Miyakogusa Predicted Gene
- Lj1g3v3981460.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3981460.1 Non Characterized Hit- tr|K3YRK4|K3YRK4_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si016898,25.33,7e-18,GD2B,NULL; CTL TRANSPORTER,Choline
transporter-like; Choline_transpo,Choline transporter-like;
seg,N,CUFF.31738.1
(464 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g086710.1 | plasma-membrane choline transporter family pro... 637 0.0
Medtr6g027560.1 | plasma-membrane choline transporter family pro... 251 1e-66
Medtr3g033520.1 | plasma-membrane choline transporter family pro... 233 3e-61
Medtr3g033520.2 | plasma-membrane choline transporter family pro... 233 4e-61
Medtr5g054780.1 | plasma-membrane choline transporter family pro... 91 2e-18
Medtr1g111330.1 | plasma-membrane choline transporter family pro... 83 6e-16
>Medtr7g086710.1 | plasma-membrane choline transporter family
protein | HC | chr7:33711509-33708521 | 20130731
Length = 456
Score = 637 bits (1643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/433 (71%), Positives = 349/433 (80%), Gaps = 1/433 (0%)
Query: 31 IKAQDSIFPNKTTVAGQIVRRVFQILFYXXXXXXXXXXXXXXXYGLVSDSHTHHFHPRKW 90
I+AQDS F N TVAG+ VR++FQILFY YGLV D THHFHP KW
Sbjct: 23 IEAQDSSFVNTPTVAGKTVRKLFQILFYLYLVLISILVIFITVYGLVLDYSTHHFHPEKW 82
Query: 91 YPPLLASTVCAGILGFTWQWIISCHPTKAFKVAFWLSPLLTCAMGILFVCIGSPVSLSAG 150
YPPLLASTVC GILG WQWII+ HP KA + AFWLSPLLTCAMGILFV IGS +SL G
Sbjct: 83 YPPLLASTVCGGILGLMWQWIIASHPEKALRAAFWLSPLLTCAMGILFVLIGSALSLVVG 142
Query: 151 VIALVFAVIQSLYGCWVSPRFEYATRILSVSIASPPEKTQGXXXXXXXXXXXXXXXXXAG 210
+++L+ AVIQSLYGCWV RF YAT IL VS ASPP KT+ +G
Sbjct: 143 IVSLISAVIQSLYGCWVGKRFVYATEILLVSKASPPAKTKRLACSLTVIGIIYCCFLVSG 202
Query: 211 IGGARALENRTKLAPLFILVILLSLGWSMQFLKNAMQVTISRVKYVHFAGGAAEIDTRVA 270
IGGA+A++NRTKLA + ILVI+LSLGW+MQ LKNA+QVT+SRVKY+HF+GG +IDTRVA
Sbjct: 203 IGGAKAIQNRTKLADICILVIILSLGWTMQVLKNAIQVTVSRVKYMHFSGGG-DIDTRVA 261
Query: 271 ICDTIKYLTGSVCIGSILVPIFGLFRGFARSMSLIGGHTDEFMFSCVSCYMGIASVLVNF 330
CDT+K+L GSVCIGSILVP GLFRGFARS SLIGG T+E MFSCVSC MGIAS+LV
Sbjct: 262 FCDTVKHLIGSVCIGSILVPTIGLFRGFARSTSLIGGETNECMFSCVSCSMGIASLLVTK 321
Query: 331 GNRWGFVHVGVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVS 390
GNRWGFVHVGVYNKGFVQASSD W+MF RVGLE+LIDLDLTG FCF SGVA GAICSLVS
