Miyakogusa Predicted Gene

Lj1g3v4763800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4763800.1 Non Characterized Hit- tr|I3SG74|I3SG74_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.53,0,S7_S5_E_A: ribosomal protein S7,Ribosomal protein S5/S7,
eukaryotic/archaeal; no description,Ribosom,CUFF.33171.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054310.1 | 40S ribosomal protein S5-2 | HC | chr1:2338111...   379   e-106
Medtr7g107380.1 | 40S ribosomal protein S5-2 | HC | chr7:4380805...   377   e-105
Medtr0515s0010.1 | ribosomal protein S7p/S5e | HC | scaffold0515...   145   4e-35
Medtr0306s0010.1 | ribosomal protein S7p/S5e | HC | scaffold0306...   145   4e-35
Medtr3g035660.1 | NAD(P)H-quinone oxidoreductase subunit 2 | HC ...    64   7e-11
Medtr0002s0300.1 | 30S ribosomal protein S7 | HC | scaffold0002:...    50   1e-06

>Medtr1g054310.1 | 40S ribosomal protein S5-2 | HC |
           chr1:23381114-23384634 | 20130731
          Length = 239

 Score =  379 bits (974), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 185/202 (91%), Positives = 192/202 (95%), Gaps = 1/202 (0%)

Query: 3   ETVAVEVDPSQIEVKLFNRWSYDDVQVTDISLADYVGVVASKHATYVPHTAGRYSVKRFR 62
           E VAV  DP+ IEVKLFNRWS+DDVQ+TD+SL DY+G   SKHATYVPHTAGRYS KRFR
Sbjct: 39  EPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGA-RSKHATYVPHTAGRYSKKRFR 97

Query: 63  KAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPR 122
           KAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAV+NSGPR
Sbjct: 98  KAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPR 157

Query: 123 EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAK 182
           EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAK
Sbjct: 158 EDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAK 217

Query: 183 GSSNSYAIKKKDEIERVAKANR 204
           GSSNSYAIKKKDEIERVAKANR
Sbjct: 218 GSSNSYAIKKKDEIERVAKANR 239


>Medtr7g107380.1 | 40S ribosomal protein S5-2 | HC |
           chr7:43808050-43812723 | 20130731
          Length = 206

 Score =  377 bits (967), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/207 (88%), Positives = 194/207 (93%), Gaps = 4/207 (1%)

Query: 1   MAE---TVAVEVDPSQIEVKLFNRWSYDDVQVTDISLADYVGVVASKHATYVPHTAGRYS 57
           MAE    + VEVDP+  EVKLFN+WS+DD+Q+TD+SL DY+G   SKHATYVPHTAGRYS
Sbjct: 1   MAEETVVIPVEVDPNLNEVKLFNQWSFDDLQITDLSLGDYIGA-RSKHATYVPHTAGRYS 59

Query: 58  VKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVI 117
            KRFRKAQCPI+ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAV+
Sbjct: 60  KKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVV 119

Query: 118 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 177
           NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL
Sbjct: 120 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADEL 179

Query: 178 INAAKGSSNSYAIKKKDEIERVAKANR 204
           INAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 180 INAAKGSSNSYAIKKKDEIERVAKANR 206


>Medtr0515s0010.1 | ribosomal protein S7p/S5e | HC |
           scaffold0515:3884-3334 | 20130731
          Length = 86

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)

Query: 43  SKHATYVPHTAGRYSVKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHL 102
           SKHATY+PHT GRYS K+FRKAQCPI+ERLTNSLMMHGRNNGKKL  VRIIKHAMEIIHL
Sbjct: 5   SKHATYIPHTVGRYSKKQFRKAQCPIVERLTNSLMMHGRNNGKKLRVVRIIKHAMEIIHL 64

Query: 103 LTDLNPIQVIVDAVIN 118
           LTD NPIQVI+DAV+N
Sbjct: 65  LTDHNPIQVILDAVVN 80


>Medtr0306s0010.1 | ribosomal protein S7p/S5e | HC |
           scaffold0306:3884-3334 | 20130731
          Length = 86

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)

Query: 43  SKHATYVPHTAGRYSVKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHL 102
           SKHATY+PHT GRYS K+FRKAQCPI+ERLTNSLMMHGRNNGKKL  VRIIKHAMEIIHL
Sbjct: 5   SKHATYIPHTVGRYSKKQFRKAQCPIVERLTNSLMMHGRNNGKKLRVVRIIKHAMEIIHL 64

Query: 103 LTDLNPIQVIVDAVIN 118
           LTD NPIQVI+DAV+N
Sbjct: 65  LTDHNPIQVILDAVVN 80


>Medtr3g035660.1 | NAD(P)H-quinone oxidoreductase subunit 2 | HC |
           chr3:13225940-13230352 | 20130731
          Length = 871

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 20/173 (11%)

Query: 36  DYVGVVASKHATYVPHTAGRYSVKRFRKAQCPIIERLTNSLMMHGRNNGKKLMAVRIIKH 95
           D VGV   +  T    TA    + R R     ++  L N +M HG    KK +A +II  
Sbjct: 152 DAVGVKDRQQGTAEKKTAKSDPIYRNR-----LVNMLVNRIMKHG----KKSLAYQIIYR 202

Query: 96  AMEIIHLLTDLNPIQVIVDAVINSGP----REDATRIGSAGVVRRQAVDISPLRRVNQAI 151
           AM+ I   T  NP+ V+  A+    P    +    R+  +G  ++  V+I   +    AI
Sbjct: 203 AMKRIQQKTKTNPLYVLRQAIRGVTPDIAVKTKTRRV--SGSNKKVPVEIGSTQGKALAI 260

Query: 152 YLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 204
             L   +R+   RN   +A  L+ EL++AAKGS +  AI+KK E  R+A+ANR
Sbjct: 261 RWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD--AIRKKQETHRMAEANR 308


>Medtr0002s0300.1 | 30S ribosomal protein S7 | HC |
           scaffold0002:191647-192045 | 20130731
          Length = 132

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 84  GKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPRED-ATRIGSAGVVRRQAVDIS 142
           GKK +A +I+  A++ I   T+ NP+ V+  A+    P     TR    G  R+  ++I 
Sbjct: 10  GKKSLAYQILYRAVKKIQQKTETNPLLVLRQAIRRVTPNIGVKTRRNKKGSTRKVPIEIG 69

Query: 143 PLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 202
             +    AI  L   +++   RN   +A  L+ EL++AAKGS    AI+KK+   R+A+A
Sbjct: 70  SKQGRALAIRWLLEASQKRPGRN---MAFKLSSELVDAAKGSGG--AIRKKEATHRMAEA 124

Query: 203 NR 204
           NR
Sbjct: 125 NR 126