+Q
Sbjct: 387 GYGLVGNPYGALGAGYG-APGLAQPLMYGPGQTPGGMAMMPMLLADGRIGYVLQQPGLQ 444
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/359 (55%), Positives = 270/359 (75%), Gaps = 9/359 (2%)
Query: 90 IDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDN 149
+D+DEK+KH ELL+LPPH SEV++GG+P DA +DL+E CE +G++++VR+MK +D +N
Sbjct: 91 LDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASEN 150
Query: 150 KGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAV 209
KG+AFV ++ E A KAIE+++N EFKG+ ++CS S+ K+RLFIGN+P++ E + +K V
Sbjct: 151 KGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVV 210
Query: 210 DGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWA 269
+GPGV ++EL+KD +N S NRGFAF+ Y+NN CA+Y RQKM S SFKL N+PTV+WA
Sbjct: 211 TDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA 270
Query: 270 DPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD-FGF 328
DPKNS D SASSQVKA+YVKN+P+NVT +QLK+LF HG++TKVV+PP K G +++ GF
Sbjct: 271 DPKNS-DSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGF 329
Query: 329 IHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNP---GVHPNHLPHAX 385
+HFAERS+A+KA+K TE+YE+DGQ LE LAKPQA+++ A N G+ P++ P
Sbjct: 330 VHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQK--AVVSNTQTQGLLPSY-PPPV 386
Query: 386 XXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQ 444
GYG AP QP++YG G P GM M+PM+L DGRIGYVLQQPG+Q
Sbjct: 387 GYGLVGNPYGALGAGYG-APGLAQPLMYGPGQTPGGMAMMPMLLADGRIGYVLQQPGLQ 444
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/359 (55%), Positives = 270/359 (75%), Gaps = 9/359 (2%)
Query: 90 IDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDN 149
+D+DEK+KH ELL+LPPH SEV++GG+P DA +DL+E CE +G++++VR+MK +D +N
Sbjct: 91 LDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASEN 150
Query: 150 KGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAV 209
KG+AFV ++ E A KAIE+++N EFKG+ ++CS S+ K+RLFIGN+P++ E + +K V
Sbjct: 151 KGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVV 210
Query: 210 DGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWA 269
+GPGV ++EL+KD +N S NRGFAF+ Y+NN CA+Y RQKM S SFKL N+PTV+WA
Sbjct: 211 TDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA 270
Query: 270 DPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD-FGF 328
DPKNS D SASSQVKA+YVKN+P+NVT +QLK+LF HG++TKVV+PP K G +++ GF
Sbjct: 271 DPKNS-DSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGF 329
Query: 329 IHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNP---GVHPNHLPHAX 385
+HFAERS+A+KA+K TE+YE+DGQ LE LAKPQA+++ A N G+ P++ P
Sbjct: 330 VHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQK--AVVSNTQTQGLLPSY-PPPV 386
Query: 386 XXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQ 444
GYG AP QP++YG G P GM M+PM+L DGRIGYVLQQPG+Q
Sbjct: 387 GYGLVGNPYGALGAGYG-APGLAQPLMYGPGQTPGGMAMMPMLLADGRIGYVLQQPGLQ 444
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/365 (55%), Positives = 270/365 (73%), Gaps = 11/365 (3%)
Query: 88 PLIDEDE--KQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRD 145
PL +EDE K+KH ELLALPPHGSEV+IGG+P + E DLR C+ +G++ EVR+MK ++
Sbjct: 78 PLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE 137
Query: 146 TGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEF 205
KGYAFV FKTKE A KA+++++N EFKG+ ++CS S+ KHRLFIG+VPK T ++
Sbjct: 138 A---KGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDM 194
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT 265
+K V VGPGV S+EL+KDPQ+ S+NRGFAF+ Y+N+ACA+YSRQKMS+S+FKL N
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAI 254
Query: 266 VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
V+WADP+NS + S+SSQVKA+YVKN+PEN+T ++LKELF HG++TKV +PP K G ++
Sbjct: 255 VSWADPRNS-ESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKS 313
Query: 326 -FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPD--AYAFNPGVHPNHLP 382
+GF+HFA+RSSA+KA+K TEKYEI+GQ LE LAKPQA+++ + +FN V P + P
Sbjct: 314 RYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPP 373
Query: 383 HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPG 442
A + P++YG G PAGM M+PM+LPDGRI YVLQQPG
Sbjct: 374 --PLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPG 431
Query: 443 VQVPA 447
+Q P+
Sbjct: 432 LQQPS 436
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/365 (55%), Positives = 270/365 (73%), Gaps = 11/365 (3%)
Query: 88 PLIDEDE--KQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRD 145
PL +EDE K+KH ELLALPPHGSEV+IGG+P + E DLR C+ +G++ EVR+MK ++
Sbjct: 78 PLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE 137
Query: 146 TGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEF 205
KGYAFV FKTKE A KA+++++N EFKG+ ++CS S+ KHRLFIG+VPK T ++
Sbjct: 138 A---KGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDM 194
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT 265
+K V VGPGV S+EL+KDPQ+ S+NRGFAF+ Y+N+ACA+YSRQKMS+S+FKL N
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAI 254
Query: 266 VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
V+WADP+NS + S+SSQVKA+YVKN+PEN+T ++LKELF HG++TKV +PP K G ++
Sbjct: 255 VSWADPRNS-ESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKS 313
Query: 326 -FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPD--AYAFNPGVHPNHLP 382
+GF+HFA+RSSA+KA+K TEKYEI+GQ LE LAKPQA+++ + +FN V P + P
Sbjct: 314 RYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPP 373
Query: 383 HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPG 442
A + P++YG G PAGM M+PM+LPDGRI YVLQQPG
Sbjct: 374 --PLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPG 431
Query: 443 VQVPA 447
+Q P+
Sbjct: 432 LQQPS 436
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/365 (55%), Positives = 270/365 (73%), Gaps = 11/365 (3%)
Query: 88 PLIDEDE--KQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRD 145
PL +EDE K+KH ELLALPPHGSEV+IGG+P + E DLR C+ +G++ EVR+MK ++
Sbjct: 78 PLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE 137
Query: 146 TGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEF 205
KGYAFV FKTKE A KA+++++N EFKG+ ++CS S+ KHRLFIG+VPK T ++
Sbjct: 138 A---KGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDM 194
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT 265
+K V VGPGV S+EL+KDPQ+ S+NRGFAF+ Y+N+ACA+YSRQKMS+S+FKL N
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAI 254
Query: 266 VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
V+WADP+NS + S+SSQVKA+YVKN+PEN+T ++LKELF HG++TKV +PP K G ++
Sbjct: 255 VSWADPRNS-ESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKS 313
Query: 326 -FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPD--AYAFNPGVHPNHLP 382
+GF+HFA+RSSA+KA+K TEKYEI+GQ LE LAKPQA+++ + +FN V P + P
Sbjct: 314 RYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPP 373
Query: 383 HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPG 442
A + P++YG G PAGM M+PM+LPDGRI YVLQQPG
Sbjct: 374 --PLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPG 431
Query: 443 VQVPA 447
+Q P+
Sbjct: 432 LQQPS 436
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/365 (55%), Positives = 270/365 (73%), Gaps = 11/365 (3%)
Query: 88 PLIDEDE--KQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRD 145
PL +EDE K+KH ELLALPPHGSEV+IGG+P + E DLR C+ +G++ EVR+MK ++
Sbjct: 78 PLDEEDEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE 137
Query: 146 TGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEF 205
KGYAFV FKTKE A KA+++++N EFKG+ ++CS S+ KHRLFIG+VPK T ++
Sbjct: 138 A---KGYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDM 194
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT 265
+K V VGPGV S+EL+KDPQ+ S+NRGFAF+ Y+N+ACA+YSRQKMS+S+FKL N
Sbjct: 195 KKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAI 254
Query: 266 VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
V+WADP+NS + S+SSQVKA+YVKN+PEN+T ++LKELF HG++TKV +PP K G ++
Sbjct: 255 VSWADPRNS-ESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKS 313
Query: 326 -FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPD--AYAFNPGVHPNHLP 382
+GF+HFA+RSSA+KA+K TEKYEI+GQ LE LAKPQA+++ + +FN V P + P
Sbjct: 314 RYGFVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPP 373
Query: 383 HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPG 442
A + P++YG G PAGM M+PM+LPDGRI YVLQQPG
Sbjct: 374 --PLGYGMVGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLLPDGRIAYVLQQPG 431
Query: 443 VQVPA 447
+Q P+
Sbjct: 432 LQQPS 436
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/360 (52%), Positives = 257/360 (71%), Gaps = 9/360 (2%)
Query: 89 LIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGD 148
L D+DEK+KH ELL+LP H SEV++GG+P DA +DL+E CE +G++++VR+ K +D +
Sbjct: 330 LDDDDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASE 389
Query: 149 NKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKA 208
N+G+AFV +++ E A KAI++++N EFK ++CS S+ K RLFIGN+P++ E + +K
Sbjct: 390 NRGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKV 449
Query: 209 VDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTW 268
V +GPGV ++ELIKD +N S NRG+AF+ Y+NN CA+YSRQKM+S SFKL N PTV W
Sbjct: 450 VSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNW 509
Query: 269 ADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD-FG 327
A+PKN+ D SASSQVK +YVKN+P+NVT +QLK+LF HG++TKVV+PP K G +++ G
Sbjct: 510 AEPKNA-DSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIG 568
Query: 328 FIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFN---PGVHPNHLPHA 384
F+HFAERS+A+KA+K TEKY +DGQ+LE LAK QA+ P A N G P + PH
Sbjct: 569 FVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQAD--PKAVVSNIQTQGSLPRYPPHV 626
Query: 385 XXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQ 444
GYG AP QP YG G P G+ M+P +L D RI YVLQQPG+Q
Sbjct: 627 -GYGLDGNPYGVLGAGYG-APGLAQPFTYGLGQTPGGIAMMPKLLVDRRIRYVLQQPGLQ 684
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 342 bits (877), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 155/263 (58%), Positives = 215/263 (81%), Gaps = 2/263 (0%)
Query: 90 IDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDN 149
+D+DEK+KH ELL+LPPH SEV++GG+P DA +DL+E CE +G++++VR+MK +D +N
Sbjct: 91 LDDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASEN 150
Query: 150 KGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAV 209
KG+AFV ++ E A KAIE+++N EFKG+ ++CS S+ K+RLFIGN+P++ E + +K V
Sbjct: 151 KGFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVV 210
Query: 210 DGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWA 269
+GPGV ++EL+KD +N S NRGFAF+ Y+NN CA+Y RQKM S SFKL N+PTV+WA
Sbjct: 211 TDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA 270
Query: 270 DPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD-FGF 328
DPKNS D SASSQVKA+YVKN+P+NVT +QLK+LF HG++TKVV+PP K G +++ GF
Sbjct: 271 DPKNS-DSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGF 329
Query: 329 IHFAERSSALKAVKETEKYEIDG 351
+HFAERS+A+KA+K TE+YE+DG
Sbjct: 330 VHFAERSNAMKALKNTERYELDG 352
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 146/271 (53%), Gaps = 4/271 (1%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
E+F+GGL RD E+DL+++ + +G++LEVRL K+ T N+GYA V F KE A+KA+ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 170 IHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVG-PGVESIELIKDPQNP 228
+ N +GK S SE LF+GN+ T T++ ++ + G GVE+I L+ D Q+
Sbjct: 479 MKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHE 538
Query: 229 SKNRGFAFVLY--YNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKAL 286
+RGFAF+ + + +A Y R + F T V +A+P PD +QVK++
Sbjct: 539 GLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSV 598
Query: 287 YVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-DFGFIHFAERSSALKAVKETE 345
++ +P + D ++E + +GE+ K+V+ KR D GF+ F+ +AL V
Sbjct: 599 FINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVN 658
Query: 346 KYEIDGQVLEVVLAKPQAEKRPDAYAFNPGV 376
K E+ ++ L + P A G+
Sbjct: 659 KSELGDGTSKIKLRARLSNPLPKTQAVKGGM 689
