Miyakogusa Predicted Gene
- Lj1g3v4898010.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4898010.2 Non Characterized Hit- tr|H2MUX6|H2MUX6_ORYLA
Uncharacterized protein OS=Oryzias latipes GN=WDR89
PE,31.17,3e-18,WD40,WD40 repeat; WD40
repeat-like,WD40-repeat-containing domain; WD_REPEATS_2,WD40 repeat;
WD_REPEA,CUFF.33544.2
(284 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g058590.1 | transducin/WD40 repeat protein | HC | chr8:202... 511 e-145
Medtr7g108870.1 | transducin/WD40 repeat protein | HC | chr7:442... 511 e-145
Medtr7g108870.2 | transducin/WD40 repeat protein | HC | chr7:442... 479 e-136
Medtr8g058557.1 | transducin/WD40 repeat protein | HC | chr8:201... 422 e-118
Medtr1g072140.1 | transducin/WD40 repeat protein | HC | chr1:320... 55 6e-08
Medtr2g016160.2 | peroxisomal targeting signal type 2 receptor |... 54 2e-07
Medtr2g016160.1 | peroxisomal targeting signal type 2 receptor |... 54 2e-07
Medtr5g022690.1 | U4/U6 small nuclear ribonucleoprotein PRP4 | H... 53 4e-07
Medtr7g076230.1 | periodic tryptophan protein | HC | chr7:286742... 50 2e-06
Medtr1g054300.1 | WD-40 repeat protein/notchless protein, putati... 50 2e-06
>Medtr8g058590.1 | transducin/WD40 repeat protein | HC |
chr8:20206221-20201505 | 20130731
Length = 378
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 238/278 (85%), Positives = 261/278 (93%)
Query: 7 MDIEEQPSPPTPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWTAMAVSLSTNAVKLYSPV 66
MD+EEQ P PNNVKRFGLKNSIQTNFGDDYVFQIIPKDDW++MAVSLSTNAVKLYSPV
Sbjct: 1 MDVEEQRPFPIPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAVKLYSPV 60
Query: 67 AGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEV 126
GQYYG+ KGH++TINQILFSG SNP++L+SCSSDGTIR WDTRTFQQVS I+AGPSQE+
Sbjct: 61 MGQYYGECKGHTATINQILFSGHSNPNILSSCSSDGTIRTWDTRTFQQVSIINAGPSQEI 120
Query: 127 FSISLGGPNGNLIAAGCKSKILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLISAS 186
FS S+GGP+GNL+AAGC S++L WDWRN KQIACLEDSHV+DVTQVHF+P+ERGKLISAS
Sbjct: 121 FSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQVHFIPEERGKLISAS 180
Query: 187 EDGLICTFDTTGDINDDDHLESVINVGTSIAKVGLFGESYQKLWCLTHIETLGVWDWKDG 246
DGL+C FDTTGDINDDDHLESVINVGTSIAKVG FGESYQKLWCLTHIETLG+WDWK+G
Sbjct: 181 VDGLVCIFDTTGDINDDDHLESVINVGTSIAKVGFFGESYQKLWCLTHIETLGIWDWKEG 240
Query: 247 RNEVNFSDARTLASESWNLDHVDYFVDCHYSKEAEKLW 284
RNEVNFSD RTLASESWNLDHVDYFVDCHYS+EAEKLW
Sbjct: 241 RNEVNFSDTRTLASESWNLDHVDYFVDCHYSREAEKLW 278
>Medtr7g108870.1 | transducin/WD40 repeat protein | HC |
chr7:44290856-44285699 | 20130731
Length = 378
Score = 511 bits (1317), Expect = e-145, Method: Compositional matrix adjust.
