Miyakogusa Predicted Gene

Lj1g3v4830130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4830130.1 Non Characterized Hit- tr|I1NBJ2|I1NBJ2_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.32846
PE,45.84,0,seg,NULL; HLH, helix-loop-helix DNA-binding
domain,Helix-loop-helix domain; HLH,Helix-loop-helix dom,CUFF.33362.1
         (470 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g110810.1 | helix loop helix DNA-binding domain protein | ...   206   5e-53
Medtr1g084980.1 | phytochrome-interacting factor 3.1 | HC | chr1...    99   1e-20
Medtr7g111320.1 | phytochrome-interacting factor 3.1 | HC | chr7...    91   2e-18
Medtr1g069155.1 | transcription factor | HC | chr1:29736862-2972...    86   1e-16
Medtr7g099540.2 | transcription factor | HC | chr7:39933891-3993...    82   1e-15
Medtr7g099540.1 | transcription factor | HC | chr7:39933891-3993...    76   7e-14
Medtr3g449770.1 | transcription factor | HC | chr3:16987989-1699...    74   4e-13
Medtr1g019240.1 | helix loop helix DNA-binding domain protein | ...    69   1e-11
Medtr4g131160.1 | BHLH transcription factor | HC | chr4:54719229...    65   2e-10
Medtr4g131160.2 | BHLH transcription factor | HC | chr4:54719229...    65   2e-10
Medtr5g017040.1 | helix loop helix DNA-binding domain protein | ...    63   6e-10
Medtr1g080890.1 | transcription factor UNE12-like protein | HC |...    58   2e-08
Medtr1g070870.2 | basic helix loop helix protein BHLH4 | HC | ch...    58   2e-08
Medtr1g070870.1 | basic helix loop helix protein BHLH4 | HC | ch...    58   2e-08
Medtr1g084980.2 | phytochrome-interacting factor 3.1 | HC | chr1...    55   2e-07
Medtr3g116770.1 | BHLH transcription factor | HC | chr3:54614928...    54   2e-07
Medtr3g116770.2 | BHLH transcription factor | HC | chr3:54614928...    54   2e-07
Medtr5g037250.1 | transcription factor | HC | chr5:16271354-1626...    54   3e-07

>Medtr7g110810.1 | helix loop helix DNA-binding domain protein | HC
           | chr7:45421992-45424245 | 20130731
          Length = 373

 Score =  206 bits (523), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 160/382 (41%), Positives = 183/382 (47%), Gaps = 79/382 (20%)

Query: 89  SQQCLPYSAPLKKPRMDSSLTPLTNSQKQ-------------NFSNFLIPEVFLKSTNHH 135
           S     Y  PLKKPR+DS+ T  TNSQKQ             NFSNF IP VFLKS    
Sbjct: 17  SSHMFTYLTPLKKPRVDSNQTATTNSQKQYLMGCEYQKNGKVNFSNFSIPAVFLKSNQQ- 75

Query: 136 RKSATQTTRIALSPRVKEIEHSKVEKSTSSKGATDNSTVIESAKGSHVLTGFRGQRFLTT 195
                         RV+E E   V                         T F+ Q+ LT 
Sbjct: 76  --------------RVQEKESKAV-----------------------ACTKFQQQKHLTL 98

Query: 196 NKW-NTKSIVEGSAAAPPPLDEHSEAV-SHSNSSNGTTQYEALAKGKAKNDNLCNERAIA 253
           N    + S  E S    P +DEHSEA  SH+N+           K KA   NLCN  A  
Sbjct: 99  NAATKSNSGYERSRELLPTVDEHSEAAASHTNAP------RIRGKRKASAINLCN--AQK 150

Query: 254 SSSVCSIEASYNPNFGSRKHXXXXXXXXXXXXXXEETEDYTVKEVQARDGTRIKRR-RSA 312
            SSVCS+EAS + NFG RK               EET++  VKE   R+G R+KR  R+A
Sbjct: 151 PSSVCSLEASNDLNFGVRKSHEDTDDSPYLSDNDEETQENIVKEKPVREGNRVKRSYRNA 210