Sbjct: 322 GNRWGFVHVGVYNKGFVQASSDTWDMFIRVGLEELIDLDLTGAFCFLSGVAVGAICSLVS 381
Query: 391 GIWSLAMHKSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQFDSTIPV 450
GIWSL ++K+YA+E+SIY FLIGYF+CRLAIAWPQACVSAYYVAYAENPQSTQFDS IPV
Sbjct: 382 GIWSLILYKNYAMELSIYAFLIGYFLCRLAIAWPQACVSAYYVAYAENPQSTQFDSIIPV 441
Query: 451 RLEQLHRSQALQR 463
RLE+LHRSQA+QR
Sbjct: 442 RLERLHRSQAIQR 454
>Medtr6g027560.1 | plasma-membrane choline transporter family
protein | HC | chr6:9543922-9545950 | 20130731
Length = 237
Score = 251 bits (641), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 131/200 (65%), Positives = 145/200 (72%), Gaps = 26/200 (13%)
Query: 260 GGAAEIDTRVAICDTIKYLTGSVCIGSILVPIFGLFRGFARSMSLIGGHTDEFMFSCVSC 319
G +D VA+ DT+KY GSV IGSILVP FRGFARS+ + GG +DEFMFSCVSC
Sbjct: 63 GCGVMMDPSVALNDTLKYFIGSVSIGSILVPFISTFRGFARSIKIAGGDSDEFMFSCVSC 122
Query: 320 YMGIASVLVNFGNRWGFVHVGVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSG 379
YMGIAS+LV+ GNR VGL QLIDLDLTG FCFFSG
Sbjct: 123 YMGIASILVSCGNR--------------------------VGLVQLIDLDLTGSFCFFSG 156
Query: 380 VAAGAICSLVSGIWSLAMHKSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENP 439
VA GAI SLVSGIWS+ + K+YA E+SIYGFLIGYFM RLA+A PQACVSAYYVAYAENP
Sbjct: 157 VAGGAISSLVSGIWSIVLDKNYATELSIYGFLIGYFMVRLALACPQACVSAYYVAYAENP 216
Query: 440 QSTQFDSTIPVRLEQLHRSQ 459
QST FDSTIP+RLEQL RSQ
Sbjct: 217 QSTHFDSTIPMRLEQLQRSQ 236
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 43/62 (69%)
Query: 89 KWYPPLLASTVCAGILGFTWQWIISCHPTKAFKVAFWLSPLLTCAMGILFVCIGSPVSLS 148
KWYPPL S CAG+ GFTWQWI +P KA FWLSPLLTCAM I+ V I SP+SL
Sbjct: 2 KWYPPLFISIACAGVFGFTWQWITLKNPKKALSAIFWLSPLLTCAMAIMLVYIESPISLI 61
Query: 149 AG 150
G
Sbjct: 62 IG 63
>Medtr3g033520.1 | plasma-membrane choline transporter family
protein | HC | chr3:10739614-10743112 | 20130731
Length = 560
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 200/381 (52%), Gaps = 8/381 (2%)
Query: 75 GLVSDSHTHHFHPRK----WYPPLLASTVCAGILGFTWQWIISCHPTKAFKVAFWLSPLL 130
GLV +S + ++ + P + A+T + IL F WQ I PT W + ++
Sbjct: 159 GLVQESGSVKRKEKRVLMYFLPQVEAATFMSIILAFIWQGAIRKWPTFMVHFILWFTFVM 218
Query: 131 TCAMGILFVCIGSPVSLSAGVIALVFAVIQSLYGCWVSPRFEYATRILSVSIASPPEKTQ 190
+ A GIL +C P + GV + FA+ LYGCW+S R ++ ++LS+S+ + +
