Miyakogusa Predicted Gene

Lj1g3v4717440.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4717440.2 tr|G7KQW9|G7KQW9_MEDTR Signal recognition
particle 54 kDa protein OS=Medicago truncatula
GN=MTR_7g10,92.5,0,SRP54,Signal recognition particle, SRP54 subunit,
GTPase domain; SIGNAL RECOGNITION PARTICLE PROTEIN,CUFF.33101.2
         (240 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g104890.1 | signal recognition particle 54 kDa protein | H...   430   e-121
Medtr7g104890.2 | signal recognition particle 54 kDa protein | H...   429   e-120
Medtr4g010050.1 | signal recognition particle 54 kDa protein | H...   127   1e-29
Medtr2g104050.1 | signal recognition particle 54 kDa protein | H...   119   3e-27
Medtr8g032480.1 | signal recognition particle protein | HC | chr...    94   1e-19
Medtr8g032340.1 | signal recognition particle receptor FtsY | HC...    92   3e-19
Medtr4g130770.1 | signal recognition particle receptor protein, ...    85   6e-17
Medtr7g085470.1 | signal recognition particle protein | LC | chr...    76   3e-14

>Medtr7g104890.1 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 553

 Score =  430 bits (1106), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/240 (89%), Positives = 225/240 (93%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTA 60
           MLVAGD+YRPAAIDQLTILGKQV VPVYTAGTDVKPS+IA+QG EEA           TA
Sbjct: 198 MLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTA 257

Query: 61  GRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDG 120
           GRLQIDKAMMDELK+VK+ LNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDG
Sbjct: 258 GRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDG 317

Query: 121 DSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ 180
           DSRGGAALSVKEVSGKPIKLVGRGERM+DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ
Sbjct: 318 DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ 377

Query: 181 QEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIREAEKNLK 240
           QEDAE LQ+KIMSAKFDFNDFLKQTRAVAQMGSVSRV+GMIPGM+KVTPAQIREAE+NL+
Sbjct: 378 QEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLE 437


>Medtr7g104890.2 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 420

 Score =  429 bits (1102), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/240 (89%), Positives = 225/240 (93%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTA 60
           MLVAGD+YRPAAIDQLTILGKQV VPVYTAGTDVKPS+IA+QG EEA           TA
Sbjct: 65  MLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTA 124

Query: 61  GRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDG 120
           GRLQIDKAMMDELK+VK+ LNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDG
Sbjct: 125 GRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDG 184

Query: 121 DSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ 180
           DSRGGAALSVKEVSGKPIKLVGRGERM+DLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ
Sbjct: 185 DSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQ 244

Query: 181 QEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIREAEKNLK 240
           QEDAE LQ+KIMSAKFDFNDFLKQTRAVAQMGSVSRV+GMIPGM+KVTPAQIREAE+NL+
Sbjct: 245 QEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLE 304


>Medtr4g010050.1 | signal recognition particle 54 kDa protein | HC |
           chr4:2207891-2201607 | 20130731
          Length = 496

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 112/224 (50%)

Query: 2   LVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTAG 61
           LV  D +R  A DQL     +  +P Y +  +  P +IA +G+E             T+G
Sbjct: 134 LVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSG 193

Query: 62  RLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGD 121
           R + + A+ +E+++V ++  P  V+ V+D+  GQ A      F   + +   I+TK+DG 
Sbjct: 194 RHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGH 253

Query: 122 SRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ 181
           ++GG ALS    +  P+  +G GE MD+ E F       R+LG GD+  F+ K  EV+  
Sbjct: 254 AKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGQGDLSGFMNKIHEVVPM 313

Query: 182 EDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMS 225
           +   +L  K+    F      +Q + + +MG +S V  M+PG S
Sbjct: 314 DQQPELLNKLQEGTFTLRIMYEQFQNILKMGPMSEVFSMLPGFS 357


>Medtr2g104050.1 | signal recognition particle 54 kDa protein | HC |
           chr2:44822528-44828469 | 20130731
          Length = 470

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 115/239 (48%)

Query: 2   LVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTAG 61
           LV  D +R  A DQL     +  +P Y +  +  P +IA +G+E             T+G
Sbjct: 134 LVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKEEDHDLIIVDTSG 193

Query: 62  RLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGD 121
           R + + ++ +E++++ ++  P  V+ V+D+  GQ A      F   + +   I+TK+DG 
Sbjct: 194 RHKQEASLFEEMRQLSEATKPDLVIFVMDSSIGQAAFNQAQAFKQIVAVGAVIITKMDGH 253

