Miyakogusa Predicted Gene
- Lj1g3v4171210.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4171210.3 Non Characterized Hit- tr|I1HX02|I1HX02_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,39.29,3e-18,coiled-coil,NULL; seg,NULL; FAMILY NOT NAMED,NULL;
A_thal_3526,Conserved hypothetical protein CHP015,CUFF.32058.3
(414 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g051245.1 | hypothetical protein | HC | chr1:20040591-2003... 206 5e-53
Medtr7g090270.1 | hypothetical protein | LC | chr7:35443359-3544... 169 3e-42
Medtr7g090290.1 | hypothetical protein | LC | chr7:35450577-3544... 133 4e-31
Medtr8g027760.1 | hypothetical protein | HC | chr8:10082663-1007... 132 5e-31
Medtr8g027760.2 | hypothetical protein | HC | chr8:10082663-1007... 132 6e-31
Medtr3g023770.1 | plant-specific domain TIGR01589 family protein... 113 3e-25
Medtr6g007730.1 | hypothetical protein | LC | chr6:1865386-18664... 82 7e-16
Medtr4g124580.1 | hypothetical protein | HC | chr4:51576095-5157... 77 3e-14
Medtr7g022840.1 | hypothetical protein | HC | chr7:7409769-74073... 63 5e-10
Medtr0001s0190.1 | hypothetical protein | HC | scaffold0001:6421... 62 2e-09
Medtr7g100335.2 | hypothetical protein | HC | chr7:40266201-4026... 60 3e-09
Medtr7g100335.1 | hypothetical protein | HC | chr7:40266201-4026... 60 3e-09
Medtr1g115490.1 | hypothetical protein | HC | chr1:52183095-5218... 57 4e-08
>Medtr1g051245.1 | hypothetical protein | HC |
chr1:20040591-20034586 | 20130731
Length = 300
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/204 (55%), Positives = 145/204 (71%), Gaps = 4/204 (1%)
Query: 195 TAVSSLPNSNGSHIPTRHENPTCYSAERPQPDLMSENMQHSVNSRLSNTFNNGGPSPHTR 254
TAV LPNSNGSHIP +NP+CY++E+ + ENM+H ++S L + FNNGG S +TR
Sbjct: 96 TAVGLLPNSNGSHIPPLPQNPSCYASEQASAAVKPENMRHGLDSTLHDVFNNGGSSLNTR 155
Query: 255 MHTVVDMSSHGIGINGSPSMLSAQNSNLGMMQGINGGMIKLEPGYSDC-SYMFSTGGNV- 312
+ + MS+ G I+ PSMLS+QNS+LG++QGINGGMIK EPGYS Y+F G V
Sbjct: 156 VRDLAQMSARGNRISSPPSMLSSQNSSLGLIQGINGGMIKSEPGYSGSPPYIFGPDGTVL 215
Query: 313 PTRPNTADASVTSFTNVAPNAHAVNDAVLETD-SSFGFLGQIPRNFSLSDLTADFSLSSD 371
P DA+VTSF +V N+H++N A+L+ D SSFG LGQI RN SLSDLTADFS SSD
Sbjct: 216 EACPTIGDAAVTSFNSVDSNSHSMNGALLDPDISSFGVLGQISRNLSLSDLTADFSQSSD 275
Query: 372 ILDSYSRSPFLPTDN-NFLEKVEQ 394
I++SY R P+L T N NFL+ EQ
Sbjct: 276 IMESYPRCPYLGTTNENFLQNGEQ 299
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/114 (64%), Positives = 87/114 (76%), Gaps = 5/114 (4%)
Query: 10 GPVRQVSCQDIQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEF 69
G VR+VS +DIQLVQNLIERCLQLYM+ +EVV+ L+ QAKIEP FTELVWQKLEEEN+EF
Sbjct: 4 GSVRRVSREDIQLVQNLIERCLQLYMNPKEVVETLLAQAKIEPGFTELVWQKLEEENQEF 63
Query: 70 FRAYYTRLMLKQQIVEFNRLLDQQLHLMHSNS-----LSASNGSHNPAVASLPA 118
F+AYY RL+LK+QI EFNRLL +Q L S L SNGSH P + P+
Sbjct: 64 FKAYYLRLLLKEQITEFNRLLKEQAELSQLQSTAVGLLPNSNGSHIPPLPQNPS 117
>Medtr7g090270.1 | hypothetical protein | LC |
