Miyakogusa Predicted Gene

Lj1g3v4528610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4528610.1 Non Characterized Hit- tr|Q60B25|Q60B25_METCA
Putative uncharacterized protein OS=Methylococcus
caps,50,4e-19,Cupin_3,Domain of unknown function DUF861, cupin-3;
RmlC-like cupins,RmlC-like cupin domain; no desc,CUFF.32582.1
         (111 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g069370.1 | RmlC-like cupins superfamily protein | HC | ch...   192   6e-50
Medtr7g099200.1 | RmlC-like cupins superfamily protein | HC | ch...   187   3e-48
Medtr1g076840.1 | RmlC-like cupins superfamily protein | HC | ch...   127   2e-30
Medtr6g060170.2 | RmlC-like cupins superfamily protein | HC | ch...   126   4e-30
Medtr6g060170.1 | RmlC-like cupins superfamily protein | HC | ch...   126   4e-30
Medtr6g059920.1 | RmlC-like cupins superfamily protein | HC | ch...    88   1e-18
Medtr5g005820.1 | RmlC-like cupins superfamily protein | HC | ch...    83   6e-17
Medtr6g060000.1 | ethanolamine utilization protein EutQ | HC | c...    64   3e-11
Medtr1g086000.1 | plastid transcriptionally active protein | HC ...    54   4e-08
Medtr6g060090.1 | RmlC-like cupins superfamily protein | HC | ch...    53   8e-08
Medtr6g060030.1 | RmlC-like cupins superfamily protein, putative...    52   2e-07

>Medtr1g069370.1 | RmlC-like cupins superfamily protein | HC |
           chr1:29986728-29985854 | 20130731
          Length = 103

 Score =  192 bits (488), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 91/98 (92%), Positives = 95/98 (96%)

Query: 3   SSDSNSNLRISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYP 62
           +SDSNSNLRI+IE NPS+ RLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAY 
Sbjct: 2   ASDSNSNLRITIESNPSEPRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYT 61

Query: 63  KGSSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 100
           KGSSEFVEFGAGDLVTIPKGLSCTWDVS+AVDKYYKFE
Sbjct: 62  KGSSEFVEFGAGDLVTIPKGLSCTWDVSIAVDKYYKFE 99


>Medtr7g099200.1 | RmlC-like cupins superfamily protein | HC |
           chr7:39755766-39756379 | 20130731
          Length = 107

 Score =  187 bits (474), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/93 (95%), Positives = 92/93 (98%)

Query: 8   SNLRISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSE 67
           S+LRI+IERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAY KGSS+
Sbjct: 3   SDLRITIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYTKGSSD 62

Query: 68  FVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 100
           FVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE
Sbjct: 63  FVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 95


>Medtr1g076840.1 | RmlC-like cupins superfamily protein | HC |
           chr1:34299918-34301020 | 20130731
          Length = 132

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 56/91 (61%), Positives = 68/91 (74%)

Query: 10  LRISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFV 69
           L I IE NP +S+L +L ++ WPKWGC P  +   +DA ETCYLL+GKVK  P G++E V
Sbjct: 42  LGIKIESNPPESKLTQLGVRQWPKWGCPPSNFPWTYDATETCYLLEGKVKVTPSGANEAV 101

Query: 70  EFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 100
           E  AGDLV  PKG+SCTWDVSV VDK+YKFE
Sbjct: 102 EISAGDLVVFPKGMSCTWDVSVGVDKHYKFE 132


>Medtr6g060170.2 | RmlC-like cupins superfamily protein | HC |
           chr6:20661566-20657697 | 20130731
          Length = 98

 Score =  126 bits (317), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 74/97 (76%)

Query: 4   SDSNSNLRISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPK 63
           S+    L I IE+NPS+ +L +L ++ W KWGC P K+   +D++ETCYLL+G+VK  P 
Sbjct: 2   SNVTEKLGIKIEKNPSEEKLTQLGVRQWSKWGCPPSKFPWTYDSKETCYLLEGEVKVTPN 61

Query: 64  GSSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 100
           G++E VEFGAGDLV  PKG+SCTWDVSVAV+K+Y FE
Sbjct: 62  GANESVEFGAGDLVVFPKGMSCTWDVSVAVNKHYLFE 98


>Medtr6g060170.1 | RmlC-like cupins superfamily protein | HC |
           chr6:20661461-20657714 | 20130731
          Length = 98

