Miyakogusa Predicted Gene
- Lj1g3v3960360.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3960360.1 Non Characterized Hit- tr|B9SJM2|B9SJM2_RICCO
Polygalacturonase, putative OS=Ricinus communis
GN=RCO,41.01,2e-19,Pectin lyase-like,Pectin lyase fold/virulence
factor; Glyco_hydro_28,Glycoside hydrolase, family 28;,CUFF.31726.1
(149 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g100040.1 | polygalacturonase | LC | chr2:42942787-4294449... 199 1e-51
Medtr5g097860.1 | polygalacturonase | HC | chr5:42842979-4284475... 168 2e-42
Medtr2g058640.1 | polygalacturonase 11c, putative | HC | chr2:24... 149 9e-37
Medtr2g058670.1 | polygalacturonase 11c, putative | HC | chr2:24... 143 7e-35
Medtr2g058840.1 | polygalacturonase 11c, putative | HC | chr2:24... 142 9e-35
Medtr5g063430.1 | polygalacturonase/glycoside hydrolase family p... 109 8e-25
Medtr3g438050.1 | polygalacturonase/glycoside hydrolase family p... 109 1e-24
Medtr8g030930.1 | polygalacturonase/glycoside hydrolase family p... 93 7e-20
Medtr2g049400.1 | pectin lyase superfamily protein | LC | chr2:2... 84 5e-17
Medtr1g088160.1 | polygalacturonase | HC | chr1:39392282-3939047... 81 4e-16
Medtr5g033680.1 | polygalacturonase | HC | chr5:14519678-1451629... 78 4e-15
Medtr4g120320.1 | polygalacturonase | HC | chr4:49884372-4988630... 77 4e-15
Medtr2g435640.1 | polygalacturonase | HC | chr2:13796366-1379143... 77 6e-15
Medtr4g084050.1 | polygalacturonase | LC | chr4:32729268-3273117... 72 2e-13
Medtr4g094715.1 | pectin lyase superfamily protein | HC | chr4:3... 70 6e-13
Medtr5g043350.1 | polygalacturonase/glycoside hydrolase family p... 70 7e-13
Medtr3g084360.1 | polygalacturonase/glycoside hydrolase family p... 69 1e-12
Medtr4g083660.1 | polygalacturonase | HC | chr4:32524282-3252202... 68 3e-12
Medtr5g034090.1 | polygalacturonase | HC | chr5:14734905-1473941... 67 4e-12
Medtr2g103650.1 | polygalacturonase/glycoside hydrolase family p... 67 7e-12
Medtr7g110050.1 | polygalacturonase/glycoside hydrolase family p... 67 8e-12
Medtr1g012390.1 | polygalacturonase | HC | chr1:2451099-2447667 ... 66 1e-11
Medtr6g005630.2 | polygalacturonase | HC | chr6:863153-867302 | ... 66 1e-11
Medtr6g005630.1 | polygalacturonase | HC | chr6:863153-867302 | ... 65 2e-11
Medtr1g086390.1 | polygalacturonase/glycoside hydrolase family p... 65 3e-11
Medtr8g010110.1 | polygalacturonase | LC | chr8:2562133-2566759 ... 65 3e-11
Medtr8g009810.1 | pectin lyase superfamily protein | HC | chr8:2... 64 5e-11
Medtr5g034090.2 | polygalacturonase | HC | chr5:14734905-1473875... 64 6e-11
Medtr6g028080.1 | polygalacturonase | HC | chr6:9978081-9985497 ... 63 8e-11
Medtr8g065030.1 | pectin lyase superfamily protein | HC | chr8:2... 63 8e-11
Medtr7g091850.1 | endo polygalacturonase | HC | chr7:36360735-36... 63 9e-11
Medtr7g091840.1 | endo polygalacturonase | HC | chr7:36349369-36... 62 1e-10
Medtr8g010080.1 | polygalacturonase | LC | chr8:2548763-2551323 ... 62 2e-10
Medtr2g103410.2 | polygalacturonase | HC | chr2:44519609-4452318... 62 2e-10
Medtr2g103410.1 | polygalacturonase | HC | chr2:44519609-4452318... 61 3e-10
Medtr2g032710.2 | polygalacturonase plant-like protein | HC | ch... 61 4e-10
Medtr2g032710.1 | polygalacturonase plant-like protein | HC | ch... 61 4e-10