Identities = 238/278 (85%), Positives = 261/278 (93%)
Query: 7 MDIEEQPSPPTPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWTAMAVSLSTNAVKLYSPV 66
MD+EEQ P PNNVKRFGLKNSIQTNFGDDYVFQIIPKDDW++MAVSLSTNAVKLYSPV
Sbjct: 1 MDVEEQRPFPIPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAVKLYSPV 60
Query: 67 AGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEV 126
GQYYG+ KGH++TINQILFSG SNP++L+SCSSDGTIR WDTRTFQQVS I+AGPSQE+
Sbjct: 61 MGQYYGECKGHTATINQILFSGHSNPNILSSCSSDGTIRTWDTRTFQQVSIINAGPSQEI 120
Query: 127 FSISLGGPNGNLIAAGCKSKILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLISAS 186
FS S+GGP+GNL+AAGC S++L WDWRN KQIACLEDSHV+DVTQVHF+P+ERGKLISAS
Sbjct: 121 FSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQVHFIPEERGKLISAS 180
Query: 187 EDGLICTFDTTGDINDDDHLESVINVGTSIAKVGLFGESYQKLWCLTHIETLGVWDWKDG 246
DGL+C FDTTGDINDDDHLESVINVGTSIAKVG FGESYQKLWCLTHIETLG+WDWK+G
Sbjct: 181 VDGLVCIFDTTGDINDDDHLESVINVGTSIAKVGFFGESYQKLWCLTHIETLGIWDWKEG 240
Query: 247 RNEVNFSDARTLASESWNLDHVDYFVDCHYSKEAEKLW 284
RNEVNFSD RTLASESWNLDHVDYFVDCHYS+EAEKLW
Sbjct: 241 RNEVNFSDTRTLASESWNLDHVDYFVDCHYSREAEKLW 278
>Medtr7g108870.2 | transducin/WD40 repeat protein | HC |
chr7:44290856-44287233 | 20130731
Length = 268
Score = 479 bits (1234), Expect = e-136, Method: Compositional matrix adjust.
Identities = 224/266 (84%), Positives = 247/266 (92%)
Query: 7 MDIEEQPSPPTPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWTAMAVSLSTNAVKLYSPV 66
MD+EEQ P PNNVKRFGLKNSIQTNFGDDYVFQIIPKDDW++MAVSLSTNAVKLYSPV
Sbjct: 1 MDVEEQRPFPIPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAVKLYSPV 60
Query: 67 AGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEV 126
GQYYG+ KGH++TINQILFSG SNP++L+SCSSDGTIR WDTRTFQQVS I+AGPSQE+
Sbjct: 61 MGQYYGECKGHTATINQILFSGHSNPNILSSCSSDGTIRTWDTRTFQQVSIINAGPSQEI 120
Query: 127 FSISLGGPNGNLIAAGCKSKILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLISAS 186
FS S+GGP+GNL+AAGC S++L WDWRN KQIACLEDSHV+DVTQVHF+P+ERGKLISAS
Sbjct: 121 FSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQVHFIPEERGKLISAS 180
Query: 187 EDGLICTFDTTGDINDDDHLESVINVGTSIAKVGLFGESYQKLWCLTHIETLGVWDWKDG 246
DGL+C FDTTGDINDDDHLESVINVGTSIAKVG FGESYQKLWCLTHIETLG+WDWK+G
Sbjct: 181 VDGLVCIFDTTGDINDDDHLESVINVGTSIAKVGFFGESYQKLWCLTHIETLGIWDWKEG 240
Query: 247 RNEVNFSDARTLASESWNLDHVDYFV 272
RNEVNFSD RTLASESWNLDHV F+
Sbjct: 241 RNEVNFSDTRTLASESWNLDHVSSFL 266
>Medtr8g058557.1 | transducin/WD40 repeat protein | HC |
chr8:20187274-20184482 | 20130731
Length = 248
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/233 (84%), Positives = 217/233 (93%)
Query: 7 MDIEEQPSPPTPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWTAMAVSLSTNAVKLYSPV 66
MD+EEQ P PNNVKRFGLKNSIQTNFGDDYVFQIIPKDDW++MAVSLSTNAVKLYSPV