Query: 122 SRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ 181
           ++GG +LS    +  P+  +G GE MD  E F       R+LGMGD+   ++K   V+  
Sbjct: 254 AKGGGSLSAVAATKSPVIFIGTGEHMDQFEVFEVQPFVSRLLGMGDLSGLIDKIHGVVPM 313

Query: 182 EDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIREAEKNLK 240
           +    L +K+    F      +Q +   +MG +  ++ MIPG S     Q  E E + K
Sbjct: 314 DQQADLVQKLSKGNFTLRIMYEQFQNALKMGPMGELVSMIPGFSSELIPQGHENESSAK 372


>Medtr8g032480.1 | signal recognition particle protein | HC |
           chr8:12458856-12456172 | 20130731
          Length = 196

 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTD-VKPSEIARQGLEE---AXXXXXXXXX 56
           +L AGD +R AA DQL I  ++ G  +  A ++  K S +  Q ++    A         
Sbjct: 24  LLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRRKRARLYISIGVH 83

Query: 57  XXTAGRLQIDKAMMDELKEVKKSLN------PTEVLLVVDAMTGQEAAALVTTFNLEIGI 110
              +G L  +  +M+EL   KK++       P E+LLV+D  TG         FN  +G+
Sbjct: 84  VIFSG-LHTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGV 142

Query: 111 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPF 153
           TG ILTKLDG +RGG  +SV +  G P+K VG GE ++DL+PF
Sbjct: 143 TGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 185


>Medtr8g032340.1 | signal recognition particle receptor FtsY | HC |
           chr8:12218070-12210399 | 20130731
          Length = 371

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 11/163 (6%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTD-VKPSEIARQGLEE---AXXXXXXXXX 56
           +L AGD +R AA DQL I  ++ G  +  A ++  K S +  Q ++    A         
Sbjct: 199 LLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRRKRARLYISIGVH 258

Query: 57  XXTAGRLQIDKAMMDELKEVKKSLN------PTEVLLVVDAMTGQEAAALVTTFNLEIGI 110
              +G L  +  +M+EL   KK++       P E+LLV+D  TG         FN  +G+
Sbjct: 259 VIFSG-LHTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGV 317

Query: 111 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPF 153
           TG ILTKLDG +RGG  +SV +  G P+K VG GE ++DL+PF
Sbjct: 318 TGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPF 360


>Medtr4g130770.1 | signal recognition particle receptor protein,
           putative | HC | chr4:54489810-54494349 | 20130731
          Length = 631

 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 11/162 (6%)

Query: 1   MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXTA 60
           M+ A D +R  A++QL    +++ +P++  G +  P+ +A++ ++EA           TA
Sbjct: 457 MMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTA 516

Query: 61  GRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIG----------I 110
           GR+Q ++ +M  L ++    NP  VL V +A+ G +A   ++ FN ++           I
Sbjct: 517 GRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLI 576

Query: 111 TGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMDDLE 151
            G +LTK D  D + GAALS+  +SG P+  VG G+   DL+
Sbjct: 577 DGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLK 618


>Medtr7g085470.1 | signal recognition particle protein | LC |
           chr7:33117310-33115264 | 20130731
          Length = 321

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 9/183 (4%)

Query: 2   LVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAX-XXXXXXXXXXTA 60
           LV  D  R  A DQL  +  +  +P Y     V   +  R+   +             + 
Sbjct: 112 LVCTDTLRNGAFDQLKQIYAETNIPCYGR---VGYCQNCRERCGQMQGGNCDLIIVDVSG 168

Query: 61  GRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAAL-----VTTFNLEIGITGAIL 115
           G  Q + A+++E+ +V K+  P  V+LV+D   GQ A         T F   + I   I+
Sbjct: 169 GHKQEEDALIEEIHQVSKATKPDLVILVIDGNIGQHAFDHRSLKQATAFTQSVDIGAVIV 228

Query: 116 TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKA 175
           +K+DG + GG +LS    +   +  +G GE MD+ E F        +LGM D   F+++ 
Sbjct: 229 SKMDGYAMGGGSLSAVAATKSSVIFIGTGEHMDEFEVFEVKPFVSSLLGMDDWYEFIDRV 288

Query: 176 QEV 178
            EV
Sbjct: 289 YEV 291