chr7:35443359-35440239 | 20130731
Length = 355
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 135/402 (33%), Positives = 188/402 (46%), Gaps = 77/402 (19%)
Query: 15 VSCQDIQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEFFRAYY 74
++ QD+ VQ+LIERC+ LYM+ +E+V L +AKIEP FT++VWQKL E+N EFF+AYY
Sbjct: 5 ITRQDVDQVQDLIERCILLYMTPKEIVSTLHEKAKIEPKFTKIVWQKLNEQNPEFFKAYY 64
Query: 75 TRLMLKQQIVEFNRLLDQQLHLMHSNSLSASNGSHNPAVASLPASNGXXXXXXXXXXXXX 134
TRL LKQQI +FN LL++Q LM S +
Sbjct: 65 TRLALKQQIEKFNELLEKQKELMDSQT--------------------------------- 91
Query: 135 XXXXPTIASLPASNGSQIPAVSSLPNSNGSHITAVSSLPISNGSH--IPRIPSLLNSNGS 192
+ASLP SN S IPA+ P + + L N H + L N+ GS
Sbjct: 92 -----NVASLPNSNESHIPAIPENPAYSHVSVQTPEGLNSKNLQHGVVSNFSDLFNNKGS 146
Query: 193 HITAVS--------SLPNSNGSHIPTRHENPTCYSAERPQ-----PDLMSENMQHSVNSR 239
V S+ + S++ + + +P P + + + +S
Sbjct: 147 SFGMVDTSAHGDIPSMTFTQNSNMGMQQGVNGGMTISKPDNSSFSPHMFGADGKVGGSSA 206
Query: 240 LS--NTFNNGGPSPHTRMHTVVDMSSHGIGINGSPSMLSAQNSNLGMMQGINGGMIKLEP 297
+ N N GG S DM G PSM N+N+G+ QGINGGM +P
Sbjct: 207 MPFPNFLNRGGSS-----FGKADMFVQG----DIPSMAYTHNTNMGVQQGINGGMNTSKP 257
Query: 298 GYSDCS-YMFSTGGNVPTRPNTADASVTSFTNVAPNAHAVNDAVLETDSSFGFLGQIPRN 356
GYS S +MF GNV +AS TSFTN ++H +AVL +S PR
Sbjct: 258 GYSSYSPHMFGAHGNV------VNASATSFTNAESSSHHGIEAVLGHPTSI-----FPRK 306
Query: 357 FSLSDLTADFSLSSDILDSYSRSPFLPT-DNNFLEKVEQDNN 397
FS +++ F + + LD + SPF+ DNN + EQ NN
Sbjct: 307 FSFPNVSDLFPMGFETLDKFYGSPFINLGDNNSPQTREQGNN 348
>Medtr7g090290.1 | hypothetical protein | LC |
chr7:35450577-35448376 | 20130731
Length = 421
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 112/304 (36%), Positives = 146/304 (48%), Gaps = 53/304 (17%)
Query: 31 LQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEFFRAYYTRLMLKQQIVEFNRLL 90
+Q YMS +EV + L+ +AKIEP FTELVWQ+LEE+N EFF+AYYTRL LK+QI EFN+L+
Sbjct: 1 MQSYMSPKEVANSLLNEAKIEPKFTELVWQRLEEQNPEFFQAYYTRLALKKQIEEFNKLM 60
Query: 91 DQQLHLMHSNSLSASNGSHNPAVASLPASNGXXXXXXXXXXXXXXXXXPTIASLPASNGS 150
+Q L+ S VASLP SNG ++SLP SNG+
Sbjct: 61 HKQKELIDS---------EQAKVASLPTSNGFHYHD--------------VSSLPTSNGT 97
Query: 151 QIPAVSSLPNSNGSHITAVSSLPISNGSH--IPRIPSLLNSNGSHITAV--------SSL 200
PA + P + L N H + LN+ GS V S++
Sbjct: 98 PTPATTENPACYYVSVQPAEGLNPKNMQHGWESNLSYELNNGGSSFGMVDVSAQGDCSTM 157
Query: 201 PNSNGSHIPTRH---ENPTCYSAERPQPDL----MSENMQHSV----NSRLSNTFNNGGP 249
S +++ + E E P + EN+ + N+ + FNNG
Sbjct: 158 HYSQNTNMGFQQGINEGIAISEPEYPSSSTRMFGIDENVLEACPIVGNTSATPIFNNGTG 217
Query: 250 SPHTRMHTVVDMSSHGIGINGSPSMLSAQNSNLGMMQGINGGMIKLEPGY-SDCSYMFST 308
SP RM VDMS+HG SM +QNSN+G QGINGGM EP Y S MF
Sbjct: 218 SPF-RM---VDMSAHG----DFSSMHYSQNSNMGFQQGINGGMAITEPEYPSSSPSMFGV 269
Query: 309 GGNV 312
NV
Sbjct: 270 DENV 273
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 13/108 (12%)
Query: 244 FNNGGPSPHTRMHTVVDMSSHGIGINGSPSMLSAQNSNLGMMQGINGGMIKLEPGYSDCS 303