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 146/271 (53%), Gaps = 4/271 (1%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
E+F+GGL RD E+DL+++ + +G++LEVRL K+ T N+GYA V F KE A+KA+ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 170 IHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVG-PGVESIELIKDPQNP 228
+ N +GK S SE LF+GN+ T T++ ++ + G GVE+I L+ D Q+
Sbjct: 479 MKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHE 538
Query: 229 SKNRGFAFVLY--YNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKAL 286
+RGFAF+ + + +A Y R + F T V +A+P PD +QVK++
Sbjct: 539 GLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSV 598
Query: 287 YVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-DFGFIHFAERSSALKAVKETE 345
++ +P + D ++E + +GE+ K+V+ KR D GF+ F+ +AL V
Sbjct: 599 FINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVN 658
Query: 346 KYEIDGQVLEVVLAKPQAEKRPDAYAFNPGV 376
K E+ ++ L + P A G+
Sbjct: 659 KSELGDGTSKIKLRARLSNPLPKTQAVKGGM 689
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 146/271 (53%), Gaps = 4/271 (1%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
E+F+GGL RD E+DL+++ + +G++LEVRL K+ T N+GYA V F KE A+KA+ +
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 170 IHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVG-PGVESIELIKDPQNP 228
+ N +GK S SE LF+GN+ T T++ ++ + G GVE+I L+ D Q+
Sbjct: 479 MKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHE 538
Query: 229 SKNRGFAFVLY--YNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKAL 286
+RGFAF+ + + +A Y R + F T V +A+P PD +QVK++
Sbjct: 539 GLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSV 598
Query: 287 YVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-DFGFIHFAERSSALKAVKETE 345
++ +P + D ++E + +GE+ K+V+ KR D GF+ F+ +AL V
Sbjct: 599 FINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVN 658
Query: 346 KYEIDGQVLEVVLAKPQAEKRPDAYAFNPGV 376
K E+ ++ L + P A G+
Sbjct: 659 KSELGDGTSKIKLRARLSNPLPKTQAVKGGM 689
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 132/235 (56%), Gaps = 3/235 (1%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
EVF+GGL +DA EDDLR++ +G + EVRLM + T NKG+AF+ F+ E+A++A+ +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 170 IHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVG-PGVESIELIKDPQNP 228
+ N GK + S+ L++GN+ KT T++ ++ + G VE I L++D +
Sbjct: 275 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDK 334
Query: 229 SKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT-VTWADPKNSPDHSASSQVKALY 287
NRGFAF+ + + + A + +++ + P V++AD P SQVK ++
Sbjct: 335 GTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVF 394
Query: 288 VKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-DFGFIHFAERSSALKAV 341
+ +P + D ++ L +++GEV K+ + +R D+GF+ F +A++
Sbjct: 395 IDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCA 449
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 132/235 (56%), Gaps = 3/235 (1%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
EVF+GGL +DA EDDLR++ +G + EVRLM + T NKG+AF+ F+ E+A++A+ +
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 170 IHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVG-PGVESIELIKDPQNP 228
+ N GK + S+ L++GN+ KT T++ ++ + G VE I L++D +
Sbjct: 275 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDK 334
Query: 229 SKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT-VTWADPKNSPDHSASSQVKALY 287
NRGFAF+ + + + A + +++ + P V++AD P SQVK ++
Sbjct: 335 GTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVF 394
Query: 288 VKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-DFGFIHFAERSSALKAV 341
+ +P + D ++ L +++GEV K+ + +R D+GF+ F +A++
Sbjct: 395 IDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCA 449
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 132/235 (56%), Gaps = 3/235 (1%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
EVF+GGL +DA EDDLR++ +G + EVRLM + T NKG+AF+ F+ E+A++A+ +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 170 IHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVG-PGVESIELIKDPQNP 228
+ N GK + S+ L++GN+ KT T++ ++ + G VE I L++D +
Sbjct: 276 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDK 335
Query: 229 SKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT-VTWADPKNSPDHSASSQVKALY 287
NRGFAF+ + + + A + +++ + P V++AD P SQVK ++
Sbjct: 336 GTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVF 395
Query: 288 VKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-DFGFIHFAERSSALKAV 341
+ +P + D ++ L +++GEV K+ + +R D+GF+ F +A++
Sbjct: 396 IDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCA 450
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 132/235 (56%), Gaps = 3/235 (1%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
EVF+GGL +DA EDDLR++ +G + EVRLM + T NKG+AF+ F+ E+A++A+ +
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 170 IHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVG-PGVESIELIKDPQNP 228
+ N GK + S+ L++GN+ KT T++ ++ + G VE I L++D +
Sbjct: 276 LKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDK 335
Query: 229 SKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT-VTWADPKNSPDHSASSQVKALY 287
NRGFAF+ + + + A + +++ + P V++AD P SQVK ++
Sbjct: 336 GTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVF 395
Query: 288 VKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-DFGFIHFAERSSALKAV 341
+ +P + D ++ L +++GEV K+ + +R D+GF+ F +A++
Sbjct: 396 IDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCA 450
>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:30979896-30974591 | 20130731
Length = 782
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 173/372 (46%), Gaps = 48/372 (12%)
Query: 94 EKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYA 153
E QK EL EVF+GGL ++A E DLR++ +G+I EVR+ + T NKG+A
Sbjct: 187 ETQKQKEL--------EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFA 238
Query: 154 FVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETKHR--LFIGNVPKTVTEDEFRKAVDG 211
+ F+T E ++A+ ++ N GK +++ + L++ N+ K+ ++ ++ +
Sbjct: 239 LLRFETVEHVKRALAELKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKH 298
Query: 212 VGPGVES---IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT-VT 267
GVES + L++D N N G AF+ + +++ + + +++ + + P V+
Sbjct: 299 Y--GVESFKDLTLLEDDNNEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPAEVS 356
Query: 268 WADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR-DF 326
+A+ +QVK +++ +P + D ++ L +++G V KV + G +R ++
Sbjct: 357 FANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNY 416
Query: 327 GFIHFAERSSALKAVKETEKYEI-DGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHLPHAX 385
GF+ F ++A++ + + +G V A+ RP P V H+PH
Sbjct: 417 GFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLS---RP-----LPKVRGKHVPH-- 466
Query: 386 XXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQV 445
G P+ +P R PA P R +V ++ G ++
Sbjct: 467 ------RDISGRKIGRLERPSRSRPAPRSR---PA---------PQSRPAHVFRRLGSRI 508
Query: 446 PAARPR--RNER 455
P ARP RN R
Sbjct: 509 PPARPSSARNRR 520
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 29/279 (10%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S +++G L + + L +L + ++ VR+ +D+ T + GY +V + +A A+E
Sbjct: 25 SSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAME 84
Query: 169 DIHNKEFKGKTLRCSLSETKHR-----------LFIGNVPKTVTEDEFRKAVDGVGPGVE 217
+++ GK +R S HR LFI N+ ++ + G V
Sbjct: 85 NLNYVPLNGKPIRIMFS---HRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFG-NVL 140
Query: 218 SIELIKDPQNPSKNRGFAFVLYYNNACADYSRQK---MSSSSFKLYGNTPTVTWADPKNS 274
S ++ D SK GF V + N+ A + +K M + K+Y ++S
Sbjct: 141 SCKVAMDSNGHSKGHGF--VQFDNDQSAKNAIEKLDGMLMNDKKVY--VGYFVRCQERSS 196
Query: 275 PDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAER 334
P + +YVKN+ E+ T + LK+LF G +T V++ G + FGF++F
Sbjct: 197 PKFTN------VYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKCFGFVNFQSS 250
Query: 335 SSALKAVKETEKYEI-DGQVLEVVLAKPQAEKRPDAYAF 372
SA AV++ DG+VL V A+ ++E+ + AF
Sbjct: 251 DSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAF 289
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 124/284 (43%), Gaps = 26/284 (9%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +FI L L E G++L ++ D + G +KG+ FV F + A+ AIE
Sbjct: 113 ANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIE 171
Query: 169 DIHN------KEFKGKTLRCS--LSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIE 220
+ K + G +RC S +++ N+ ++ T ++ ++ + G + S+
Sbjct: 172 KLDGMLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLSESYTYEDLKQLFNSFGV-ITSVL 230
Query: 221 LIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSAS 280
++K SK F FV + ++ A + +K++ S+ G V A K+ +
Sbjct: 231 IMKYDNGNSK--CFGFVNFQSSDSAATAVEKLNGSTTN-DGKVLFVGRAQKKSEREAELK 287
Query: 281 S-------------QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFG 327
+ Q LY+KNI +++ ++LKELF G +T + G + G
Sbjct: 288 AFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGVG 347
Query: 328 FIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYA 371
F+ F A KA+ E I + + V +A+ + E++ A
Sbjct: 348 FVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKEERKAQLQA 391
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 81 EEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRL 140
E + E ++++ +++++ G+ +++ + + E+ L+EL G I ++
Sbjct: 281 EREAELKAFFEQEKLKRYEKF-----QGANLYLKNIDKSLNEEKLKELFSEFGTITSCKV 335
Query: 141 MKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETK 188
M D G +KG FVAF T EEA KAI++++ K K + S+++ K
Sbjct: 336 MSDA-RGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRK 382
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 159/367 (43%), Gaps = 54/367 (14%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+FI L + L + G+IL ++ D +G +KGY FV F T+E AQKAIE +
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 171 HN------KEFKGKTLRCSLSETK------HRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
+ + + G LR E+ + +F+ N+ ++ T+DE +K G + S
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTDDELKKTFGEFGT-ITS 241
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDH- 277
+++D K++ F FV + + D +R + + K+ V A K+ +H
Sbjct: 242 AVVMRD--GDGKSKCFGFVNF--ESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHE 297
Query: 278 ------------SASSQVKALYVKNIPENVTTDQLKELFRRHGEVT--KVVMPPGKIGGK 323
+ Q LYVKN+ +++ ++LKELF +G +T KV+ P G
Sbjct: 298 LKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPN--GVS 355
Query: 324 RDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHLPH 383
R GF+ F+ A +A+ E + + L V LA+ + ++R A + P +P
Sbjct: 356 RGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPVSMPP 415
Query: 384 AXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGV 443
+ P Q + YG+GP P ++P + G+ QQ
Sbjct: 416 SVAPRMPMYPP--------GGPGMGQQIFYGQGP--------PAIIPS-QPGFGYQQQ-- 456
Query: 444 QVPAARP 450
VP RP
Sbjct: 457 LVPGMRP 463
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 121/267 (45%), Gaps = 16/267 (5%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++G L + + L +L +G ++ VR+ +D T + GY +V + ++A +A++
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 169 DIHNKEFKGKTLRCSLSET--------KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIE 220
++ + +R S + +FI N+ K + G + S +
Sbjct: 94 VLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFG-NILSCK 152
Query: 221 LIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSF--KLYGNTPTVTWADPKNSPDHS 278
+ D SK G+ FV + A + +K++ K P + + +++ D +
Sbjct: 153 VAVDGSGQSK--GYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRA 210
Query: 279 ASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSAL 338
+ V +VKN+ E+ T D+LK+ F G +T V+ G + FGF++F A
Sbjct: 211 KFNNV---FVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAA 267
Query: 339 KAVKETEKYEIDGQVLEVVLAKPQAEK 365
+AV+ +ID + V A+ ++E+
Sbjct: 268 RAVEALNGKKIDDKEWYVGKAQKKSER 294
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 14/142 (9%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+G +PR A E+D+R L E G+++EV L+KDR TG ++G F+ + T EEA +AI
