Miyakogusa Predicted Gene

Lj1g3v4862950.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4862950.1 Non Characterized Hit- tr|D7M453|D7M453_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,39.9,7e-19,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.33472.1
         (196 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g109410.1 | multidrug resistance protein ABC transporter f...   246   1e-65
Medtr1g087230.1 | multidrug resistance protein ABC transporter f...   224   5e-59
Medtr1g108640.1 | DUF4228 domain protein | HC | chr1:49096797-49...    54   1e-07
Medtr8g107420.1 | DUF4228 domain protein | HC | chr8:45404345-45...    49   3e-06

>Medtr7g109410.1 | multidrug resistance protein ABC transporter
           family protein | HC | chr7:44730509-44729481 | 20130731
          Length = 197

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 131/202 (64%), Positives = 152/202 (75%), Gaps = 11/202 (5%)

Query: 1   MGNHISSFPASDATGKIVYCDGSVQEFDQPLTVAELMLEHPQQVVVEFHSALNHQKRPTP 60
           MGNHIS      AT KI+Y DGSVQEFDQP+TVAELML+HP+ VVVEFHSA+N QK+PTP
Sbjct: 1   MGNHISF----HATTKIIYYDGSVQEFDQPITVAELMLDHPKHVVVEFHSAMN-QKKPTP 55

Query: 61  LPADKKLEMKKTYVMLPMKRGKPVGLSGEDCHRVLSIVNSSLHS-NYLMCS-GFLPWIAR 118
           LPADK LEM K YVM+PMK GKPVGLS EDC R+LSI NS+L++ NYLM S GF+PW+ R
Sbjct: 56  LPADKNLEMNKKYVMVPMKPGKPVGLSAEDCSRILSIANSALNTNNYLMSSQGFVPWLVR 115

Query: 119 VFKTESPANGVAET-LQI-KEERYDFSEFLPEMIEERPEY--MSRQLSGKEWKPSLDTXX 174
             K +    G  ET LQI +EER++F EFLPEM+EER EY  +SRQLSGK WKPSLDT  
Sbjct: 116 FLKKKKVEIGEVETSLQINEEERFNFCEFLPEMMEERAEYLNLSRQLSGKGWKPSLDTIK 175

Query: 175 XXXXXXXLSRWFFLKSFIGTRI 196
                  +S W FL SFIG +I
Sbjct: 176 EKKVKRKISGWLFLTSFIGAKI 197


>Medtr1g087230.1 | multidrug resistance protein ABC transporter
           family protein | HC | chr1:39083489-39084567 | 20130731
          Length = 192

 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 144/194 (74%), Gaps = 5/194 (2%)

Query: 1   MGNHISSFPASDATGKIVYCDGSVQEFDQPLTVAELMLEHPQQVVVEFHSALNHQKRPTP 60
           MGN +S F  SD TGK+V+ DGSV EFD+ +TVAELM++HPQ+VVVEFHSA+N QKRPTP
Sbjct: 1   MGNQVS-FRPSDPTGKVVFLDGSVHEFDEAITVAELMMDHPQKVVVEFHSAVN-QKRPTP 58

Query: 61  LPADKKLEMKKTYVMLPMKRGKPVGLSGEDCHRVLSIVNSSLHSNYLMCSG-FLPWIARV 119
           LPADKKL+M K Y+MLP+K+GKP+GLSGE+  RVL +VNS L+SNY++CS  FLPW + +
Sbjct: 59  LPADKKLDMNKIYLMLPVKQGKPIGLSGEETRRVLLMVNSILNSNYVLCSSKFLPWFSSL 118

Query: 120 FKTES--PANGVAETLQIKEERYDFSEFLPEMIEERPEYMSRQLSGKEWKPSLDTXXXXX 177
                        E ++ K ER+DFSE LPE++E RP+Y++RQ+SGK WKPSLDT     
Sbjct: 119 CHNSEIVEPQRKEEVMEEKGERHDFSENLPEIMEGRPDYLNRQISGKGWKPSLDTIKEKN 178

Query: 178 XXXXLSRWFFLKSF 191
                + W FLKSF
Sbjct: 179 IEKKHTHWLFLKSF 192


>Medtr1g108640.1 | DUF4228 domain protein | HC |
           chr1:49096797-49095491 | 20130731
          Length = 173

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 7/106 (6%)

Query: 1   MGNHISSFPA-----SDATGKIVYCDGSVQEFDQPLTVAELMLEHPQQVVVEFHSALNHQ 55
           MGN++S   A     +    +++   G V++F + +  AELMLE+P   +V   S L+  
Sbjct: 1   MGNYVSCTLAPPLMRNAKATRVILPTGEVKQFREIMKAAELMLENPNYFLVNSRS-LHIS 59

Query: 56  KRPTPLPADKKLEMKKTYVMLPMKRGKPVGLSGEDCHRVLSIVNSS 101
            R +PL AD++LE    Y+  PM+R   V ++G D   +    NS+
Sbjct: 60  TRFSPLAADEELEFGNVYIFFPMRRLNSV-VTGADMAVLFLAANSA 104


>Medtr8g107420.1 | DUF4228 domain protein | HC |
           chr8:45404345-45403348 | 20130731
          Length = 166

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 24/177 (13%)

Query: 1   MGNHISSFPASDATGKIVYCDGSVQEFDQPLTVAELMLEHPQQVVVEFHSALNHQKRPTP 60
           MGN  S  P +    K++  DG ++   + L  AELM+E+P Q V +  S L    R   
Sbjct: 1   MGNVASCTP-TKGVFKVLLLDGRIETHSKALRAAELMVEYPGQFVCD-SSYLKVGHRIQG 58

Query: 61  LPADKKLEMKKTYVMLPMKRGKPVGLSGEDCHRVLSIVN-----SSLHSNYLMCSGFLPW 115
           L AD++LE +K Y +LPM       L     H  +S +N     ++ H+++       P 
Sbjct: 59  LLADEELETRKFYFLLPMDL-----LYSVLTHEEMSALNYKASRATKHASFNNLGKIFPV 113

Query: 116 IARVFKTESPANGVAETLQIKEERYDFSEFLPEMIEERPEYMSRQLSGKEWKPSLDT 172
            +      S A  +     ++ + Y       EM+ E  E + R    + W+P+L+T
Sbjct: 114 FSEFCMFPSEAKKIV----LESDNY-------EMLRE-AEPVKRYSKQRSWRPALET 158