Query: 313 EIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIMSMGRGX 372
           ++HNLSE             LKELIPNCNK+DKASMLDDAIDYLKTLK QLQIMSMGR  
Sbjct: 211 KVHNLSERKRRDKINEKIRALKELIPNCNKMDKASMLDDAIDYLKTLKLQLQIMSMGRAL 270

Query: 373 X----------XXXXXXXXXXXXXGVGMGGIPCNPPQFSIPSL-PGFTDN---RLQMFGF 418
                                    + MG  P    QF IP +  G T+N   R+QMFGF
Sbjct: 271 CMPLNHFMMLPAHHMNMNMNMNAQHLMMGFRP--HVQFPIPQMGDGVTNNNNDRVQMFGF 328

Query: 419 SNQQIPNMSIPNTPFF-PIIGN 439
           SNQ  P MSIPN PF  PIIGN
Sbjct: 329 SNQLPPQMSIPNAPFIPPIIGN 350


>Medtr1g084980.1 | phytochrome-interacting factor 3.1 | HC |
           chr1:37932621-37937084 | 20130731
          Length = 721

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 77/142 (54%), Gaps = 11/142 (7%)

Query: 237 AKGKAKNDNLCNERAIASSSVCS----IEASYNPNFGSRKHXXXXXXXXXXXXXXEETED 292
           AKG A  D    E A+ASSSVCS       S +PN   R                E+ ED
Sbjct: 392 AKGHAAADKGM-EVAVASSSVCSGNGADRGSDDPN---RDLKRKSRDTEDSECHSEDVED 447

Query: 293 YTV---KEVQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASML 349
            +V   K    R     KR R+AE+HNLSE             L+ELIPNCNK+DKASML
Sbjct: 448 ESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASML 507

Query: 350 DDAIDYLKTLKHQLQIMSMGRG 371
           D+AI+YLKTL+ Q+Q+MSMG G
Sbjct: 508 DEAIEYLKTLQLQVQMMSMGAG 529


>Medtr7g111320.1 | phytochrome-interacting factor 3.1 | HC |
           chr7:45695946-45691940 | 20130731
          Length = 691

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/129 (44%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 247 CNERAIASSSVCS---IEASYNPNFGSRKHXXXXXXXXXXXXXXEETEDYTVKEV-QARD 302
           C E  +ASSSVCS   +  S +    + K                E E   VK     R 
Sbjct: 371 CTELTVASSSVCSDNGVHRSSDDANQNLKRKNLDSEDSEWHSEDFEDESIGVKRTDHGRG 430

Query: 303 GTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQ 362
            T  K+ RS E+HNLSE             L+ELIPNCNK DKASMLD+AI+YLK+L+ Q
Sbjct: 431 VTGSKKNRSTEVHNLSERRRRDRINERMRALQELIPNCNKADKASMLDEAIEYLKSLQLQ 490

Query: 363 LQIMSMGRG 371
           LQIMSMG G
Sbjct: 491 LQIMSMGGG 499


>Medtr1g069155.1 | transcription factor | HC |
           chr1:29736862-29728341 | 20130731
          Length = 534

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 289 ETEDYTVKE--VQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKA 346
           E  D+  +E   Q R  T  KR R+AE+HNLSE             L+ELIP CNK DKA
Sbjct: 300 EDVDFECREEKKQHRGSTSAKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKA 359

Query: 347 SMLDDAIDYLKTLKHQLQIMSMGRG 371
           SMLD+AI+YLK+L+ Q+Q+MSMG G
Sbjct: 360 SMLDEAIEYLKSLQLQVQMMSMGCG 384


>Medtr7g099540.2 | transcription factor | HC |
           chr7:39933891-39938353 | 20130731
          Length = 461

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 56/86 (65%), Gaps = 3/86 (3%)