Sbjct: 88 AKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 147
Query: 169 DIHNKEFKGKTL-----------RCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVE 217
+HN+ + R L +++LF+G++ K + E + G +E
Sbjct: 148 ALHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYG-RIE 206
Query: 218 SIELIKDPQNPSKNRGFAFVLY 239
+ L++D Q ++RG FV Y
Sbjct: 207 DVYLMRDDQK--QSRGCGFVKY 226
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 93/184 (50%), Gaps = 9/184 (4%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
+LF+G+VP+T TE++ R + G VE + LIKD + +++G F+ Y + AD +
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVE-VALIKD-RKTGQHQGCCFIKYATSEEADQAI 146
Query: 250 QKMSSSSFKLYGNTPT-VTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHG 308
+ + + G P V +AD + + + + K L+V ++ + + +++E+F ++G
Sbjct: 147 RALHNRHTLPGGVGPIQVRYADGER--ERLGAVEYK-LFVGSLNKQASVKEVEEVFSKYG 203
Query: 309 EVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEK-YEIDG--QVLEVVLAKPQAEK 365
+ V + R GF+ ++ R AL A+ Y + G Q L V A P+ +
Sbjct: 204 RIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPR 263
Query: 366 RPDA 369
+ D+
Sbjct: 264 QGDS 267
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 134/303 (44%), Gaps = 55/303 (18%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
++IG L E+ L G+++ +++++++ TG +GY F+ F + A++ ++
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 171 HNKEFKG--KTLRCSLSET-----------KHRLFIGNVPKTVTEDEFRKAVDGVGPGVE 217
+ + G +T R + + H +F+G++ VT+ ++ V
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVR 136
Query: 218 SIELIKDPQNPSKNRGFAFVLYY-----NNACADYSRQKMSSSSFKLYGNTPTVTWADPK 272
+++ DP N +++G+ FV + N A ++ + S+ ++ TP T +
Sbjct: 137 GAKVVTDP-NTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQ 195
Query: 273 NS-----------------------------PDHSASSQVKALYVKNIPENVTTDQLKEL 303
N P++ ++ +YV N+ NV+ ++LK+
Sbjct: 196 NPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNN--TTIYVGNLDLNVSEEELKQN 253
Query: 304 FRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQA 363
F + GE+ V + PGK GF+ F R+SA +A+++ + + QV+ V +PQ
Sbjct: 254 FLQFGEIVSVKVHPGKA-----CGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQT 308
Query: 364 EKR 366
++
Sbjct: 309 ARQ 311
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 15/177 (8%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++++ G LP L L E G + ++ DRDTG ++G+AFV E+ I+
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 169 DIHNKEFKGKTLRCSLS-----------ETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVE 217
++ KEF G+TLR + S ET+++LF+GN+ TVT + +A G V
Sbjct: 173 NLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGT-VV 231
Query: 218 SIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNS 274
++ D + K+RG+ FV Y + D + M + +L G T V+ A K S
Sbjct: 232 GARVLFDGET-GKSRGYGFVSYATKSEMDTALAIM--DNVELEGRTLRVSLAQGKRS 285
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 7/177 (3%)
Query: 186 ETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACA 245
+T+ +L+ GN+P +V ++ G E IE++ D ++ K+RGFAFV
Sbjct: 110 DTRTKLYFGNLPYSVDSALLAGLIEEYGSA-ELIEVLYD-RDTGKSRGFAFVTMSCVEDC 167
Query: 246 DYSRQKMSSSSFKLYGNTPTVTWAD-PKNSPDHSASSQVKALYVKNIPENVTTDQLKELF 304
+ Q + F G T V ++D PK ++ K L+V N+ VT++ L + F
Sbjct: 168 NAVIQNLDGKEF--MGRTLRVNFSDKPKPKEPLYPETEYK-LFVGNLAWTVTSESLTQAF 224
Query: 305 RRHGEVTKV-VMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAK 360
+ HG V V+ G+ G R +GF+ +A +S A+ + E++G+ L V LA+
Sbjct: 225 QEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQ 281
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 128/280 (45%), Gaps = 30/280 (10%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
++IG L E L G+I V++++++ +G ++GY F F + A+K +++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 171 H-------NKEFKGKTLRCSLSE------TKHRLFIGNVPKTVTEDEFRKAVDGVGPGVE 217
++ F+ S + T +F+G++ VT+ + P V+
Sbjct: 159 AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVK 218
Query: 218 SIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKM-----SSSSFKLYGNTPTVTWADPK 272
+ +++ D N +++G+ FV + + + + +M SS ++ TP +
Sbjct: 219 AAKVVYD-ANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQP 277
Query: 273 NSPDHSASSQVKA------LYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDF 326
+ SSQ +A ++V + NVT + LK+ F ++GE+ V +P GK
Sbjct: 278 GGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGK-----GC 332
Query: 327 GFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
GF+ FA R++A +A+++ I Q + + + A K+
Sbjct: 333 GFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQ 372
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/295 (20%), Positives = 133/295 (45%), Gaps = 37/295 (12%)
Query: 103 ALPPHGS-----EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAF 157
A+PP S ++IG L E+ L G++ V++++++ T ++GY F+ F
Sbjct: 63 AVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEF 122
Query: 158 KTKEEAQKAIEDIHN-------KEFKGKTLRCSLSETKH------RLFIGNVPKTVTEDE 204
++ A++ ++ + + F+ S E +H +F+G++ V++
Sbjct: 123 ISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHH 182
Query: 205 FRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNA-------------CADYSRQK 251
+ V+ +++ D + + +G+ FV + + + C+ +
Sbjct: 183 LTEVFRTRYNSVKGAKVVID-RTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRI 241
Query: 252 MSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVT 311
+S+ L T ++ +P+ + ++V N+ NVT + LK++F ++GE+
Sbjct: 242 GPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELV 301
Query: 312 KVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
V +P GK GF+ FA+RSSA +A++ + GQ + + + A K+
Sbjct: 302 HVKIPSGK-----RCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQ 351
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 106/236 (44%), Gaps = 22/236 (9%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++G L D + L +L +G ++ VR+ +D + + GY +V F +A KA++
Sbjct: 24 TSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMD 83
Query: 169 DIHNKEFKGKTLRCSLSETKHR-----------LFIGNVPKTVTEDEFRKAVDGVGPGVE 217
++ K +R S HR +FI N+ + + G +
Sbjct: 84 VLNFTPLNNKPIRIMYS---HRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFG-NIL 139
Query: 218 SIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPT-VTWADPKNSPD 276
S ++ D SK G+ FV + N A + K++ L + P V K D
Sbjct: 140 SCKIAMDASGLSK--GYGFVQFENEESAQSAIDKLNG---MLLNDKPVYVGHFQRKQDRD 194
Query: 277 HSAS-SQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHF 331
++ S ++ +YVKN+ E+VT D LK F +G +T V+ G + FGF++F
Sbjct: 195 NALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNF 250
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 118/302 (39%), Gaps = 67/302 (22%)
Query: 108 GSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAI 167
+ +FI L R L + G+IL ++ D +G +KGY FV F+ +E AQ AI
Sbjct: 111 AANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAI 169
Query: 168 EDIHNKEFKGKTLRC-----------SLSETK-HRLFIGNVPKTVTEDEFRKAVDGVGPG 215
+ ++ K + +LS K + +++ N+ ++VT+D+ + G
Sbjct: 170 DKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDDLKNTFGEYGT- 228
Query: 216 VESIELIKDPQNPSKNRGFAFV----------------------LYYNNACADYSR---- 249
+ S +++D SK GF Y A Y R
Sbjct: 229 ITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELEL 288
Query: 250 -----QKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELF 304
Q M + K YG LY+KN+ ++VT ++L ELF
Sbjct: 289 KERHEQSMKETVDKFYGAN----------------------LYLKNLDDSVTDEKLSELF 326
Query: 305 RRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAE 364
G VT + G R GF+ F+ A +A+ E + G+ L V A+ + E
Sbjct: 327 SEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEE 386
Query: 365 KR 366
++
Sbjct: 387 RK 388
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 20/269 (7%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++G L + + L +L +G ++ VR+ +D T + GY +V F ++A +A++
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 169 DIHNKEFKGKTLRCSLSETKHR-----------LFIGNVPKTVTEDEFRKAVDGVGPGVE 217
++ K++R S HR +FI N+ KT+ G +
Sbjct: 92 VLNFTPMNNKSIRVMYS---HRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ-IM 147
Query: 218 SIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDH 277
S ++ D SK G+ FV + A + K++ + V K D+
Sbjct: 148 SCKIATDGSGQSK--GYGFVQFEAEDSAQNAIDKLNG--MLINDKQVFVGHFLRKQDRDN 203
Query: 278 SAS-SQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSS 336
S ++ +YVKN+ E+ T D LK F +G +T V+ G + FGF++F
Sbjct: 204 VLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAED 263
Query: 337 ALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
A KAV+ ++D + V A+ ++E+
Sbjct: 264 AAKAVEALNGKKVDDKEWYVGKAQKKSER 292
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 155/368 (42%), Gaps = 51/368 (13%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +FI L + L + G I+ ++ D +G +KGY FV F+ ++ AQ AI+
Sbjct: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAID 178
Query: 169 D-----IHNKE-FKGKTLRCS-----LSETK-HRLFIGNVPKTVTEDEFRKAVDGVGPGV 216
I++K+ F G LR LS+TK + +++ N+ ++ TED+ + G +
Sbjct: 179 KLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGT-I 237
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPD 276
S L++D SK F FV + N D ++ + + K+ V A K+ +
Sbjct: 238 TSAVLMRDADGRSK--CFGFVNFEN--AEDAAKAVEALNGKKVDDKEWYVGKAQKKSERE 293
Query: 277 HSASSQVKA--------------LYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGG 322
+ + LY+KN+ +++T ++LKE+F G +T + G
Sbjct: 294 QELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGV 353
Query: 323 KRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHLP 382
R GF+ F+ A +A+ E I + L V +A+ + ++R A + P +
Sbjct: 354 SRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQMRPVAIT 413
Query: 383 HAXXXXXXXXXXXXXXTGYGAAPAYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPG 442
+ P Q +YG+GP PA M+ P GY Q
Sbjct: 414 PSVAPRMPLYPP--------GTPGLGQQFMYGQGP-PA------MMPPQAGFGYQQQ--- 455
Query: 443 VQVPAARP 450
VP RP
Sbjct: 456 -LVPGMRP 462
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 19/273 (6%)
Query: 105 PPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQ 164
P + +++G L E L +L + ++ +R+ +D+ + GYA+V F ++A
Sbjct: 26 PFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAA 85
Query: 165 KAIEDIHNKEFKGKTLRCSLSET--------KHRLFIGNVPKTVTEDEFRKAVDGVGPGV 216
A E ++ K +R S+ +FI N+ ++ GP V
Sbjct: 86 NAKELLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP-V 144
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVT---WADPKN 273
S ++ D SK G+ FV + N A + +++ + N V + +
Sbjct: 145 LSCKVALDGNGQSK--GYGFVQFDNEEAAKSAIKQLDG----MLINDKQVYVGFFVRHQE 198
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAE 333
+ S + +YVKNI E T + LK+LF G +T + G R FGF++F
Sbjct: 199 RARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQS 258
Query: 334 RSSALKAVKETEKYEI-DGQVLEVVLAKPQAEK 365
SA AV++ I D +VL V A+ +AE+
Sbjct: 259 PDSAAAAVEKLNGTAINDDKVLFVGRAQRKAER 291
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 150/388 (38%), Gaps = 63/388 (16%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VFI L L + G +L ++ D + G +KGY FV F +E A+ AI+ +
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 171 HNKEFKGKTL------------RCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
K + R + S +++ N+ + T+++ ++ G + S
Sbjct: 179 DGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGM-ITS 237
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFK----LYGNTPTVTWADPKNS 274
++KD K+R F FV + + A + +K++ ++ L+ V A K
Sbjct: 238 ATVMKDAN--GKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLF-----VGRAQRKAE 290
Query: 275 PDHSASS-------------QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIG 321
++ + Q LY+KN+ ++ ++LK+LF G VT + G
Sbjct: 291 RENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHG 350
Query: 322 GKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHL 381
+ GF+ F+ A KA+ E + + L V +A+ + E++ A H
Sbjct: 351 HSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQA--------HF 402
Query: 382 PHAXXXXXXXXXXXXXXTGY--GAAPAYQQPMIYGRG------PMPAGMQMVPMVLPDGR 433
TGY GA Q + YG+G P PAG +LP R
