Miyakogusa Predicted Gene

Lj1g3v4792970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4792970.1 tr|D5FFG4|D5FFG4_MEDTR MYB transcription factor
MYB2 OS=Medicago truncatula PE=2
SV=1,45.89,1e-18,seg,NULL,gene.g37426.t1.1
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g107230.1 | MYB-like transcription factor family protein |...    79   2e-15

>Medtr4g107230.1 | MYB-like transcription factor family protein | HC
           | chr4:44299914-44302294 | 20130731
          Length = 287

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/146 (39%), Positives = 76/146 (52%), Gaps = 18/146 (12%)

Query: 1   MEEEQIQHQDNMSHSCPIYPATATETPESSNRNGYPMMPMYSMAVGSGVNSVLARNQMEK 60
           MEEEQ+++QD++S   P+ PA     PE+   NG+P M +Y +    GVN       ME+
Sbjct: 158 MEEEQVKNQDSVSQLQPLCPAV----PETRKINGFPFMSVYEL----GVNE---STPMEE 206

Query: 61  LTLGQENVEQN-EVSKLACTIP-AVPDHKAXXXXXXXXXXXXXXXXPPTXXXXXXXXXDQ 118
           LTLGQ NV+ N + + L   IP  V D KA                PPT         DQ
Sbjct: 207 LTLGQGNVKHNFQTNSLFNPIPFVVSDPKASIVSDITSSSSID---PPTLSLGLSFSSDQ 263

Query: 119 RQKSPRHTPLHAVPCFNNEDSIITVA 144
           R+ S  H  LHA+PCF N D+II+VA
Sbjct: 264 RKTSSTH--LHAMPCFKNGDNIISVA 287