Query: 289 ETEDYTVKEVQAR---DGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDK 345
           ++ED   +  +A+    G+  KR R+AE+HNLSE             L+ELIP  NK DK
Sbjct: 234 QSEDVDFESAEAKKNISGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDK 293

Query: 346 ASMLDDAIDYLKTLKHQLQIMSMGRG 371
           ASMLD+AIDYLK+L+ Q+Q+MSMG G
Sbjct: 294 ASMLDEAIDYLKSLQLQVQMMSMGCG 319


>Medtr7g099540.1 | transcription factor | HC |
           chr7:39933891-39938353 | 20130731
          Length = 467

 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 9/92 (9%)

Query: 289 ETEDYTVKEVQAR---DGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDK 345
           ++ED   +  +A+    G+  KR R+AE+HNLSE             L+ELIP  NK DK
Sbjct: 234 QSEDVDFESAEAKKNISGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDK 293

Query: 346 ASMLDDAIDYLKTLKHQ------LQIMSMGRG 371
           ASMLD+AIDYLK+L+ Q      +Q+MSMG G
Sbjct: 294 ASMLDEAIDYLKSLQLQVQRVQLMQMMSMGCG 325


>Medtr3g449770.1 | transcription factor | HC |
           chr3:16987989-16990900 | 20130731
          Length = 511

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 4/88 (4%)

Query: 288 EETEDYTVKE-VQARDGTR---IKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKI 343
           E++ED  +K  V+ +   R    +R R+AE+HNLSE             L++LIP+ +K 
Sbjct: 289 EQSEDTELKSGVRKKTSQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKT 348

Query: 344 DKASMLDDAIDYLKTLKHQLQIMSMGRG 371
           DKASML++AI+YLK+L+ QLQ+M MG G
Sbjct: 349 DKASMLEEAIEYLKSLQLQLQVMWMGSG 376


>Medtr1g019240.1 | helix loop helix DNA-binding domain protein | HC
           | chr1:5755377-5757645 | 20130731
          Length = 267

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 42/65 (64%)

Query: 307 KRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIM 366
           KR R+AE HNLSE             L+ LIPN NK DKASMLD+AI+YLK L+ Q+Q++
Sbjct: 88  KRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQML 147

Query: 367 SMGRG 371
            +  G
Sbjct: 148 MVRNG 152


>Medtr4g131160.1 | BHLH transcription factor | HC |
           chr4:54719229-54715702 | 20130731
          Length = 400

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%)

Query: 298 VQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLK 357
            Q R   R +R ++ + H+++E             L+EL+PN NK DKASMLD+ IDY+K
Sbjct: 190 AQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 249

Query: 358 TLKHQLQIMSMGR 370
            L+ Q++++SM R
Sbjct: 250 FLQVQVKVLSMSR 262


>Medtr4g131160.2 | BHLH transcription factor | HC |
           chr4:54719229-54715448 | 20130731
          Length = 403

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%)

Query: 298 VQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLK 357
            Q R   R +R ++ + H+++E             L+EL+PN NK DKASMLD+ IDY+K
Sbjct: 193 AQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVK 252

Query: 358 TLKHQLQIMSMGR 370
            L+ Q++++SM R
Sbjct: 253 FLQVQVKVLSMSR 265


>Medtr5g017040.1 | helix loop helix DNA-binding domain protein | HC
           | chr5:6175718-6178846 | 20130731
          Length = 344

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%)

Query: 313 EIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLKHQLQIMSMGRG 371
           E+HNLSE             L+ LIPN NK DKASMLD+AI+YLK L+ Q+Q++S+  G
Sbjct: 114 EVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSLRNG 172


>Medtr1g080890.1 | transcription factor UNE12-like protein | HC |
           chr1:36000358-35993128 | 20130731
          Length = 355

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 44/70 (62%)

Query: 301 RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLK 360
           R   R +R ++ + H+++E             L+EL+P+ NK DKA+MLD+ +DY+K L+
Sbjct: 190 RPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDKAAMLDEIVDYVKFLR 249

Query: 361 HQLQIMSMGR 370
            Q++++SM R
Sbjct: 250 LQVKVLSMSR 259


>Medtr1g070870.2 | basic helix loop helix protein BHLH4 | HC |
           chr1:31384448-31380418 | 20130731
          Length = 285

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%)

Query: 301 RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLK 360
           R   R +R ++ + H+++E             L+EL+P+ NK D+A+MLD+ +DY+K L+
Sbjct: 120 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLR 179

Query: 361 HQLQIMSMGR 370
            Q++++SM R
Sbjct: 180 LQVKVLSMSR 189


>Medtr1g070870.1 | basic helix loop helix protein BHLH4 | HC |
           chr1:31384531-31380237 | 20130731
          Length = 282

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 44/70 (62%)

Query: 301 RDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASMLDDAIDYLKTLK 360
           R   R +R ++ + H+++E             L+EL+P+ NK D+A+MLD+ +DY+K L+
Sbjct: 117 RPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLR 176

Query: 361 HQLQIMSMGR 370
            Q++++SM R
Sbjct: 177 LQVKVLSMSR 186


>Medtr1g084980.2 | phytochrome-interacting factor 3.1 | HC |
           chr1:37932621-37935547 | 20130731
          Length = 555

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 237 AKGKAKNDNLCNERAIASSSVCS----IEASYNPNFGSRKHXXXXXXXXXXXXXXEETED 292
           AKG A  D    E A+ASSSVCS       S +PN   R                E+ ED
Sbjct: 392 AKGHAAADKGM-EVAVASSSVCSGNGADRGSDDPN---RDLKRKSRDTEDSECHSEDVED 447

Query: 293 YTV---KEVQARDGTRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKIDKASML 349
            +V   K    R     KR R+AE+HNLSE             L+ELIPNCNK+   S  
Sbjct: 448 ESVGVKKGAAGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKV---SFF 504

Query: 350 DDAIDYLKTLKHQLQIMS 367
                 L+ LK+ +++ +
Sbjct: 505 PSDFALLRYLKNCIKLWT 522


>Medtr3g116770.1 | BHLH transcription factor | HC |
           chr3:54614928-54618490 | 20130731
          Length = 397

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 291 EDYTVKEVQARDGTRIKRRR--SAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKI-DKAS 347
           E+  V +VQ  D   ++ RR  + + H+L+E             L++L+P CNKI  KA 
Sbjct: 176 ENSKVSDVQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAG 235

Query: 348 MLDDAIDYLKTLKHQLQIMSM 368
           MLD+ I+Y+++L+ Q++ +SM
Sbjct: 236 MLDEIINYVQSLQKQVEFLSM 256


>Medtr3g116770.2 | BHLH transcription factor | HC |
           chr3:54614928-54618493 | 20130731
          Length = 398

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 291 EDYTVKEVQARDGTRIKRRR--SAEIHNLSEXXXXXXXXXXXXTLKELIPNCNKI-DKAS 347
           E+  V +VQ  D   ++ RR  + + H+L+E             L++L+P CNKI  KA 
Sbjct: 176 ENSKVSDVQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAG 235

Query: 348 MLDDAIDYLKTLKHQLQIMSM 368
           MLD+ I+Y+++L+ Q++ +SM
Sbjct: 236 MLDEIINYVQSLQKQVEFLSM 256


>Medtr5g037250.1 | transcription factor | HC |
           chr5:16271354-16268287 | 20130731
          Length = 239

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 304 TRIKRRRSAEIHNLSEXXXXXXXXXXXXTLKELIPNCNK-IDKASMLDDAIDYLKTLKHQ 362
            R +R ++ + H+L+E            TL++L+P CNK I KA +LD+ I+Y+++L HQ
Sbjct: 112 VRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQ 171

Query: 363 LQIMSM 368
           ++ +SM
Sbjct: 172 VEFLSM 177