Sbjct: 403 AQ-IRAPGGMAPLAAELTGYHPGAPRLAPQQLYYGQGTPGFIPPQPAGFGFQQQILPGMR 461
Query: 434 IG--------YVLQQPGVQVPAARPRRN 453
G Y LQ+ G RRN
Sbjct: 462 PGVAPNFVMPYQLQRQGQNGQRIGARRN 489
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 118/273 (43%), Gaps = 19/273 (6%)
Query: 105 PPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQ 164
P + +++G L E L +L + ++ +R+ +D+ + GYA+V F ++A
Sbjct: 26 PFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAA 85
Query: 165 KAIEDIHNKEFKGKTLRCSLSET--------KHRLFIGNVPKTVTEDEFRKAVDGVGPGV 216
A E ++ K +R S+ +FI N+ ++ GP V
Sbjct: 86 NAKELLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGP-V 144
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVT---WADPKN 273
S ++ D SK G+ FV + N A + +++ + N V + +
Sbjct: 145 LSCKVALDGNGQSK--GYGFVQFDNEEAAKSAIKQLDG----MLINDKQVYVGFFVRHQE 198
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAE 333
+ S + +YVKNI E T + LK+LF G +T + G R FGF++F
Sbjct: 199 RARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQS 258
Query: 334 RSSALKAVKETEKYEI-DGQVLEVVLAKPQAEK 365
SA AV++ I D +VL V A+ +AE+
Sbjct: 259 PDSAAAAVEKLNGTAINDDKVLFVGRAQRKAER 291
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 89/388 (22%), Positives = 150/388 (38%), Gaps = 63/388 (16%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VFI L L + G +L ++ D + G +KGY FV F +E A+ AI+ +
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGN-GQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 171 HNKEFKGKTL------------RCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
K + R + S +++ N+ + T+++ ++ G + S
Sbjct: 179 DGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGM-ITS 237
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFK----LYGNTPTVTWADPKNS 274
++KD K+R F FV + + A + +K++ ++ L+ V A K
Sbjct: 238 ATVMKDAN--GKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLF-----VGRAQRKAE 290
Query: 275 PDHSASS-------------QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIG 321
++ + Q LY+KN+ ++ ++LK+LF G VT + G
Sbjct: 291 RENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLDSHG 350
Query: 322 GKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHPNHL 381
+ GF+ F+ A KA+ E + + L V +A+ + E++ A H
Sbjct: 351 HSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRKEERKAQLQA--------HF 402
Query: 382 PHAXXXXXXXXXXXXXXTGY--GAAPAYQQPMIYGRG------PMPAGMQMVPMVLPDGR 433
TGY GA Q + YG+G P PAG +LP R
Sbjct: 403 AQ-IRAPGGMAPLAAELTGYHPGAPRLAPQQLYYGQGTPGFIPPQPAGFGFQQQILPGMR 461
Query: 434 IG--------YVLQQPGVQVPAARPRRN 453
G Y LQ+ G RRN
Sbjct: 462 PGVAPNFVMPYQLQRQGQNGQRIGARRN 489
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++FIGG+ E LRE GD+L+ +++ DRDTG ++G+ F+ F T EEA A++
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 169 DIHNKEFKGKTLRCSLSETKHR 190
+ NKE G+T+R + + + R
Sbjct: 100 AMDNKELDGRTVRVNYATERAR 121
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++FIGG+ E LRE GD+L+ +++ DRDTG ++G+ F+ F T EEA A++
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 169 DIHNKEFKGKTLRCSLSETKHR 190
+ NKE G+T+R + + + R
Sbjct: 100 AMDNKELDGRTVRVNYATERAR 121
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 31/280 (11%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE-- 168
VF+ L L ++ + G+IL +++ D G +KGY FV F+T+E A AIE
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSED-GKSKGYGFVQFETEESANAAIERL 158
Query: 169 --------DIHNKEFKGKTLRCSLS-ETKH-RLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
I+ +F K+ R S +T++ L++ N+ ++E R+ G + S
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGK-IIS 217
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHS 278
+ + KD SK GF FV + N A + + M+ +L V A K +
Sbjct: 218 LAVAKDSNGMSK--GFGFVNFDNPEDAKRAMETMNG--LQLGSKILYVARAQKKAEREQI 273
Query: 279 ASSQVKA-------------LYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
Q + +YVKNI +NV+ + L++ F G +T + G +
Sbjct: 274 LHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKG 333
Query: 326 FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
FGF+ F+ A KAV + G+ L V LA+ + ++
Sbjct: 334 FGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKEDR 373
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 126/280 (45%), Gaps = 26/280 (9%)
Query: 102 LALPPHGS--EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKT 159
+A+PP + +++G L D + L + + VR+ +D +G + Y +V F +
Sbjct: 1 MAVPPSATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLS 60
Query: 160 KEEAQKAIEDIHNKEFKGKTLRCSLS--------ETKHRLFIGNVPKTV----TEDEFRK 207
+A +AIE ++ GK +R S +F+ N+ +++ ED F+K
Sbjct: 61 PHDAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKK 120
Query: 208 AVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVT 267
+ + V E K++G+ FV + A+ + ++++ L G+
Sbjct: 121 FGNILSSKVVMSE-------DGKSKGYGFVQFETEESANAAIERLNG---YLVGDKQIYV 170
Query: 268 WADPKNSPDHSAS--SQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRD 325
K S S+ ++ LY+KN+ +++ L+E F G++ + + G +
Sbjct: 171 GKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKG 230
Query: 326 FGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
FGF++F A +A++ ++ ++L V A+ +AE+
Sbjct: 231 FGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAER 270
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 81 EEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRL 140
++ E+ ++ + ++K E + L GS +++ + + ++ LR+ G I ++
Sbjct: 265 QKKAEREQILHQQFEEKRKEQV-LKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKI 323
Query: 141 MKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSETK 188
M+D D G +KG+ FV F T EEA KA+ H F GK L SL++ K
Sbjct: 324 MRD-DKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRK 370
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/346 (20%), Positives = 143/346 (41%), Gaps = 51/346 (14%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
++IG L E+ L G++ V++++++ T ++GY F+ F T+ A++ ++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 171 H---------NKEFKGKTLRCSLSETK------HRLFIGNVPKTVTEDEFRKAVDGVGPG 215
+ N T ++ H +F+G++ VT+ ++
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNS 181
Query: 216 VESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSP 275
V+ +++ D + +++G+ FV + AD Q + + + + P +
Sbjct: 182 VKGAKVVID-RLTGRSKGYGFVRF-----ADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
Query: 276 DHSASSQVKA-----------------LYVKNIPENVTTDQLKELFRRHGEVTKVVMPPG 318
+ +A++Q KA ++V N+ NVT D L+++F ++GE+ V +P G
Sbjct: 236 NPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSG 295
Query: 319 KIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRPDAYAFNPGVHP 378
K GF+ F++RS A +A++ + GQ + + + + K+ P
Sbjct: 296 K-----RCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQ-------DP 343
Query: 379 NHLPHAXXXXXXXXXXXXXXT-GYGAAPAYQQPMIYGRGPMPAGMQ 423
+ GY A PA Q P +YG P G Q
Sbjct: 344 TQGGYPAAGGYYGYAQGGYENYGYAAPPAGQDPNVYGSYPGYPGYQ 389
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 28/154 (18%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D ED LR+ + GD++E +MKDR TG +G+ FV F A++ + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 170 IHNKEFKGKTLRCS-------------LSETKH-----------RLFIGNVPKTVTEDEF 205
H G+T+ + + H ++F+G + TVTE +F
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
+ D G + + ++ D N + RGF F+ Y
Sbjct: 123 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 28/154 (18%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D ED LR+ + GD++E +MKDR TG +G+ FV F A++ + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 170 IHNKEFKGKTLRCS-------------LSETKH-----------RLFIGNVPKTVTEDEF 205
H G+T+ + + H ++F+G + TVTE +F
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
+ D G + + ++ D N + RGF F+ Y
Sbjct: 123 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 28/154 (18%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D ED LR+ + GD++E +MKDR TG +G+ FV F A++ + +
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 170 IHNKEFKGKTLRCS-------------LSETKH-----------RLFIGNVPKTVTEDEF 205
H G+T+ + + H ++F+G + TVTE +F
Sbjct: 65 KH--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDF 122
Query: 206 RKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
+ D G + + ++ D N + RGF F+ Y
Sbjct: 123 KNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 22/175 (12%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +P+ ED+L L + + EV ++KD+ T ++G FV +++EA KA+
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 170 IHNKE--------FKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
HNK+ + K L +H+LFIG +PK ++E E G ++ +++
Sbjct: 77 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYG-TIKDLQI 135
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYS------RQKMSSSSFKLYGNTPTVTWAD 270
++ Q SK G AF+ Y A + + KM SS L V WAD
Sbjct: 136 LRGSQQTSK--GCAFLKYETKEQALAALEAINGKHKMEGSSVPL-----VVKWAD 183
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 65/315 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++ + G+P D + L+E G++ + +MK+R TG ++G+ +V F + ++A++ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 170 IHNKEFKGKTLRCSLSETKH----------RLFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
H + L ++ K R+F+ +P +VTE+ FR + G + +
Sbjct: 65 EHV--LGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGD-ITDL 121
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPK------- 272
+ KD Q +RG F+ + N S + + S + +L G+ V A PK
Sbjct: 122 YMPKD-QGSKMHRGIGFITFGNAE----SVENLMSETHELGGSAVVVDRATPKEDDVKPT 176
Query: 273 ------------NSPDHSASSQV-------------------------KALYVKNIPENV 295
N+ +A+ K ++V +P
Sbjct: 177 GRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEA 236
Query: 296 TTDQLKELFRRHGEVTKVVMPPG-KIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVL 354
++ L++ F R G + V +P K G R FGF+ FA+ A + +EI G +
Sbjct: 237 NSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRV--SLRPHEICGHEV 294
Query: 355 EVVLAKPQAEKRPDA 369
+ A P + RP
Sbjct: 295 AIDSATPVDDARPSG 309
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 65/315 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++ + G+P D + L+E G++ + +MK+R TG ++G+ +V F + ++A++ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 170 IHNKEFKGKTLRCSLSETKH----------RLFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
H + L ++ K R+F+ +P +VTE+ FR + G + +
Sbjct: 65 EHV--LGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGD-ITDL 121
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPK------- 272
+ KD Q +RG F+ + N S + + S + +L G+ V A PK
Sbjct: 122 YMPKD-QGSKMHRGIGFITFGNAE----SVENLMSETHELGGSAVVVDRATPKEDDVKPT 176
Query: 273 ------------NSPDHSASSQV-------------------------KALYVKNIPENV 295
N+ +A+ K ++V +P
Sbjct: 177 GRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEA 236
Query: 296 TTDQLKELFRRHGEVTKVVMPPG-KIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVL 354
++ L++ F R G + V +P K G R FGF+ FA+ A + +EI G +
Sbjct: 237 NSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRV--SLRPHEICGHEV 294
Query: 355 EVVLAKPQAEKRPDA 369
+ A P + RP
Sbjct: 295 AIDSATPVDDARPSG 309
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 65/315 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++ + G+P D + L+E G++ + +MK+R TG ++G+ +V F + ++A++ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 170 IHNKEFKGKTLRCSLSETKH----------RLFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
H + L ++ K R+F+ +P +VTE+ FR + G + +
Sbjct: 65 EHV--LGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGD-ITDL 121
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPK------- 272
+ KD Q +RG F+ + N S + + S + +L G+ V A PK
Sbjct: 122 YMPKD-QGSKMHRGIGFITFGNAE----SVENLMSETHELGGSAVVVDRATPKEDDVKPT 176
Query: 273 ------------NSPDHSASSQV-------------------------KALYVKNIPENV 295
N+ +A+ K ++V +P
Sbjct: 177 GRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEA 236
Query: 296 TTDQLKELFRRHGEVTKVVMPPG-KIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVL 354
++ L++ F R G + V +P K G R FGF+ FA+ A + +EI G +
Sbjct: 237 NSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRV--SLRPHEICGHEV 294
Query: 355 EVVLAKPQAEKRPDA 369