Sbjct: 1 MDVEEQRPFPIPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWSSMAVSLSTNAVKLYSPV 60
Query: 67 AGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEV 126
GQYYG+ KGH++TINQILFSG SNP++L+SCSSDGTIR WDTRTFQQVS I+AGPSQE+
Sbjct: 61 MGQYYGECKGHTATINQILFSGHSNPNILSSCSSDGTIRTWDTRTFQQVSIINAGPSQEI 120
Query: 127 FSISLGGPNGNLIAAGCKSKILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLISAS 186
FS S+GGP+GNL+AAGC S++L WDWRN KQIACLEDSHV+DVTQVHF+P+ERGKLISAS
Sbjct: 121 FSFSIGGPSGNLVAAGCDSQVLLWDWRNNKQIACLEDSHVDDVTQVHFIPEERGKLISAS 180
Query: 187 EDGLICTFDTTGDINDDDHLESVINVGTSIAKVGLFGESYQKLWCLTHIETLG 239
DGL+C FDTTGDINDDDHLESVINVGTSIAKVG FGESYQKLWCLTHIETLG
Sbjct: 181 VDGLVCIFDTTGDINDDDHLESVINVGTSIAKVGFFGESYQKLWCLTHIETLG 233
>Medtr1g072140.1 | transducin/WD40 repeat protein | HC |
chr1:32005480-32003360 | 20130731
Length = 316
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 13/194 (6%)
Query: 62 LYSPVAGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAG 121
+YS GHS IN I +S S+ H + S S D T+R WD T V T+ G
Sbjct: 53 IYSSTTLSLLHRLTGHSEGINDIAWS--SDSHYICSASDDKTLRIWDANTGDCVKTL-RG 109
Query: 122 PSQEVFSISLGGPNGNLIAAGC-KSKILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERG 180
VF ++ P N I +G + W+ + K + ++ +H VT V F D G
Sbjct: 110 HGHNVFCVNF-NPQSNYIVSGSFDETVRVWEVKTGKSVHVIK-AHAMPVTSVDFNRD--G 165
Query: 181 KLI-SASEDGLICTFDTTGDINDDDHLESVINVGTSIAKVGLFGESYQKLWCLTHIETLG 239
LI S S DG +DT N L+++I+ F + + + T +TL
Sbjct: 166 SLIVSGSHDGSCKIWDT----NSGALLKTLIDDKVPAVSFAKFSPNGKFILVATLNDTLK 221
Query: 240 VWDWKDGRNEVNFS 253
+W++ GR+ +S
Sbjct: 222 LWNYAAGRSLKMYS 235
>Medtr2g016160.2 | peroxisomal targeting signal type 2 receptor | HC
| chr2:4893425-4894823 | 20130731
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 14/216 (6%)
Query: 15 PPTPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWTAMAVSLSTNAVKLYSPVAGQYYGDF 74
PPT N ++ F +++ + + D + + +D + + A + VKL++ F
Sbjct: 94 PPTSNPIRSFH-EHTREVHSVD---YNPVRRDSFLSAAWD---DTVKLWTVDRPTSVRTF 146
Query: 75 KGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEVFSISLGGP 134
K H+ + +++ P + V S S D T+R WD R + A E+ S
Sbjct: 147 KEHAYCVYSSVWN-PRHADVFASASGDCTVRIWDVREPGSTMILPAH-EHEILSCDWNKY 204
Query: 135 NGNLIAAGCKSK-ILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLISASEDGLICT 193
+ +IA G K + WD R+ + + + H V +V F P R L+S S D +C
Sbjct: 205 DECIIATGSVDKSVKVWDVRSYRVPVAVLNGHGYAVRKVKFSPHVRNLLVSCSYDMTVCV 264
Query: 194 FDTTGD----INDDDHLESVINVGTSIAKVGLFGES 225
+D + D H E + V S+ GL +
Sbjct: 265 WDFMVEDALVSRYDHHTEFAVGVDMSVLVEGLLAST 300
>Medtr2g016160.1 | peroxisomal targeting signal type 2 receptor | HC
| chr2:4893425-4894823 | 20130731
Length = 318
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 14/216 (6%)