Sbjct: 219 SLAAGILLICFQKPPTDGVGVCFIAFAIGNGLYGCWISHRIKFCCKVLSLSLQPMSKFSD 278
Query: 191 GXXXXXXXXXXXXXXXXXAGIGGARALENRTKLAPLFILVILLSLGWSMQFLKNAMQVTI 250
+ AL PL I+ ++LSL W+ + ++N + +T+
Sbjct: 279 LNRPTYYMLAAGFLWISLWTLAVVGALN--FYFPPLVIIALVLSLAWTTEVMRNVVNITV 336
Query: 251 SRVKYVHFAGGAAEIDTRVAICDTIKYLTGSVCIGSILVPIFGLFRGFARSMSLIGGHTD 310
SRV +++ G + T+ + GS C+GS+ VP R AR ++L+ G D
Sbjct: 337 SRVIALYYLRGM-QSSTQFCFLRALTRNLGSACLGSLFVPTIEALRIVARGLNLLEGE-D 394
Query: 311 EFMFSCVSCYMGIASVLVNFGNRWGFVHVGVYNKGFVQASSDVWEMFNRVGLEQLIDLDL 370
EFMF C C +G+ + GN W +V + Y +GFV AS D W +F + + ++D D+
Sbjct: 395 EFMFCCARCCLGVMQSIFRNGNSWAYVQIAAYGRGFVMASQDTWSLFEKEDMVPIVDADI 454
Query: 371 TGVFCFFSGVAAGAICSLVSGIWSLAMHKSYAIEVSIYGFLIGYFMCRLAIAWPQACVSA 430
T CF +GV +G++C +V W+ ++HKS+ +S+ F IGY + R+A+A P ACVS
Sbjct: 455 TSSICFLTGVCSGSMCVIVVAAWTQSVHKSFTATLSLLTFFIGYLLTRIAMAVPHACVSC 514
Query: 431 YYVAYAENPQSTQFDSTIPVR 451
YYV YAENP++ FD TI R
Sbjct: 515 YYVCYAENPENRLFDKTIKDR 535
>Medtr3g033520.2 | plasma-membrane choline transporter family
protein | HC | chr3:10739307-10744080 | 20130731
Length = 579
Score = 233 bits (593), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 200/381 (52%), Gaps = 8/381 (2%)
Query: 75 GLVSDSHTHHFHPRK----WYPPLLASTVCAGILGFTWQWIISCHPTKAFKVAFWLSPLL 130
GLV +S + ++ + P + A+T + IL F WQ I PT W + ++
Sbjct: 178 GLVQESGSVKRKEKRVLMYFLPQVEAATFMSIILAFIWQGAIRKWPTFMVHFILWFTFVM 237
Query: 131 TCAMGILFVCIGSPVSLSAGVIALVFAVIQSLYGCWVSPRFEYATRILSVSIASPPEKTQ 190
+ A GIL +C P + GV + FA+ LYGCW+S R ++ ++LS+S+ + +
Sbjct: 238 SLAAGILLICFQKPPTDGVGVCFIAFAIGNGLYGCWISHRIKFCCKVLSLSLQPMSKFSD 297
Query: 191 GXXXXXXXXXXXXXXXXXAGIGGARALENRTKLAPLFILVILLSLGWSMQFLKNAMQVTI 250
+ AL PL I+ ++LSL W+ + ++N + +T+
Sbjct: 298 LNRPTYYMLAAGFLWISLWTLAVVGALN--FYFPPLVIIALVLSLAWTTEVMRNVVNITV 355
Query: 251 SRVKYVHFAGGAAEIDTRVAICDTIKYLTGSVCIGSILVPIFGLFRGFARSMSLIGGHTD 310
SRV +++ G + T+ + GS C+GS+ VP R AR ++L+ G D
Sbjct: 356 SRVIALYYLRGM-QSSTQFCFLRALTRNLGSACLGSLFVPTIEALRIVARGLNLLEGE-D 413
Query: 311 EFMFSCVSCYMGIASVLVNFGNRWGFVHVGVYNKGFVQASSDVWEMFNRVGLEQLIDLDL 370
EFMF C C +G+ + GN W +V + Y +GFV AS D W +F + + ++D D+
Sbjct: 414 EFMFCCARCCLGVMQSIFRNGNSWAYVQIAAYGRGFVMASQDTWSLFEKEDMVPIVDADI 473
Query: 371 TGVFCFFSGVAAGAICSLVSGIWSLAMHKSYAIEVSIYGFLIGYFMCRLAIAWPQACVSA 430
T CF +GV +G++C +V W+ ++HKS+ +S+ F IGY + R+A+A P ACVS