+ A P + RP
Sbjct: 295 AIDSATPVDDARPSG 309
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 22/175 (12%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +P+ ED+L L + + EV ++KD+ T ++G FV +++EA KA+
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 170 IHNKE--------FKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
HNK+ + K L +H+LFIG +PK ++E E G ++ +++
Sbjct: 77 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYG-TIKDLQI 135
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYS------RQKMSSSSFKLYGNTPTVTWAD 270
++ Q SK G AF+ Y A + + KM SS L V WAD
Sbjct: 136 LRGSQQTSK--GCAFLKYETKEQALAALEAINGKHKMEGSSVPL-----VVKWAD 183
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P G+ +FI +P++ + +L +P G +L ++ D+ TG +K + FV++ + E AQ
Sbjct: 345 PPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQS 404
Query: 166 AIEDIHNKEFKGKTLR 181
AI ++ + GK L+
Sbjct: 405 AISMMNGCQLGGKKLK 420
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 65/315 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++ + G+P D + L+E G++ + +MK+R TG ++G+ +V F + ++A++ +
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64
Query: 170 IHNKEFKGKTLRCSLSETKH----------RLFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
H + L ++ K R+F+ +P +VTE+ FR + G + +
Sbjct: 65 EHV--LGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGD-ITDL 121
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPK------- 272
+ KD Q +RG F+ + N S + + S + +L G+ V A PK
Sbjct: 122 YMPKD-QGSKMHRGIGFITFGNAE----SVENLMSETHELGGSAVVVDRATPKEDDVKPT 176
Query: 273 ------------NSPDHSASSQV-------------------------KALYVKNIPENV 295
N+ +A+ K ++V +P
Sbjct: 177 GRMSQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEA 236
Query: 296 TTDQLKELFRRHGEVTKVVMPPG-KIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVL 354
++ L++ F R G + V +P K G R FGF+ FA+ A + +EI G +
Sbjct: 237 NSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFADEGVADRV--SLRPHEICGHEV 294
Query: 355 EVVLAKPQAEKRPDA 369
+ A P + RP
Sbjct: 295 AIDSATPVDDARPSG 309
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 91 DEDEKQKHDELLALPPHGS---EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTG 147
+ + +Q+H +L G+ ++FIGGL R+ + G+I + +MKDR TG
Sbjct: 24 EHEHEQQHHNSQSLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTG 83
Query: 148 DNKGYAFVAFKTKEEAQKAIEDIH-----NKEFKGKTLRCSLSETKHR---LFIGNVPKT 199
+G+ F+ + K IED H E K R ++ R +F+G +P
Sbjct: 84 QPRGFGFITYADPSVVDKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSN 143
Query: 200 VTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACAD 246
VTEDEFR G V+ ++++D + +++RGF FV + D
Sbjct: 144 VTEDEFRDFFTRYGE-VKDHQIMRD-HSTNRSRGFGFVTFDTEEAVD 188
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
++FIG + + T +F K G +S+ ++KD + + RGF F+ Y + + D
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKD-RKTGQPRGFGFITYADPSVVD--- 100
Query: 250 QKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGE 309
K+ S + + P+ + S + K ++V IP NVT D+ ++ F R+GE
Sbjct: 101 -KVIEDSHIINSKQVEIKRTIPRGAVG-SKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGE 158
Query: 310 VT-KVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKRP 367
V +M R FGF+ F + + K E G +E+ A+P+ P
Sbjct: 159 VKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKANAP 217
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+GG+P + ED+ R+ G++ + ++M+D T ++G+ FV F T+E +
Sbjct: 134 KIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSM 193
Query: 170 IHNKEFKGKTLRCSLSETK 188
+ EF G + +E K
Sbjct: 194 GNKIEFAGTQVEIKKAEPK 212
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+G +P+ ED+L L + + EV ++KD+ T ++G FV +++EA KA+
Sbjct: 17 KLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 76
Query: 170 IHNKE--------FKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
HNK+ + K L +H+LFIG +PK ++E E G ++ +++
Sbjct: 77 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYG-TIKDLQI 135
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYS------RQKMSSSSFKLYGNTPTVTWAD 270
++ Q SK G AF+ Y A + + KM SS L V WAD
Sbjct: 136 LRGSQQTSK-VGCAFLKYETKEQALAALEAINGKHKMEGSSVPL-----VVKWAD 184
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P G+ +FI +P++ + +L +P G +L ++ D+ TG +K + FV++ + E AQ
Sbjct: 346 PPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQS 405
Query: 166 AIEDIHNKEFKGKTLR 181
AI ++ + GK L+
Sbjct: 406 AISMMNGCQLGGKKLK 421
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 129/291 (44%), Gaps = 37/291 (12%)
Query: 107 HGSE------VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTK 160
HGS +++G L E+ L G+I +++++++ T +GY FV F +
Sbjct: 85 HGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSH 144
Query: 161 EEAQKAIED-----IHNKEFKGKTLRCSLSETKHR---------LFIGNVPKTVTEDEFR 206
A+K ++ + N E + + S H+ +F+G++ VT+
Sbjct: 145 GTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLL 204
Query: 207 KAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKM-----SSSSFKLYG 261
+ P V++ +++ D N +++G+ FV + ++ + +M SS + ++
Sbjct: 205 ETFSDKYPSVKAAKVVFD-ANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGA 263
Query: 262 NTPTVTWADPKNSPDHSASSQV------KALYVKNIPENVTTDQLKELFRRHGEVTKVVM 315
TP + + + SQ ++V + + T + L++ F ++GE+ V +
Sbjct: 264 ATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKI 323
Query: 316 PPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
P GK GF+ FA R++A +A+++ + Q + + + A K+
Sbjct: 324 PVGK-----GCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQ 369
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 121/272 (44%), Gaps = 26/272 (9%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++G L D + L + ++ R+ KD TG + Y +V + +EA +AIE
Sbjct: 15 ATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIE 74
Query: 169 DIHNKEFKGKTLRC--------SLSETKHRLFIGNVPKTV----TEDEFRKAVDGVGPGV 216
++ GK +R + K +F+ N+ ++ D F+K + + +
Sbjct: 75 LKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKI 134
Query: 217 ESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFK---LYGNTPTVTWADPKN 273
E K++GF ++ + + A+ + QKM+ S+ + +Y ++
Sbjct: 135 ARSE-------DGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIY--VGKFIRKSERS 185
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAE 333
PD A + LYVKN+ VT L E F G++ + + + G + FGF+++
Sbjct: 186 LPDLDA--KFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDS 243
Query: 334 RSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
A +A++ + + ++L V A+ + E+
Sbjct: 244 PDDARRAMEAMDGSQFGSKILYVARAQKKVER 275
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 41/284 (14%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VF+ L L +L + G+IL ++ + D G +KG+ ++ F ++E A AI+ +
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARSED-GKSKGFGYIQFDSEESANVAIQKM 163
Query: 171 HNKEFK------GKTLRCS------LSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVES 218
+ + GK +R S L L++ N+ VTE + G + S
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGK-IVS 222
Query: 219 IELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFK---LYGNTPTVTWADPK--- 272
+ + KD SK GF FV Y + A + + M S F LY V A K
Sbjct: 223 LAIKKDENGQSK--GFGFVNYDSPDDARRAMEAMDGSQFGSKILY-----VARAQKKVER 275
Query: 273 ----------NSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGG 322
H S+ +YVKNI +V ++L++ F GEV + G
Sbjct: 276 EQILHHLFVEKGLKHMGSN----IYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDKGT 331
Query: 323 KRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
+ FGF+ F+ A K++ G+ L V A+ + +++
Sbjct: 332 SKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKKEDRK 375
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ LRE G++ E +MKDR TG +G+ FV F A +++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 170 IHNKEFKGKTLRCS----------LSETK------------HRLFIGNVPKTVTEDEFRK 207
HN + G+ + LS T ++F+G + TVTE +F+K
Sbjct: 67 KHNID--GRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
Query: 208 AVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
D G + + ++ D N + RGF F+ Y
Sbjct: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ LRE G++ E +MKDR TG +G+ FV F A +++
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 170 IHNKEFKGKTLRCS----------LSETK------------HRLFIGNVPKTVTEDEFRK 207
HN + G+ + LS T ++F+G + TVTE +F+K
Sbjct: 67 KHNID--GRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
Query: 208 AVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
D G + + ++ D N + RGF F+ Y
Sbjct: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VF+G +P DA E+ L+E+C +G ++ RL+ DR+TG KGY F + +E A A ++
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 171 HNKEFKGKTLRCSLSE 186
E G+ LR +E
Sbjct: 91 QGYEINGRQLRVDFAE 106
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 281 SQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGK-RDFGFIHFAERSSALK 339
SQ + ++V NIP + T +QLKE+ R G V + + GK + +GF + + +AL
Sbjct: 26 SQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALS 85
Query: 340 AVKETEKYEIDGQVLEVVLAK 360
A + + YEI+G+ L V A+
Sbjct: 86 ARRNLQGYEINGRQLRVDFAE 106
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 80/145 (55%), Gaps = 10/145 (6%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGGL +D ++ + E G+I + +MKDR TG +G+ F+ + + I++
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 170 ---IHNKEFKGK-TLRCSLSETK----HRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
I++K+ + K T+ S+T ++F+G +P TV+EDE + G VE E+
Sbjct: 79 NHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEH-EI 137
Query: 222 IKDPQNPSKNRGFAFVLYYNNACAD 246
I+D ++RGF FV++ ++ D
Sbjct: 138 IRD-HTTKRSRGFGFVVFDSDKAVD 161
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 8/174 (4%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
++FIG + K T +EF K + G +S+ ++KD ++ + RGF F+ Y + + D
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSV-IMKD-RHTGRPRGFGFITYADASVVDQVI 76
Query: 250 QKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGE 309
Q+ + K T+ PK + + + K ++V IP V+ D+LK F +HG
Sbjct: 77 QENHIINDKQVEIKRTI----PKGAS-QTNDFKTKKIFVGGIPATVSEDELKIFFSKHGN 131
Query: 310 VTK-VVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQ 362
V + ++ R FGF+ F + + + ++D +E+ A+P+
Sbjct: 132 VVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPK 185
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 28/153 (18%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ L+E G+++E +M+DR TG +G+ FV F A++ I D
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 170 IHNKEFKGKTLRCSLS-----------------------ETKHRLFIGNVPKTVTEDEFR 206
H G+T+ + TK ++F+G +P T+TE +F+
Sbjct: 67 KH--IIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTK-KIFVGGLPSTITESDFK 123
Query: 207 KAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
D G + + ++ D N + RGF F+ Y
Sbjct: 124 MYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 28/153 (18%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ L+E G+++E +M+DR TG +G+ FV F A++ I D
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 170 IHNKEFKGKTLRCSLS-----------------------ETKHRLFIGNVPKTVTEDEFR 206
H G+T+ + TK ++F+G +P T+TE +F+
Sbjct: 67 KH--IIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTK-KIFVGGLPSTITESDFK 123
Query: 207 KAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
D G + + ++ D N + RGF F+ Y
Sbjct: 124 MYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITY 154
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 10/173 (5%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ ++G L E+ L EL G ++ V + KDR T ++GY FV F+++E+A AI+
Sbjct: 25 ATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
Query: 169 DIHNKEFKGKTLRCSLSETKHR-------LFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
++ + GK +R + + + LFIGN+ V E G V + ++
Sbjct: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 222 IKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNS 274
++DP +RGF F+ Y + +D + + M+ L TV++A K++
Sbjct: 145 MRDPDT-GNSRGFGFISYDSFEASDSAIEAMNGQ--YLCNRQITVSYAYKKDT 194
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + D++R E GDILE ++ D++TG +KGY FV F+ E A++A