Medtr8g065010.1 | polygalacturonase plant-like protein | HC | ch... 61 4e-10
Medtr7g035415.1 | polygalacturonase | LC | chr7:13555483-1355938... 60 6e-10
Medtr3g054320.1 | polygalacturonase/glycoside hydrolase family p... 60 8e-10
Medtr8g008765.1 | polygalacturonase | LC | chr8:1861927-1866353 ... 60 9e-10
Medtr1g052315.1 | endo polygalacturonase | HC | chr1:21186740-21... 60 1e-09
Medtr8g010090.1 | polygalacturonase/glycoside hydrolase family p... 57 5e-09
Medtr3g084380.1 | polygalacturonase/glycoside hydrolase family p... 57 6e-09
Medtr2g060350.1 | polygalacturonase | HC | chr2:24855141-2485865... 54 6e-08
Medtr8g010070.1 | polygalacturonase | LC | chr8:2539644-2543850 ... 54 7e-08
Medtr8g010050.1 | pectin lyase superfamily protein | LC | chr8:2... 54 7e-08
Medtr8g010040.1 | polygalacturonase | LC | chr8:2522127-2526378 ... 51 3e-07
Medtr2g029170.1 | endo-polygalacturonase | HC | chr2:10881421-10... 50 9e-07
Medtr1g013740.1 | polygalacturonase | HC | chr1:3276100-3272148 ... 50 1e-06
Medtr8g077320.1 | pectin lyase superfamily protein | LC | chr8:3... 48 3e-06
Medtr3g030540.1 | polygalacturonase | LC | chr3:9670728-9674889 ... 48 3e-06
Medtr0157s0060.1 | polygalacturonase/glycoside hydrolase family ... 47 1e-05
Medtr4g034020.1 | polygalacturonase/glycoside hydrolase family p... 47 1e-05
>Medtr2g100040.1 | polygalacturonase | LC | chr2:42942787-42944494 |
20130731
Length = 365
Score = 199 bits (505), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 94/142 (66%), Positives = 107/142 (75%)
Query: 2 LNIITSALFLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPN 61
+ I T L LL+ S++ +QS V DVTK S G+IT+A IA WKE CASTS SKILIP
Sbjct: 3 IGICTFVLLLLMASSSRSQSVVLDVTKHATISVGEITEALIATWKEACASTSSSKILIPK 62
Query: 62 GKYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDG 121
G YKL+QV+LRGPC AP+E+QVDGTIEAP D QLDG YQW+ FGY +FFTLSGVGTFDG
Sbjct: 63 GTYKLKQVNLRGPCNAPIEIQVDGTIEAPADLTQLDGKYQWIIFGYFDFFTLSGVGTFDG 122
Query: 122 QGEAAWKQNDCKKRWNCKKLSM 143
GE AWKQN C K NC LSM
Sbjct: 123 LGEVAWKQNGCGKNKNCNMLSM 144
>Medtr5g097860.1 | polygalacturonase | HC | chr5:42842979-42844751 |
20130731
Length = 343
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 7 SALFLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGKYKL 66
+A+ L + AQ +FD+ FG SN DIT AF WK C ST+ SK++IP G YK+
Sbjct: 8 TAIVLSFATLGIAQPNIFDIKSFGGASNADITMAFTNAWKAACGSTTASKVIIPRGIYKI 67
Query: 67 EQVDLRGPCKAPMEVQVDGTIEAPIDPAQL-DGNYQWVRFGYLNFFTLSGVGTFDGQGEA 125
VD++GPCKAP+EVQVDGTI+A +P +L D +YQWV+FGY+++FTLSG G FDG GE
Sbjct: 68 HAVDVKGPCKAPIEVQVDGTIQASQNPDELNDASYQWVKFGYVDYFTLSGKGVFDGNGET 127
Query: 126 AWKQNDCKKRWNCKKLSM 143
AW QNDC K CK+ SM
Sbjct: 128 AWTQNDCGKNSTCKRRSM 145
>Medtr2g058640.1 | polygalacturonase 11c, putative | HC |
chr2:24232613-24230991 | 20130731
Length = 407
Score = 149 bits (376), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Query: 10 FLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGKYKLEQV 69
FL L QS V D++KFG N DIT A WKE CAST+ SKI+IP G YK+ +
Sbjct: 11 FLFLAEFCAVQSLVLDISKFGGAPNSDITLALGNAWKEACASTTASKIVIPGGTYKMGGI 70
Query: 70 DLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQ 129
+L+GPCKAP+EVQVDGTI+AP DP+Q+ QWV+F Y+ TLSG G FDGQG A+KQ
Sbjct: 71 ELKGPCKAPIEVQVDGTIQAPADPSQIKAADQWVKFLYMEHLTLSGKGVFDGQGATAYKQ 130