++NGG S H +V+MS+HG + SM +QNSN+ + QG+NG M ++P YS
Sbjct: 289 YSNGGSSFH-----MVEMSAHGDIL----SMHHSQNSNMDLQQGVNGQMAIVQPEYSSFP 339
Query: 304 YMFSTGGN-VPTRPNTADASVTSFTNVAPNAHAVNDAVLE---TDSSF 347
+M N V T N DAS + + N+ + N+AV++ T SSF
Sbjct: 340 HMSGADRNAVETGSNVRDASAMPISGIESNSDSDNEAVMDFLNTCSSF 387
>Medtr8g027760.1 | hypothetical protein | HC |
chr8:10082663-10074903 | 20130731
Length = 363
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 13 RQVSCQDIQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEFFRA 72
++VS QDI+LVQNLIERCLQLYM++ EVV L+ +AKI+P FT LVWQKLEEEN +FFRA
Sbjct: 48 KKVSRQDIELVQNLIERCLQLYMNKDEVVKTLLNRAKIDPGFTALVWQKLEEENADFFRA 107
Query: 73 YYTRLMLKQQIVEFNRLLDQQLHLM 97
YY RL LK+QI+ FN LL+ Q HLM
Sbjct: 108 YYVRLKLKKQILLFNHLLEHQYHLM 132
>Medtr8g027760.2 | hypothetical protein | HC |
chr8:10082663-10074933 | 20130731
Length = 323
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 13 RQVSCQDIQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEFFRA 72
++VS QDI+LVQNLIERCLQLYM++ EVV L+ +AKI+P FT LVWQKLEEEN +FFRA
Sbjct: 48 KKVSRQDIELVQNLIERCLQLYMNKDEVVKTLLNRAKIDPGFTALVWQKLEEENADFFRA 107
Query: 73 YYTRLMLKQQIVEFNRLLDQQLHLM 97
YY RL LK+QI+ FN LL+ Q HLM
Sbjct: 108 YYVRLKLKKQILLFNHLLEHQYHLM 132
>Medtr3g023770.1 | plant-specific domain TIGR01589 family protein |
LC | chr3:7240047-7238739 | 20130731
Length = 139
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 78/107 (72%), Gaps = 5/107 (4%)
Query: 8 PGGPVRQVSCQDIQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENE 67
P V+ V+ +DIQ V+NLI +CL+ YMS ++VV+ L+ ++KIEP FT++VW+KLEE N
Sbjct: 18 PSESVKGVTSEDIQQVENLIGQCLRKYMSPKQVVETLLSESKIEPEFTKIVWKKLEEHNA 77
Query: 68 EFFRAYYTRLMLKQQIVEFNRLLDQQLHLMHSNSLSA-----SNGSH 109
EFF+AYYTR++LKQQI ++N LL++Q +M S SNGSH
Sbjct: 78 EFFKAYYTRVVLKQQIEQYNILLEKQKEIMDSQQNEVPLPPNSNGSH 124
>Medtr6g007730.1 | hypothetical protein | LC | chr6:1865386-1866401
| 20130731
Length = 221
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 99/185 (53%), Gaps = 27/185 (14%)
Query: 228 MSENMQHSVNSRLSNTFNNGGPSPHTRMHTVVDMSSHGIGINGSPSMLSAQNSNLGMMQG 287
+ + + H V+S LSN FNNGG S ++DMS HG I+ P + QN+N+ + QG
Sbjct: 39 IGDAILHGVDSNLSNAFNNGGSS-----SGIIDMSFHG-DISSVP--YNTQNTNMSLQQG 90
Query: 288 INGGMIKLEPGYSDCS-YMFSTGGNVP-TRPNTADASVTSFTNVAPNAHAVNDAVLE-TD 344
I+ G +P YS S MF G V PN DA VT TNV PN+ +VN A+L+ T
Sbjct: 91 ISWGANISKPRYSSSSPLMFGADGKVAGVNPNIGDAYVTPITNVEPNSRSVNGAILDHTK 150
Query: 345 SSFGFLGQIPRNFSLSDLTADFSLS---------SDILDSYSR-SPFLPTDNN----FLE 390
+S L + RNFS + ++ SL + +LD Y R PFL D++ LE
Sbjct: 151 TSSNEL--LSRNFSFPEESSHASLFLGSSSSPSLTGVLDDYPRPPPFLNFDDDNLLEILE 208
Query: 391 KVEQD 395
KVEQ+
Sbjct: 209 KVEQN 213
>Medtr4g124580.1 | hypothetical protein | HC |
chr4:51576095-51574867 | 20130731
Length = 238
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/307 (28%), Positives = 120/307 (39%), Gaps = 102/307 (33%)