Sbjct: 16 TKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACA 75
Query: 169 DIHNKEFKGKTLRCSLSE 186
D N G+ C+++
Sbjct: 76 D-PNPVIDGRRANCNIAS 92
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 32/158 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ L+E GD+L +M++++TG +G+ FV F + +ED
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLED 66
Query: 170 IHNKEFKGKTLRCSLSETKH----------------------------RLFIGNVPKTVT 201
H G+T+ + ++ ++F+G +P T+
Sbjct: 67 KH--VIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLA 124
Query: 202 EDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
E++FR+ + G V + ++ D QN + RGF F+ +
Sbjct: 125 EEKFRQYFEAYGH-VTDVVVMYD-QNTGRPRGFGFITF 160
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 32/158 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FIGG+ D E+ L+E GD+L +M++++TG +G+ FV F + +ED
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLED 66
Query: 170 IHNKEFKGKTLRCSLSETKH----------------------------RLFIGNVPKTVT 201
H G+T+ + ++ ++F+G +P T+
Sbjct: 67 KH--VIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLA 124
Query: 202 EDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
E++FR+ + G V + ++ D QN + RGF F+ +
Sbjct: 125 EEKFRQYFEAYGH-VTDVVVMYD-QNTGRPRGFGFITF 160
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 65.1 bits (157), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++++GG+ + LRE GD+L+ R++ DR+ G +KG+ FV F T EEA A++
Sbjct: 40 AKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQ 99
Query: 169 DIHNKEFKGKTLRCSLSETKHR 190
+ N+E G+T+R + ++ + R
Sbjct: 100 AMDNQELHGRTVRVNYAQERPR 121
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 77/153 (50%), Gaps = 21/153 (13%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P ++++G +PR D+L ++ + G + + +M D+ + ++ +AFV KT E+A
Sbjct: 57 PALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANA 116
Query: 166 AIEDIHNKEFKGKTLRCSLSE-------------------TKHRLFIGNVPKTVTEDEFR 206
A E ++ E G+ ++ +++E + +++++GN+ K VT D +
Sbjct: 117 AAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLK 176
Query: 207 KAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
K G + S ++ + P SK+ GF FV +
Sbjct: 177 KFFSEKGNAL-SAKVSRAP-GTSKSSGFGFVTF 207
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 11/175 (6%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
+L++GN+P+TV+ DE K V G VE E++ D + ++R FAFV A+ +
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHG-AVEKAEVMYDKYSK-RSRRFAFVTMKTVEDANAAA 118
Query: 250 QKMSSSSF---KLYGNT---PTVTWADPKNSPDHSASSQVKALYVKNIPENVTTDQLKEL 303
+K++ + ++ N P T P + + + +YV N+ +NVT+D LK+
Sbjct: 119 EKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKF 178
Query: 304 FRRHGEV--TKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEV 356
F G KV PG FGF+ F+ A+ ++GQ + V
Sbjct: 179 FSEKGNALSAKVSRAPG-TSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRV 232
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + +D LRE E GDILE ++ D+ TG +KGY FV FK + A+KA E
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
Query: 169 DIHNKEFKGKTLRCSLSETKHR 190
+ G+ C+++ R
Sbjct: 78 EP-TVIINGRRANCNIASLGAR 98
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + +D LRE E GDILE ++ D+ TG +KGY FV FK + A+KA E
Sbjct: 18 TKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACE 77
Query: 169 DIHNKEFKGKTLRCSLSETKHR 190
+ G+ C+++ R
Sbjct: 78 EP-TVIINGRRANCNIASLGAR 98
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++FIGG+ E+ LRE G++L+ R++ DR+TG ++G+ F+ F + EEA AI+
Sbjct: 42 TKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQ 101
Query: 169 DIHNKEFKGKTLRCSLSETKHRL 191
+ ++ G+ +R + + + R+
Sbjct: 102 ALDGQDLHGRRVRVNYANERPRV 124
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 105 PPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQ 164
P ++F+G LP D + L +L E G + ++ +RDT ++G+ FV T EE +
Sbjct: 118 PSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVE 177
Query: 165 KAIEDIHNKEFKGKTLRCSLS--------------ETKHRLFIGNVPKTVTEDEFRKAVD 210
+A+ E G+ L + + + R ++GN+P V +
Sbjct: 178 RAVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFS 237
Query: 211 GVGPGVESIELIKDPQNPSKNRGFAFVLYYNNA 243
G VES +++ D + ++RGF FV N A
Sbjct: 238 EHGK-VESAQVVYDRET-GRSRGFGFVTMSNEA 268
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 14/183 (7%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
++F+GN+P V ++ + + G VE E+I + ++ ++RGF FV + + +
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGT-VEIAEVIYN-RDTDRSRGFGFVTMSTSEEVERAV 180
Query: 250 QKMSSSSFKLYGNTPTVTWADPKNSPD----HSASSQVKALYVKNIPENVTTDQLKELFR 305
K S F+L G TV A P+ +P + +S ++A YV N+P +V L++LF
Sbjct: 181 NKFSG--FELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRA-YVGNLPWDVDNSSLEQLFS 237
Query: 306 RHGEVTKV-VMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAE 364
HG+V V+ + G R FGF+ + + A+ + +G+ + V + AE
Sbjct: 238 EHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNV----AE 293
Query: 365 KRP 367
+RP
Sbjct: 294 ERP 296
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 108 GSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAI 167
G ++G LP D L +L G + +++ DR+TG ++G+ FV + E AI
Sbjct: 215 GLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAI 274
Query: 168 EDIHNKEFKGKTLRCSLSETKHR 190
+ + F G+ +R +++E + R
Sbjct: 275 AALDGQSFNGRAIRVNVAEERPR 297
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + + +R E GDILE ++ D++TG +KGY FV F+ E A++A
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
Query: 169 DIHNKEFKGKTLRCSLSE 186
D + G+ C+L+
Sbjct: 89 D-PSPVIDGRRANCNLAS 105
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + + +R E GDILE ++ D++TG +KGY FV F+ E A++A
Sbjct: 29 TKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACA 88
Query: 169 DIHNKEFKGKTLRCSLSE 186
D + G+ C+L+
Sbjct: 89 D-PSPVIDGRRANCNLAS 105
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 79 FVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEV 138
+ + E P + KQ ++ + +++G LP L ++ G ++ V
Sbjct: 79 IISQQQEPEPETSDKPKQDEEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSV 138
Query: 139 RLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSE------------ 186
++ DR T ++G+AFV K+ EEA++AI + G++ + + E
Sbjct: 139 EIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRSAKVNFPEVPKGGERLVMGQ 198
Query: 187 -----------TKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFA 235
+ H+++ GN+ + + R A D PG+ ++I + N ++RGF
Sbjct: 199 KVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDE-QPGLLGAKIIYERDN-GRSRGFG 256
Query: 236 FVLY 239
FV +
Sbjct: 257 FVTF 260
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++FI GL R ++ L E P G +LE +++ DR +G +KG+AFV++ T EEA+KA E
Sbjct: 36 KLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREG 95
Query: 170 IHNKEFKG 177
++ K G
Sbjct: 96 MNAKFLDG 103
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/299 (18%), Positives = 126/299 (42%), Gaps = 50/299 (16%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+++G L E L G++ ++++++ TG ++GY FV F T+ A+K +++
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 171 H-------NKEFK-----------GKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGV 212
+ ++ F+ G R S + + +F+G++ VT+ ++
Sbjct: 178 NGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETFASK 237
Query: 213 GPGVESIELIKDPQNPSKNRGFAFVLY-----YNNACADYSRQKMSSSSFKLYGNTPTVT 267
++ +++ D N +++G+ FV + A + + SS ++ TP T
Sbjct: 238 FSSIKGAKVVIDS-NTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKT 296
Query: 268 WADPKNSPD----------HSASSQVKA-----------LYVKNIPENVTTDQLKELFRR 306
+ +P+ HS + + ++V + +++ + L++ F +
Sbjct: 297 YGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQ 356
Query: 307 HGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEK 365
G+V V +P GK GF+ A+R +A +A++ I Q + + + K
Sbjct: 357 FGDVISVKIPVGK-----GCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNK 410
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 52/214 (24%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
+F+G L + + L + R+M D+ TG ++G+ FV+F+ ++EAQ AI D
Sbjct: 132 HIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAIND 191
Query: 170 IHNKEFKGKTLRCSL-------------SETKH--------------------------- 189
+ K + +RC+ SE+K
Sbjct: 192 LTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQY 251
Query: 190 -RLFIGNVPKTVTEDEFRKAVDGVGPG-VESIELIKDPQNPSKNRGFAFVLYYNNACADY 247
+++GN+ VT + +G G +E + + +D +GF FV Y + A
Sbjct: 252 TTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRD-------KGFGFVRYSTHGEAAL 304
Query: 248 SRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASS 281
+ Q M ++ F L+G +W K +P +AS+
Sbjct: 305 AIQ-MGNTRF-LFGKPIKCSWGS-KPTPPGTAST 335
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GGL + D L+ + GDILE ++ DR TG +KGY FV FK A A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 169 DIHNKEFKGKTLRCSLSETK 188
+ N G+ C+L+ K
Sbjct: 86 N-PNPMIDGRRANCNLAYQK 104
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GGL + D L+ + GDILE ++ DR TG +KGY FV FK A A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 169 DIHNKEFKGKTLRCSLSETK 188
+ N G+ C+L+ K
Sbjct: 86 N-PNPMIDGRRANCNLAYQK 104
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S++FIGGL + + LR+ GD++E R++ DR+TG ++G+ FV F ++E A A+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 169 DIHNKEFKGKTLRCSLSETKH 189
+ ++ G+ +R S + +
Sbjct: 96 -MDGQDLNGRNIRVSYANDRQ 115
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GG+ + E L + G +L+ R++ DR++G +KG+ FV + T EEA AI+
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 169 DIHNKEFKGKTLRCSLSETKHR 190
+ ++ G+ + + + + R
Sbjct: 104 ALDGQDLYGRRVGVNFANERPR 125
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GG+ + E L + G +L+ R++ DR++G +KG+ FV + T EEA AI+
Sbjct: 44 TKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQ 103
Query: 169 DIHNKEFKGKTLRCSLSETKHR 190
+ ++ G+ + + + + R
Sbjct: 104 ALDGQDLYGRRVGVNFANERPR 125
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 50/81 (61%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P +++FI GLP E L ++ G++ +V+L+ D+ TG + G+A++ F ++ AQ
Sbjct: 68 PSSTKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQS 127
Query: 166 AIEDIHNKEFKGKTLRCSLSE 186
A ++++ K F G+ + ++++
Sbjct: 128 AAKEMNGKLFYGRFIYVTIAK 148
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 122/282 (43%), Gaps = 29/282 (10%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ VF+ L L + G +L ++ D + G + GY FV + E A+ AIE
Sbjct: 15 ANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSN-GKSLGYGFVQYDNHESAKCAIE 73
Query: 169 DI------HNKEFKGKTLRC-----SLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVE 217
+ K F G +R + S +++ N+ +T T+++ +K G +
Sbjct: 74 KLDGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGV-IT 132
Query: 218 SIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDH 277
S ++KD SK F FV + + A + +K++ ++ G V A K +
Sbjct: 133 SAVIMKDENGNSK--CFGFVNFQSPDSAAAAVEKLNGTTTN-DGKVLYVGRAQRKCEREA 189
Query: 278 SASSQVKA-------------LYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKR 324
++ + LY+KN+ E++ ++LKE+F G +T + G +
Sbjct: 190 ELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAHGHSK 249
Query: 325 DFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQAEKR 366
FGF+ F+ A KA+ I + L VV+A+ + +++
Sbjct: 250 GFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVAQRKEDRK 291
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 230 KNRGFAFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASSQVKALYVK 289
K+ G+ FV Y N+ A + +K+ K V + + + S + +YVK
Sbjct: 53 KSLGYGFVQYDNHESAKCAIEKLDGMLIK--DKKAFVGYFIRRQERSENGSPKFTNVYVK 110
Query: 290 NIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEI 349
N+ E T + LK+LF +G +T V+ + G + FGF++F SA AV++
Sbjct: 111 NLLETDTDEDLKKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTT 170
Query: 350 -DGQVLEVVLAKPQAEKRPDAYA 371
DG+VL V A+ + E+ + A
Sbjct: 171 NDGKVLYVGRAQRKCEREAELRA 193
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 17/144 (11%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++V++GG+P + EDD+ E G I E+ M DTG +G A ++FKT+ A++A+