Query: 15 PPTPNNVKRFGLKNSIQTNFGDDYVFQIIPKDDWTAMAVSLSTNAVKLYSPVAGQYYGDF 74
PPT N ++ F +++ + + D + + +D + + A + VKL++ F
Sbjct: 94 PPTSNPIRSFH-EHTREVHSVD---YNPVRRDSFLSAAWD---DTVKLWTVDRPTSVRTF 146
Query: 75 KGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEVFSISLGGP 134
K H+ + +++ P + V S S D T+R WD R + A E+ S
Sbjct: 147 KEHAYCVYSSVWN-PRHADVFASASGDCTVRIWDVREPGSTMILPAH-EHEILSCDWNKY 204
Query: 135 NGNLIAAGCKSK-ILFWDWRNRKQIACLEDSHVEDVTQVHFVPDERGKLISASEDGLICT 193
+ +IA G K + WD R+ + + + H V +V F P R L+S S D +C
Sbjct: 205 DECIIATGSVDKSVKVWDVRSYRVPVAVLNGHGYAVRKVKFSPHVRNLLVSCSYDMTVCV 264
Query: 194 FDTTGD----INDDDHLESVINVGTSIAKVGLFGES 225
+D + D H E + V S+ GL +
Sbjct: 265 WDFMVEDALVSRYDHHTEFAVGVDMSVLVEGLLAST 300
>Medtr5g022690.1 | U4/U6 small nuclear ribonucleoprotein PRP4 | HC |
chr5:8972619-8969829 | 20130731
Length = 488
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 8/112 (7%)
Query: 68 GQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRAWDTRTFQQVSTIDAGPSQEVF 127
G FKGHS + +I F PS + L + S D T R WD T +++ + G S+EV+
Sbjct: 269 GSLLRTFKGHSDRLARIAFH-PSGKY-LGTASDDKTWRLWDVETGEEL-LLQEGHSREVY 325
Query: 128 SISLGGPNGNLIAAGCKSKIL--FWDWRNRKQIACLEDSHVEDVTQVHFVPD 177
S++ +G+L AA C L WD R ++ + LE HV+ + + F P+
Sbjct: 326 SLAF-HHDGSL-AASCGKDALARVWDLRTKRSLLALE-GHVKPIRGISFSPN 374
>Medtr7g076230.1 | periodic tryptophan protein | HC |
chr7:28674290-28681135 | 20130731
Length = 880
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 18/218 (8%)
Query: 47 DWTAMAVSLSTNAVKLYSPVAGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGTIRA 106
D +A N VK+++ +G + F H++ + + F +N L S S DGTIRA
Sbjct: 380 DSQLLATGADDNKVKVWTVSSGFCFVTFSEHTNAVTALHFMASNN--CLLSASLDGTIRA 437
Query: 107 WDTRTFQQVSTIDAGPSQEVFSISLGGPNGNLIAAGCKS--KILFWDWRNRKQIACLEDS 164
WD ++ T S++ S++ +G +I AG +I W R + + L
Sbjct: 438 WDLVRYRNFRTFTTPSSRQFVSLA-ADQSGEVICAGTSDSFEIFVWSMRTGRLLDVLS-G 495
Query: 165 HVEDVTQVHFVPDERGKLISASEDGLIC---TFDTTGDINDDDHLESVINVGTSIAKVGL 221
H V + F P L S+S D + FD G + H V+ V +
Sbjct: 496 HEAPVHGLVFSPTN-AVLASSSWDKTVRLWDVFDGKGAVETWPHTHDVLTV--------V 546
Query: 222 FGESYQKLWCLTHIETLGVWDWKDGRNEVNFSDARTLA 259
F ++L C T + WD DG +R +A
Sbjct: 547 FRPDGKQLACSTLDGQIYFWDPVDGLLMYTIEGSRDIA 584
>Medtr1g054300.1 | WD-40 repeat protein/notchless protein, putative
| HC | chr1:23359694-23368343 | 20130731
Length = 483
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 44 PKDDWTAMAVSLSTNAVKLYSPVAGQYYGDFKGHSSTINQILFSGPSNPHVLNSCSSDGT 103
P W A A +VK+++ G++ F+GH + QI +S S +L S S D T
Sbjct: 380 PDGQWIASASF--DKSVKIWNGTTGKFVTAFRGHVGPVYQISWSADSR--LLLSGSKDST 435
Query: 104 IRAWDTRTFQQVSTIDAGPSQEVFSISLGGPNGNLIAAGCKSKIL 148
++ WD RT +++ G + EVFS+ P+G +A+G K K+L
Sbjct: 436 LKVWDIRT-RKLKQDLPGHADEVFSVDW-SPDGEKVASGGKDKVL 478