Query: 57 LVWQKLEEENEEFFRAYYTRLMLKQQIVEFNRLLDQQLHLMHSNSLSASNGSHNPAVASL 116
L+ + L+ EN+ FF+ YYTRL L QQI ++N LL+ Q L S VASL
Sbjct: 3 LLIKPLKAENDAFFKDYYTRLALYQQIEQYNALLENQRQL---------TVSEQTIVASL 53
Query: 117 PASNGXXXXXXXXXXXXXXXXXPTIASLPASNGSQIPAVSSLPNSNGSHITAVSSLPISN 176
P SNG V SL NSNGSHI A+
Sbjct: 54 PISNGFHHH----------------------------VVPSLQNSNGSHIHAII------ 79
Query: 177 GSHIPRIPSLLNSNGSHITAVSSLPNSNGSHIPTRHENPTCYSAERPQPDLMSENMQHSV 236
ENPTCY + P ++ H
Sbjct: 80 ------------------------------------ENPTCYYVDVQTP----RSLNHGH 99
Query: 237 NSRLSNTFNNGGPSPHTRMHTVVDMSSHGIGINGSPSMLSAQNSNLGMMQGINGGMIKLE 296
R +N+ + + +VD+S G I+ P + +NSN+G+ Q ING ++ E
Sbjct: 100 ILRGANSSLSNVSNSGGSSFGMVDVSPRG-DISSMP--YNTRNSNMGLHQEINGWIVS-E 155
Query: 297 PGYSDCS-YMFSTGGN-VPTRPNTADASVTSFTNVAPNAHAVNDAVLETDSSFGFLGQIP 354
P YS+ S + F GN + PN S T NV PN++ VN+ +P
Sbjct: 156 PDYSNSSPHTFGIDGNIIEASPNARVVSSTPIANVEPNSNFVNEP-------------LP 202
Query: 355 RNFSLSD 361
RNFS D
Sbjct: 203 RNFSFPD 209
>Medtr7g022840.1 | hypothetical protein | HC |
chr7:7409769-7407373 | 20130731
Length = 102
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 6 GEPGGPVRQVSCQDIQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEE 65
GEP S I +VQ+LIE+CL +M+++E ++ L A I+P T VW++LE+E
Sbjct: 2 GEPSSSSSSSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANIKPVITSTVWKELEKE 61
Query: 66 NEEFFRAY 73
N+EFF AY
Sbjct: 62 NKEFFEAY 69
>Medtr0001s0190.1 | hypothetical protein | HC |
scaffold0001:64219-66906 | 20130731
Length = 102
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 16 SCQDIQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEFFRAYYT 75
S I LVQ+LIE+CL +M+++E ++ L A I P+ T VW +LE+ N+EFF AY
Sbjct: 7 SASYIHLVQHLIEKCLIFHMTKEECMEALSKHANINPTITSTVWNELEKVNKEFFEAYKM 66
Query: 76 RLMLKQQIVEFNRLLDQQLHLMHSNSLSASNGSHN 110
+ ++I+ + L M S S S+ H+
Sbjct: 67 KPKNNEEIMMSQEETTRMLQKMISASDSSKGAQHD 101
>Medtr7g100335.2 | hypothetical protein | HC |
chr7:40266201-40267763 | 20130731
Length = 88
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 20 IQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEFFRAY 73
I LV LIE C+ MS++E +D L A I+P T VW++LE+EN+EFF AY
Sbjct: 9 IHLVHRLIEECILFNMSKEECMDALSKHANIKPVITSTVWKELEKENKEFFEAY 62
>Medtr7g100335.1 | hypothetical protein | HC |
chr7:40266201-40267763 | 20130731
Length = 88
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 20 IQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEFFRAY 73
I LV LIE C+ MS++E +D L A I+P T VW++LE+EN+EFF AY
Sbjct: 9 IHLVHRLIEECILFNMSKEECMDALSKHANIKPVITSTVWKELEKENKEFFEAY 62
>Medtr1g115490.1 | hypothetical protein | HC |
chr1:52183095-52185515 | 20130731
Length = 101
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 20 IQLVQNLIERCLQLYMSRQEVVDKLVCQAKIEPSFTELVWQKLEEENEEFFRAY 73
I LVQ+LIE+CL +M+++E ++ L A I P T VW +LE+ N+EFF Y
Sbjct: 11 IHLVQHLIEKCLIFHMTKEECMEALSKHANINPIITSTVWNELEKVNKEFFEPY 64