Sbjct: 474 TSSICFLTGVCSGSMCVIVVAAWTQSVHKSFTATLSLLTFFIGYLLTRIAMAVPHACVSC 533
Query: 431 YYVAYAENPQSTQFDSTIPVR 451
YYV YAENP++ FD TI R
Sbjct: 534 YYVCYAENPENRLFDKTIKDR 554
>Medtr5g054780.1 | plasma-membrane choline transporter family
protein | HC | chr5:22571945-22576944 | 20130731
Length = 491
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 118/250 (47%), Gaps = 24/250 (9%)
Query: 227 FILVILLSLGWSMQFLKNAMQVTIS----RVKYVHFAGGAAEIDTRVAICDTIKY-LT-- 279
++V+ +SL W+ L N + V +S RV +H AA + T +I +++Y LT
Sbjct: 228 LLVVLSVSLFWTGAVLCNTVHVIVSGSLIRVS-IHGGCEAASLPTN-SIMKSLQYALTTS 285
Query: 280 -GSVCIGSILVPIFGLFRGFARSM-SLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWGFV 337
GS+C GS+ R R + S IG +E + CV + LV F N++ +V
Sbjct: 286 FGSICYGSLFTAAIRTLRWEIRGIRSKIG--KNECLLCCVDFLFHLVETLVRFFNKYAYV 343
Query: 338 HVGVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWSLAM 397
+GVY K F +++ D WE+F G+E L+ D +G + G I SG+W+
Sbjct: 344 QIGVYGKSFNRSARDAWELFQSTGVEALVAYDCSGAVLLMGTILGGLITGTCSGVWAWMK 403
Query: 398 HKSYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQS---------TQFDSTI 448
A + L+G + +A+ ++ V++ Y+ YAE+P Q T+
Sbjct: 404 WSDRAFMIGSTSMLMGMILVGVAMVVVESAVTSIYICYAEDPLLIQRWDHEFFNQISETL 463
Query: 449 PVRLEQLHRS 458
RL+ HRS
Sbjct: 464 HQRLQ--HRS 471
>Medtr1g111330.1 | plasma-membrane choline transporter family
protein | HC | chr1:50302012-50297718 | 20130731
Length = 496
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 9/224 (4%)
Query: 227 FILVILLSLGWSMQFLKNAMQVTISRVKYVHFAGGAAEIDTRVA--ICDTIKY-LT---G 280
++V +SL W+ L N + V +S + ++ G E + A + +++Y LT G
Sbjct: 234 LLVVFSVSLFWTGAVLCNTVHVIVSGMVFLVLLHGGREAASIPANSLMKSLQYALTTSFG 293
Query: 281 SVCIGSILVPIFGLFRGFARSM-SLIGGHTDEFMFSCVSCYMGIASVLVNFGNRWGFVHV 339
S+C GS+ R R + S IG +E + CV + LV F N++ +V +
Sbjct: 294 SICYGSLFTAAIRTLRWEIRGLRSKIG--NNECLLCCVDFLFHLVETLVRFFNKYAYVQI 351
Query: 340 GVYNKGFVQASSDVWEMFNRVGLEQLIDLDLTGVFCFFSGVAAGAICSLVSGIWSLAMHK 399
V K F ++ D WE+F G+E L+ D +G + G I +G+W+
Sbjct: 352 AVNGKSFNNSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITGTCAGVWAWVKWS 411
Query: 400 SYAIEVSIYGFLIGYFMCRLAIAWPQACVSAYYVAYAENPQSTQ 443
I + L+G + LA+ ++ V++ Y+ YAE+P Q
Sbjct: 412 DRVIMIGSTSMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIQ 455