 Score =  126 bits (317), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 74/97 (76%)

Query: 4   SDSNSNLRISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPK 63
           S+    L I IE+NPS+ +L +L ++ W KWGC P K+   +D++ETCYLL+G+VK  P 
Sbjct: 2   SNVTEKLGIKIEKNPSEEKLTQLGVRQWSKWGCPPSKFPWTYDSKETCYLLEGEVKVTPN 61

Query: 64  GSSEFVEFGAGDLVTIPKGLSCTWDVSVAVDKYYKFE 100
           G++E VEFGAGDLV  PKG+SCTWDVSVAV+K+Y FE
Sbjct: 62  GANESVEFGAGDLVVFPKGMSCTWDVSVAVNKHYLFE 98


>Medtr6g059920.1 | RmlC-like cupins superfamily protein | HC |
           chr6:20577094-20574039 | 20130731
          Length = 130

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 54/86 (62%)

Query: 12  ISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEF 71
           + IE+NPSQS+L EL +  WPKW   P K    F+ EET Y+L+GKV    + S    E 
Sbjct: 40  VKIEKNPSQSKLIELGVSTWPKWEGGPLKIPWSFEEEETMYILEGKVNVTVEESIGSFEI 99

Query: 72  GAGDLVTIPKGLSCTWDVSVAVDKYY 97
           G G+LV  PKG++ TWDV+  V K+Y
Sbjct: 100 GGGNLVVFPKGMNITWDVTEPVKKHY 125


>Medtr5g005820.1 | RmlC-like cupins superfamily protein | HC |
          chr5:637106-638673 | 20130731
          Length = 99

 Score = 82.8 bits (203), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 53/85 (62%)

Query: 12 ISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEF 71
          + IE+NPS+S+L EL++  WPKW   P K    F  EET YL++GKVK   +      E 
Sbjct: 9  VKIEKNPSKSKLIELSVSTWPKWEGGPLKIPRSFKEEETMYLVEGKVKVTVEEKIGSFEI 68

Query: 72 GAGDLVTIPKGLSCTWDVSVAVDKY 96
          G GDLV  PKG++ TW+++  V K+
Sbjct: 69 GGGDLVVFPKGMTITWEITEPVKKH 93


>Medtr6g060000.1 | ethanolamine utilization protein EutQ | HC |
          chr6:20601533-20600860 | 20130731
          Length = 65

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 39 GKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGAGDLVTIPKGL 83
          GK+   +D++ETCYLL+GKVK  P G++E VEFGAGDLV  PKG+
Sbjct: 17 GKFPWTYDSKETCYLLEGKVKVTPNGANELVEFGAGDLVVFPKGM 61


>Medtr1g086000.1 | plastid transcriptionally active protein | HC |
           chr1:38480907-38478579 | 20130731
          Length = 143

 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%)

Query: 12  ISIERNPSQSRLAELNIKCWPKWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEF 71
           + +ER  S  +LA+L +  W  W     +    +  ++  Y+ +G+V+  P+GS  F++F
Sbjct: 49  VKVERKVSPEKLAQLEVSRWSVWKTGKSRLPWDWQVDQLVYIEEGEVRVVPEGSKRFMQF 108

Query: 72  GAGDLVTIPK 81
            AGDL+  PK
Sbjct: 109 VAGDLIRYPK 118


>Medtr6g060090.1 | RmlC-like cupins superfamily protein | HC |
          chr6:20629827-20628722 | 20130731
          Length = 56

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 33 KWGCSPGKYQLKFDAEETCYLLKGKVKAYPKGSSEFVEFGAGDLVTIPKG 82
          KWGC P K+   +D + TCYLL+GKVK  P  +S  VEF  GDL+   KG
Sbjct: 9  KWGCPPNKFPWTYDFKVTCYLLEGKVKVTPNSNS--VEFSVGDLLCFLKG 56


>Medtr6g060030.1 | RmlC-like cupins superfamily protein, putative |
           HC | chr6:20612139-20611457 | 20130731
          Length = 64

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 32/57 (56%), Gaps = 18/57 (31%)

Query: 62  PKGSSEFVEFGAGDLVTIPKGLSCT------------------WDVSVAVDKYYKFE 100
           P G++E VEFGAGDLV  PKG+SCT                  WDVSV V+K Y FE
Sbjct: 8   PNGANESVEFGAGDLVVFPKGMSCTWDQGRSYEFGGSALSDPAWDVSVVVNKRYLFE 64