Query: 130 NDCKKRWNCKKLSMVKEYMS 149
W+ KK S VK M+
Sbjct: 131 AQPAAAWSGKK-SNVKILMN 149
>Medtr2g058670.1 | polygalacturonase 11c, putative | HC |
chr2:24244330-24242502 | 20130731
Length = 419
Score = 143 bits (360), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%)
Query: 10 FLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGKYKLEQV 69
FL L AQS V D+ KFG N DI A A WKE CAST+ +KI+IP G Y+L +
Sbjct: 11 FLFLADFCAAQSGVLDIAKFGGKPNSDIGMALTAAWKEACASTTAAKIVIPAGTYQLNGI 70
Query: 70 DLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQ 129
+L+GPCKAP+E+QVDGTI+AP DP+ + G QW +F Y++ TLSG G FDGQG + +K+
Sbjct: 71 ELKGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGASVYKK 130
Query: 130 NDCKKRWNCK 139
W+ K
Sbjct: 131 AQPAAAWSGK 140
>Medtr2g058840.1 | polygalacturonase 11c, putative | HC |
chr2:24297949-24299598 | 20130731
Length = 417
Score = 142 bits (359), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 85/128 (66%)
Query: 10 FLLLVSAANAQSRVFDVTKFGVNSNGDITQAFIAVWKEGCASTSPSKILIPNGKYKLEQV 69
FL L AQS V D+ KFG N DI A A WKE CAST+ +KI+IP G Y+L +
Sbjct: 11 FLFLADFCAAQSGVLDIAKFGGKPNSDIGMALTAAWKEACASTTAAKIVIPAGTYQLNGI 70
Query: 70 DLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQ 129
+L+GPCKAP+E+QVDGTI+AP DP+ + G QW +F Y++ TLSG G FDGQG + +K+
Sbjct: 71 ELKGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGASVYKK 130
Query: 130 NDCKKRWN 137
W+
Sbjct: 131 AQPAAAWS 138
>Medtr5g063430.1 | polygalacturonase/glycoside hydrolase family
protein | LC | chr5:26299058-26301816 | 20130731
Length = 315
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 86/151 (56%), Gaps = 10/151 (6%)
Query: 3 NIITSALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIP 60
N++ + L+ + AQ ++F+V + +SNG D ++AF+ W + C S ILIP
Sbjct: 4 NVLFLLILLVCIVETEAQYKIFNVITYNASSNGNTDNSEAFLKAWSDACKWKGKSTILIP 63
Query: 61 NGKYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFD 120
NG Y L RGPC + + +++G ++APIDP + W+ F Y+N + G G+ D
Sbjct: 64 NGTYTL-----RGPCNSSINFRLEGLLKAPIDPKSFASD-NWINFKYVNKLMVGGGGSLD 117
Query: 121 GQGEAAWKQNDCKKRWNCKKL--SMVKEYMS 149
QG AWK NDC+K NC+ L SM +Y++
Sbjct: 118 AQGAYAWKMNDCQKNPNCRPLPTSMKFDYIT 148
>Medtr3g438050.1 | polygalacturonase/glycoside hydrolase family
protein | HC | chr3:13011474-13013852 | 20130731
Length = 395
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 9/156 (5%)
Query: 1 MLNIITSALFLLLVSAANAQSRV---FDVTKFGVNSNG--DITQAFIAVWKEGCASTSPS 55
M+ I L LL V + +Q+RV F+V +G ++G D +AF+ W + C S
Sbjct: 1 MVGNILFVLGLLAVCISESQARVTNVFNVLNYGAIADGKTDNKEAFLKAWSDACNSNGKV 60
Query: 56 KILIPNGKYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSG 115
+LIP G Y ++QV GPCK ++ GT++APIDP +W+ F Y+N + G
Sbjct: 61 TLLIPKGTYMVKQVIFSGPCKGSTNFKIQGTLKAPIDP--FFATDKWINFQYVNNLVVGG 118
Query: 116 VGTFDGQGEAAWKQNDCKKRWNCKKL--SMVKEYMS 149
GT DGQG +AW NDCK NC +L SM ++++
Sbjct: 119 PGTLDGQGSSAWSVNDCKNNPNCPRLPISMTFDFVT 154
>Medtr8g030930.1 | polygalacturonase/glycoside hydrolase family
protein | LC | chr8:11531499-11533056 | 20130731
Length = 399
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 9/144 (6%)
Query: 12 LLVSAANA----QSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSK--ILIPNGK 63
LLV A A Q+++F+V +G S+G D + AF+ W + C + K +LIP G