Sbjct: 220 TKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALA 279
Query: 169 DIHNKEFKGKTLR---CS----------LSETKHRLFIGNVPKTVTEDEFRKAVDGVGPG 215
+ + G L+ C + E +R+++G++ +TE+E RK
Sbjct: 280 -LDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNC--N 336
Query: 216 VESIELIKDPQNPSKNRGFAFVLY 239
V++I L D + + RG+A V +
Sbjct: 337 VKAIRLGMDKET-GEFRGYAHVDF 359
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 89 LIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGD 148
L++ D Q+ + +F+G LP L +L G+++ V ++ D T
Sbjct: 93 LLNSDLNQEAES-----TQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNR 147
Query: 149 NKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSE-------------------TKH 189
++G+AFV E+A++AI G+ ++ + E + H
Sbjct: 148 SRGFAFVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH 207
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
+++ GN+ +T RKA PG+ S +++ + +N K+RG+ FV +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAF-AKQPGLLSAKVVYE-RNNGKSRGYGFVSF 255
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 89 LIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGD 148
L++ D Q+ + +F+G LP L +L G+++ V ++ D T
Sbjct: 93 LLNSDLNQEAES-----TQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNR 147
Query: 149 NKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSE-------------------TKH 189
++G+AFV E+A++AI G+ ++ + E + H
Sbjct: 148 SRGFAFVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH 207
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY 239
+++ GN+ +T RKA PG+ S +++ + +N K+RG+ FV +
Sbjct: 208 KIYAGNLGWDMTSQYLRKAF-AKQPGLLSAKVVYE-RNNGKSRGYGFVSF 255
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GGL + D L+ + GDILE ++ DR TG +KGY FV FK A A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 169 DIHNKEFKGKTLRCSLSETK 188
+ N G+ C+L+ K
Sbjct: 86 N-PNPMIDGRRANCNLAYQK 104
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GGL + D L+ + GDILE ++ DR TG +KGY FV FK A A +
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQ 85
Query: 169 DIHNKEFKGKTLRCSLSETK 188
+ N G+ C+L+ K
Sbjct: 86 N-PNPMIDGRRANCNLAYQK 104
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 52/99 (52%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GGL E L++ GD+ EVR++ D+D+G +G+ FV F ++ A+ A +
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 169 DIHNKEFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRK 207
+ K G+ LR + + K R VP+ F K
Sbjct: 96 AMDGKALLGRPLRINFALEKPRGIPVVVPRFTDNGHFNK 134
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 19/227 (8%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ LP E++L E G + +V L+ D+DT +KG AF+ F E A +A+E+
Sbjct: 901 LFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEES 960
Query: 171 HNKEFKGKTLRCSLSETKHRLFIGNV---PKTVTED--EFRKAVDGVGPGVESIELIKDP 225
N F+G+ L + H N KT+ + E RKA + G L P
Sbjct: 961 DNSIFQGRLLHVIAAIPIHSNNEENKNQGSKTLKQRRVEERKAAEAKGDTRAWNSLFMRP 1020
Query: 226 ----QNPSKNRGFAFVLYYNNACADY-SRQKMSSS--------SFKLYGNTPTVTWADPK 272
+N S+ G + + + D SR ++ + +FK G + +
Sbjct: 1021 DTIAENASRKYGVSKSDFLDPEADDLASRHSLAQTQVIFETKNAFKKAG-VNVESLEELV 1079
Query: 273 NSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGK 319
N L KN+P T ++L ++F + G + K+++P K
Sbjct: 1080 NCKVDGVKRSNHVLLAKNLPYGATENELAKMFGKFGSLDKIILPSTK 1126
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 109 SEVFIGGLPRDAC--------EDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTK 160
+++FIGG+ + E+ LRE G++L+ R++ DR+TG ++G+ F+ F +
Sbjct: 42 TKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSV 101
Query: 161 EEAQKAIEDIHNKEFKGKTLRCSLSETKHRL 191
EEA AI+ + ++ G+ +R + + + R+
Sbjct: 102 EEASSAIQALDGQDLHGRRVRVNYANERPRV 132
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+GGL E L + G ++E +++ DR + +KGY FV F +++EA+KAI +
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 170 IHNKEFKGKTL 180
++ K G+ +
Sbjct: 93 MNEKALNGRVV 103
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 101 LLALPPHGS-EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKT 159
LL + H S ++FI GL + E LR+ E G I+EV+++ + TG++KGY FV F +
Sbjct: 24 LLCVRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNS 83
Query: 160 KEEAQKAIEDIHNKEFKGKTLR 181
+ A A +++H + G+ +R
Sbjct: 84 ETAAATARKELHGQIVDGRRIR 105
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 33/161 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
+V++ +PR A E D+R + + G I+EV L++D+ TG +G V + T +EA AI+
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 170 IHNK-EFKGKT----------------LR--CSLSETKH------RLFIGNVPKTVTEDE 204
+ N+ F G++ LR C E + ++++G + ++ E
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 205 FRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACA 245
+ G +E + ++ +NRG+ FV +YN A
Sbjct: 195 IEEIFSPYG-HIEDVVVL-------RNRGYGFVKFYNREMA 227
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 19/227 (8%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ LP E++L E G + + L+ D+DT +KG A++ F E A +A+E+
Sbjct: 331 LFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEES 390
Query: 171 HNKEFKGKTLRCSLSETKHRLFIGNV---PKTVTE--DEFRKAVDGVGPGVESIELIKDP 225
N F+G+ L + +H N KT+ + +E RKA + G L P
Sbjct: 391 DNSIFQGRLLHVMPAIPRHSNNEENKNQGSKTLKQRREEERKAAEAKGDTRAWNSLFMRP 450
Query: 226 ----QNPSKNRGFA---FV------LYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPK 272
+N ++ G + F+ L + A+ K + ++F+ G K
Sbjct: 451 DTIVENAARKHGVSKSDFLDPEADGLASRYSLAETDGIKETKNAFRKAGVNVESLEEHAK 510
Query: 273 NSPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGK 319
D S L KN+P T + L ++F + G + K+++P K
Sbjct: 511 GKVDGRKRSN-HVLLAKNLPYGATENDLAKMFGKFGSLDKIILPSTK 556
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%)
Query: 286 LYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAERSSALKAVKETE 345
+ VKN+P+ V D+LK+ F R GE+T V + K G R F FI F A A+K
Sbjct: 27 ICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTKNGKSRQFAFIGFRTDQEAQAAIKYFN 86
Query: 346 KYEIDGQVLEVVLAK 360
K +D Q + +A+
Sbjct: 87 KSYLDTQAITCEVAQ 101
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
S + + LP+ ED L++ G+I +V+LM+ ++ G ++ +AF+ F+T +EAQ AI+
Sbjct: 25 SRICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTKN-GKSRQFAFIGFRTDQEAQAAIK 83
Query: 169 DIHNKEFKGKTLRCSLSETKHRLFIGNVPK 198
+ + + C E +L N+P+
Sbjct: 84 YFNKSYLDTQAITC---EVAQKLGDANLPR 110
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++F+ GL + + LR + GD+ E ++ D+ TG +KGY FV ++ + A A+++
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKE 136
Query: 170 IHNKEFKGKTLRCSLSE--------TKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
+K+ G+ L+ + ++F+GNVP V+ + G +E L
Sbjct: 137 -PSKKIDGRMTVTQLAAAGSTGGDVSSRKVFVGNVPFEVSAESLLSEFSKYGE-IEEGPL 194
Query: 222 IKDPQNPSKNRGFAFVLY 239
D + K RGFAF +Y
Sbjct: 195 GFD-KASGKTRGFAFFVY 211
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAI 167
S++FIGGL + + LR+ GD++E R++ DR+TG ++G+ FV F ++E A A+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 33/161 (20%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
+V++ +PR A E D+R + + G I+EV L++D+ TG +G V + T +EA AI+
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 170 IHNK-EFKGKT----------------LR--CSLSETKH------RLFIGNVPKTVTEDE 204
+ N+ F G++ LR C E + ++++G + ++ E
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 205 FRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACA 245
+ G +E + ++ +NRG+ FV +YN A
Sbjct: 195 IEEIFSPYG-HIEDVVVL-------RNRGYGFVKFYNREMA 227
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + ++ +++ E G+ILE ++ D+ TG +KGY FV F+ + A +A
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACV 75
Query: 169 DIHNKEFKGKTLRCSLSE 186
D G+ C+L+
Sbjct: 76 DA-APIIDGRRANCNLAS 92
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GGL + + +R E G+ILE ++ D+ TG +KGY FV FK E A +A +
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQ 84
Query: 169 D 169
+
Sbjct: 85 N 85
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+++F+GGL + + +R E G+ILE ++ D+ TG +KGY FV FK E A +A +
Sbjct: 25 TKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQ 84
Query: 169 D 169
+
Sbjct: 85 N 85
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
++VF+GGL + ++ +++ E G+ILE ++ D+ TG +KGY FV F+ + A +A
Sbjct: 16 TKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRACV 75
Query: 169 DIHNKEFKGKTLRCSLSE 186
D G+ C+L+
Sbjct: 76 DA-APIIDGRRANCNLAS 92
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +F+ GL + + LRE + G+++ R++ DR +G +KG+ FV + T E+A K IE
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110
Query: 169 DIHNKEFKGKTL 180
+ K +G +
Sbjct: 111 GMDGKFLEGWVI 122
>Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:30368066-30365046 | 20130731
Length = 149
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P S++ + LP E+ L++ G I EV+++KD T +KG AF+ + +++A
Sbjct: 36 PLASKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAML 95
Query: 166 AIEDIHNKEFKGKTLRCSLSETKHRLFIGN 195
A+E + + F G+T+ L + F+G+
Sbjct: 96 ALETMDQQSFYGRTISVELEKLDVHNFVGS 125
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 115 GLPRDACEDDLRELCEPMGDILEVRL-MKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNK 173
+P + +D+R L E G +L V L M +++ N+G AFV + EEA +A+ + +
Sbjct: 95 NVPWSSTTEDVRSLFEKYGKVLHVELSMYNKN--RNRGLAFVEMGSPEEASEALNSLQSY 152
Query: 174 EFKGKTLRCSLSET--------------KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
EF G+ + ++ + LF+ N P + ++ D V S
Sbjct: 153 EFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFDSGTGKVVSA 212
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACAD 246
E+I +NP + G+ FV Y + AD
Sbjct: 213 EVIFH-ENPRRPSGYGFVSYKSKKEAD 238
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 115 GLPRDACEDDLRELCEPMGDILEVRL-MKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNK 173
+P + +D+R L E G +L V L M +++ N+G AFV + EEA +A+ + +
Sbjct: 95 NVPWSSTTEDVRSLFEKYGKVLHVELSMYNKN--RNRGLAFVEMGSPEEASEALNSLQSY 152
Query: 174 EFKGKTLRCSLSET--------------KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESI 219
EF G+ + ++ + LF+ N P + ++ D V S
Sbjct: 153 EFDGRIINIQYAKPKKEKIPPPVERKPITYNLFVANFPYEARSKDVKEFFDSGTGKVVSA 212
Query: 220 ELIKDPQNPSKNRGFAFVLYYNNACAD 246
E+I +NP + G+ FV Y + AD
Sbjct: 213 EVIFH-ENPRRPSGYGFVSYKSKKEAD 238
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GGLP E +REL E G + L+KDR+TG++KGYAF + A A+ DI
Sbjct: 362 IFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVY-----ADLAVTDI 416
Query: 171 HNKEFKG 177
G
Sbjct: 417 ACAALNG 423
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 190 RLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSR 249
+LF+GN P V ++ G VE E+I + Q +RGF FV A+ +
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGT-VEIAEVIYNRQT-DLSRGFGFVTMSTVEEAESAV 167
Query: 250 QKMSSSSFKLYGNTPTVTWADPKNS-PDHSASSQ-----VKALYVKNIPENVTTDQLKEL 303
+K + + G + V A PK S P+ + + V +YV N+ V +L+++
Sbjct: 168 EKFNGYDYN--GRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQV 225
Query: 304 FRRHGEVTKV-VMPPGKIGGKRDFGFIHFAERSSALKAVKETEKYEIDGQVLEVVLAKPQ 362
F HG++ V+ + G R FGF+ ++ + A+ + ++G+ + V +
Sbjct: 226 FSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSV---- 281
Query: 363 AEKRPDAYAF 372
AE RP +F
Sbjct: 282 AEDRPRRGSF 291
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 24/177 (13%)
Query: 105 PPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQ 164
PP +++F+G P D + L L G + ++ +R T ++G+ FV T EEA+
Sbjct: 105 PPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAE 164
Query: 165 KAIEDIHNKEFKGKTLRCSLSETKH-----------------RLFIGNVPKTVTEDEFRK 207
A+E + ++ G++L + + K R+++ N+ V +
Sbjct: 165 SAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQ 224
Query: 208 AVDGVGPGVESIELIKDPQNPSKNRGFAFVLY-----YNNACADYSRQKMSSSSFKL 259
G V S ++ D + ++RGF FV N+A A Q + + ++
Sbjct: 225 VFSEHGKIV-SARVVYDRET-GRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRV 279
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%)
Query: 109 SEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIE 168
+ +++ GL E+ LR + G +++V L+ D+ +G+AF+ + T+EE++KAIE
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 169 DIHNKEFKGKTLRCSLSETKHRL 191
+H K G+ + +++ + L
Sbjct: 155 GMHGKFLDGRVIFVEVAKPRSEL 177
>Medtr7g082150.1 | U1 small nuclear ribonucleoprotein | LC |
chr7:31471924-31467830 | 20130731
Length = 566
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+G L R E+ LR++ G + +RL++D TG ++GYAFV F+T+ E ++A D
Sbjct: 65 LFVGRLSRLTTEETLRKVMSEFGQVKNLRLVRDIVTGASRGYAFVEFETEREMRRAYMDA 124
Query: 171 HN 172
H+
Sbjct: 125 HH 126
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 26/247 (10%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ LP E++L E G + +V L+ T +KG AF+ F E A +A+E+
Sbjct: 194 LFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEES 253
Query: 171 HNKEFKGKTLRC----SLSETKHRLFIGNVPKTVTEDEFRKAVDGVGP--GVESIELIKD 224
+N F+G+ LR S E K + G+ +E RKA + G S+ + +D
Sbjct: 254 NNSIFQGRLLRVIPAKSNEENKDQ---GSKTHKQRREEERKAAEAKGDTRAWNSLFMRQD 310
Query: 225 --PQNPSKNRGF---------AFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKN 273
+N ++ G A + N A + + ++FK G + +
Sbjct: 311 TITENVTRKHGVSKSDLLGPEADDVAANVALGETDVILETKNAFKKAG-VNVESLEELAE 369
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAE 333
+ L KN+P T ++L E+F + G + K+++P R + F E
Sbjct: 370 GKVYGVKRSNHVLLAKNLPYGATENELAEMFGKFGSLDKIILP-----STRTLALVIFLE 424
Query: 334 RSSALKA 340
+ A A
Sbjct: 425 PAEAKAA 431
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 26/247 (10%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+ LP E++L E G + +V L+ T +KG AF+ F E A +A+E+
Sbjct: 180 LFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEES 239
Query: 171 HNKEFKGKTLRC----SLSETKHRLFIGNVPKTVTEDEFRKAVDGVGP--GVESIELIKD 224
+N F+G+ LR S E K + G+ +E RKA + G S+ + +D
Sbjct: 240 NNSIFQGRLLRVIPAKSNEENKDQ---GSKTHKQRREEERKAAEAKGDTRAWNSLFMRQD 296
Query: 225 --PQNPSKNRGF---------AFVLYYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKN 273
+N ++ G A + N A + + ++FK G + +
Sbjct: 297 TITENVTRKHGVSKSDLLGPEADDVAANVALGETDVILETKNAFKKAG-VNVESLEELAE 355
Query: 274 SPDHSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGKRDFGFIHFAE 333
+ L KN+P T ++L E+F + G + K+++P R + F E
Sbjct: 356 GKVYGVKRSNHVLLAKNLPYGATENELAEMFGKFGSLDKIILP-----STRTLALVIFLE 410
Query: 334 RSSALKA 340
+ A A
Sbjct: 411 PAEAKAA 417
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 47/72 (65%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VF+GG+P D E D+ + G+++++ L++D+ TG +KG+AF+A++ + A++++
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 171 HNKEFKGKTLRC 182
+ + G+ +R
Sbjct: 98 NGAQVSGRIIRV 109
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 22/199 (11%)
Query: 188 KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY-------- 239
RLF+GN+P +V + + + G VE +E+I D ++ ++RGF FV
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYD-KSTGRSRGFGFVTMSSAAEVEA 140
Query: 240 ----YNNACADYSRQKMSS-------SSFKLYGNTPTVTWADPKNSPDHSASSQVKALYV 288
N D ++++ S +G P P+ P +S ++V
Sbjct: 141 AAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHV 200
Query: 289 KNIPENVTTDQLKELFRRHGEVTKV-VMPPGKIGGKRDFGFIHFAERSSALKAVKETEKY 347
N+ V L+ LF G+V + V+ + G R FGF+ F+ A++ +
Sbjct: 201 GNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGA 260
Query: 348 EIDGQVLEVVLAKPQAEKR 366
+++G+ + V A + +++
Sbjct: 261 DLNGRAIRVSPADSRPKRQ 279
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 22/199 (11%)
Query: 188 KHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLY-------- 239
RLF+GN+P +V + + + G VE +E+I D ++ ++RGF FV
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAG-DVEMVEVIYD-KSTGRSRGFGFVTMSSAAEVEA 140
Query: 240 ----YNNACADYSRQKMSS-------SSFKLYGNTPTVTWADPKNSPDHSASSQVKALYV 288
N D ++++ S +G P P+ P +S ++V
Sbjct: 141 AAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHV 200
Query: 289 KNIPENVTTDQLKELFRRHGEVTKV-VMPPGKIGGKRDFGFIHFAERSSALKAVKETEKY 347
N+ V L+ LF G+V + V+ + G R FGF+ F+ A++ +
Sbjct: 201 GNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGA 260
Query: 348 EIDGQVLEVVLAKPQAEKR 366
+++G+ + V A + +++
Sbjct: 261 DLNGRAIRVSPADSRPKRQ 279
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
VF+ GL + + LRE + G++ +VR++ DR +G +KG+ +V + T E+A K I+ +
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 171 HNKEFKG 177
K +G
Sbjct: 106 DGKFLEG 112
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 36/190 (18%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
+V++ +PR A E D+R + + G I+EV L++D+ TG +G V + T +EA AI+
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 170 IHNK-EFKGKT----------------LR--CSLSETKH------RLFIGNVPKTVTEDE 204
+ N+ F G++ LR C E + ++++G + ++ E
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 205 FRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVLYYNNACADYSRQKMSSSSFKLYG-NT 263
+ G +E + ++ +NRG+ FV +YN A + K +F + G +
Sbjct: 195 IEEIFSPYG-HIEDVVVL-------RNRGYGFVKFYNREMA-LAAIKGLDRTFTMRGCDQ 245
Query: 264 PTVT-WADPK 272
P + +A+PK
Sbjct: 246 PLIVRFAEPK 255
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 79 FVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEV 138
V++ EK P + E+ +Q D + P ++F+ GL DA + L G+I +
Sbjct: 139 LVKQAVEKYPDLSENVRQLAD----VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDC 194
Query: 139 RLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSE------------ 186
+ + D+ +G +KGYAF+ FK + ++A++ K +T C L+
Sbjct: 195 KAVTDKASGKSKGYAFILFKHRTGCRRALKQPQ-KVIGNRTTSCQLASAGPVPAPPPNAP 253
Query: 187 -----TKHRLFIGNVPKTVTED---EFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVL 238
T+ ++F+ NV + EF K V G ++ + K +GFA +
Sbjct: 254 PVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLD-----KATGKPKGFALFV 308
Query: 239 Y 239
Y
Sbjct: 309 Y 309
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 79 FVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEV 138
V++ EK P + E+ +Q D + P ++F+ GL DA + L G+I +
Sbjct: 139 LVKQAVEKYPDLSENVRQLAD----VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDC 194
Query: 139 RLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSE------------ 186
+ + D+ +G +KGYAF+ FK + ++A++ K +T C L+
Sbjct: 195 KAVTDKASGKSKGYAFILFKHRTGCRRALKQPQ-KVIGNRTTSCQLASAGPVPAPPPNAP 253
Query: 187 -----TKHRLFIGNVPKTVTED---EFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVL 238
T+ ++F+ NV + EF K V G ++ + K +GFA +
Sbjct: 254 PVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLD-----KATGKPKGFALFV 308
Query: 239 Y 239
Y
Sbjct: 309 Y 309
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 79 FVEEDGEKPPLIDEDEKQKHDELLALPPHGSEVFIGGLPRDACEDDLRELCEPMGDILEV 138
V++ EK P + E+ +Q D + P ++F+ GL DA + L G+I +
Sbjct: 139 LVKQAVEKYPDLSENVRQLAD----VDPAHRKIFVHGLGWDATAETLTTTFSKYGEIEDC 194
Query: 139 RLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDIHNKEFKGKTLRCSLSE------------ 186
+ + D+ +G +KGYAF+ FK + ++A++ K +T C L+
Sbjct: 195 KAVTDKASGKSKGYAFILFKHRTGCRRALKQPQ-KVIGNRTTSCQLASAGPVPAPPPNAP 253
Query: 187 -----TKHRLFIGNVPKTVTED---EFRKAVDGVGPGVESIELIKDPQNPSKNRGFAFVL 238
T+ ++F+ NV + EF K V G ++ + K +GFA +
Sbjct: 254 PVSEYTQRKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLD-----KATGKPKGFALFV 308
Query: 239 Y 239
Y
Sbjct: 309 Y 309
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 9/104 (8%)
Query: 106 PHGS---EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEE 162
P+G+ ++++G L + E +LRE+ EP G I V+L D +TG KG+ FV F E
Sbjct: 297 PYGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEH 356
Query: 163 AQKAIEDIHNK-EFKGKTLRCSLSETKHRLFIGNVPKTVTEDEF 205
A KA + ++ K E G+T++ S S T H +G+ T +F
Sbjct: 357 A-KAAQSLNGKLEIAGRTIKVS-SVTDH---VGSQDTTTKSADF 395
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 19/150 (12%)
Query: 105 PPHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQ 164
PP +++F+G P D + L L G + ++ +R T ++G+ FV T EEA+
Sbjct: 105 PPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAE 164
Query: 165 KAIEDIHNKEFKGKTLRCSLSETKH-----------------RLFIGNVPKTVTEDEFRK 207
A+E + ++ G++L + + K R+++ N+ V +
Sbjct: 165 SAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQ 224
Query: 208 AVDGVGPGVESIELIKDPQNPSKNRGFAFV 237
G V S ++ D + ++RGF FV
Sbjct: 225 VFSEHGKIV-SARVVYDRET-GRSRGFGFV 252
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GG+P E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 472 NGIKMGDKTL 481
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 42/68 (61%)
Query: 106 PHGSEVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQK 165
P +++FI GLP E L ++ G++ +V+L+ D+ TG + G+A++ F ++ AQ
Sbjct: 68 PSSTKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQS 127
Query: 166 AIEDIHNK 173
A ++++ K
Sbjct: 128 AAKEMNGK 135
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 114/276 (41%), Gaps = 46/276 (16%)
Query: 110 EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIED 169
++ + LP A E+++R+ G + EV + + DTG +KG+AFV F K++A+ AI
Sbjct: 283 KLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRK 342
Query: 170 IHNKEFKGKTLRCSL----------------SETKHRLFIGNVPKTVTEDEF----RKAV 209
++ +F + + SE + T TED+ +K+
Sbjct: 343 LNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDGSTTTEDDLENTDKKSD 402
Query: 210 DGVGPGVESI--ELIKDPQNPSKNRGFAFVLYYN---NACADYSRQKMSSSSFKLYGNTP 264
G ++S+ E + + K A + N ++ D S S SS + N P
Sbjct: 403 QGDDSDIDSVVEEDVPSEDDFDKEADIARKVLNNLITSSAKDESVNNDSVSSEE--KNKP 460
Query: 265 ----TVTWADPKNSPDHSASSQV--------------KALYVKNIPENVTTDQLKELFRR 306
TV AD K S + S + + +++ N+P + T++LK+ F
Sbjct: 461 KSKETVKGADSKTSKESDKVSDISKPETSKETEDDLHRTVFITNLPFELDTEELKQRFSA 520
Query: 307 HGEVTKVVMPPGKIGGK-RDFGFIHFAERSSALKAV 341
GEV ++ + R GF+ F +A A+
Sbjct: 521 FGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAADNAI 556
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GG+P E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 470 NGIKMGDKTL 479
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GG+P E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 472 NGIKMGDKTL 481
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GG+P E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 470 NGIKMGDKTL 479
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 106 PHGS---EVFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEE 162
P+G+ ++++G L + E LRE+ EP G + V+L D +TG KG+ F+ F E
Sbjct: 311 PYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEH 370
Query: 163 AQKAIEDIHNK-EFKGKTLRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVESIEL 221
A KA + ++ K E G+T++ S S H IG+ T +F G+ +S L
Sbjct: 371 A-KAAQSLNGKLEIAGRTIKVS-SVADH---IGSQDTTTKSADFDDDEGGLALNAQSRAL 425
Query: 222 I 222
+
Sbjct: 426 L 426
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GG+P E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 472 NGIKMGDKTL 481
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 28/203 (13%)
Query: 180 LRCSLSETKHRLFIGNVPKTVTEDEFRKAVDGVGPGVES-IELIKDPQNPSKNRGFAFVL 238
+ + K +LF+G + + TED + G + S I + + P RGF FV
Sbjct: 1 MNFKMDSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIP---RGFGFVT 57
Query: 239 YYNNACADYSRQKMSSSSFKLYGNTPTVTWADPKNSPDHSASS----------------- 281
+ + + A + Q + + G V A P++
Sbjct: 58 FSDISSAHNALQDTHA----ILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEH 113
Query: 282 -QVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKIGGK-RDFGFIHFAERSSALK 339
+ K ++V +P N++ ++ K F R G +T VV+ + + R FGFI F S ++
Sbjct: 114 IRTKKIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDS-VQ 172
Query: 340 AVKETEKYEIDGQVLEVVLAKPQ 362
+V ++++G+ +EV A P+
Sbjct: 173 SVMMRSFHDLNGRQVEVKRAVPR 195
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GG+P E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 410 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 469
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 470 NGIKMGDKTL 479
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 111 VFIGGLPRDACEDDLRELCEPMGDILEVRLMKDRDTGDNKGYAFVAFKTKEEAQKAIEDI 170
+F+GG+P E +REL E G + L+KDR+TG++KGYAF ++ A +
Sbjct: 412 IFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAAL 471
Query: 171 HNKEFKGKTL 180
+ + KTL
Sbjct: 472 NGIKMGDKTL 481