Sbjct: 11 LLVCIAEAHRQIQNKLFNVINYGARSDGNTDNSAAFLKAWSDACRWSGKGKATVLIPQGT 70
Query: 64 YKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQG 123
Y L++V GPC A M ++G ++AP DP N W+ F Y+N T+ G G GQG
Sbjct: 71 YMLKEVVFSGPCNAWMNFHIEGLLKAPSDPYSFK-NGDWINFRYVNKLTVGGGGILYGQG 129
Query: 124 EAAWKQNDCKKRWNCKKLSMVKEY 147
+AWK NDCKK NC+ L + ++
Sbjct: 130 SSAWKTNDCKKNSNCRSLPITMKF 153
>Medtr2g049400.1 | pectin lyase superfamily protein | LC |
chr2:21772816-21776116 | 20130731
Length = 391
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 8/129 (6%)
Query: 8 ALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYK 65
A F +L +NA S +V FG S+G D T+ F++ W C S S I +P G +
Sbjct: 14 ATFSILFETSNAAS--INVASFGAKSDGTQDSTKPFLSAWSLACKSNEASTIYVPQGSFL 71
Query: 66 LEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEA 125
L+QV GPC ++ ++DGTI AP L + W+ F +N+ ++ G GTFDG+G
Sbjct: 72 LKQVSFWGPCLNKIDFKIDGTIVAPSKYESLGNSGYWILFMKVNWVSIYG-GTFDGKGAG 130
Query: 126 AWKQNDCKK 134
W+ C+K
Sbjct: 131 YWR---CRK 136
>Medtr1g088160.1 | polygalacturonase | HC | chr1:39392282-39390473 |
20130731
Length = 407
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 17/149 (11%)
Query: 9 LFLLLVSAANAQSR----------VFDVTKFGVNSNG--DITQAFIAVWKEGC-ASTSPS 55
L +L +S A R ++DVTKFG ++G D + A W+ C ST P+
Sbjct: 10 LGILFISVIGASGRSLLDNGSAGGIYDVTKFGAVADGKTDNVEKIRAAWQAACKTSTVPA 69
Query: 56 KILIPNGKYKLEQVDLRGPCKAP--MEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTL 113
+LIP G + Q GPC +P + V++ G +A D ++ + +W +F ++ L
Sbjct: 70 TVLIPAGTFVTGQTLFAGPCTSPKPITVEIVGKAQATTDLSEYY-SPEWFQFENIDGLVL 128
Query: 114 SGVGTFDGQGEAAWKQNDCKK-RWNCKKL 141
G G FDGQG +W NDCK+ + NC L
Sbjct: 129 KGSGVFDGQGSISWPLNDCKQNKGNCASL 157
>Medtr5g033680.1 | polygalacturonase | HC | chr5:14519678-14516292 |
20130731
Length = 470
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 6/113 (5%)
Query: 20 QSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNG-KYKLEQVDLRGPCK 76
Q FD+ FG NG D ++AF+A WK C S + I +P K+ ++ + L+GPC
Sbjct: 55 QPNTFDIMSFGAKGNGVSDDSEAFLAAWKCACK-VSGATIKVPEKLKFLIKPITLQGPCM 113
Query: 77 APMEVQVDGTIEAPIDPAQLDGN--YQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
+ +Q+DGTI AP + + + +QW+ F ++ FT+ G GT DGQG W
Sbjct: 114 PDLTLQIDGTILAPPEVSSWPKSNLFQWINFKWVQNFTIKGYGTIDGQGSNWW 166
>Medtr4g120320.1 | polygalacturonase | HC | chr4:49884372-49886301 |
20130731
Length = 422
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 22 RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKA-- 77
++ +V FG +G D TQAF+ W+ C ++ +P G++ + ++ GPC A
Sbjct: 50 KLVNVLSFGAKGDGVTDCTQAFMQTWQAVCKKPGQNRFYVPAGRFLVSEIIFAGPCLAPK 109
Query: 78 PMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWK-QNDCK 133
P+ +QV GTI A D ++ N +W F LN + G GTFDGQG+ +WK DCK
Sbjct: 110 PVTIQVVGTILATTDISEY-ANGRWFEFQDLNGLKMLGGGTFDGQGQESWKFAEDCK 165
>Medtr2g435640.1 | polygalacturonase | HC | chr2:13796366-13791435 |
20130731
Length = 423
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 22 RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPC--KA 77
++ +V FG +G D TQAF+ W+ C S +++LIP+G++ + + GPC
Sbjct: 51 KIINVMSFGAKPDGKSDCTQAFMDGWQAACKSKVQARLLIPSGRFLVSSMFFSGPCLTPG 110
Query: 78 PMEVQVDGTIEAPIDPAQ-LDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWK 128
P+ +QV GT+ A D + +DG +W+ F ++ L G GTFDGQG+++WK
Sbjct: 111 PITIQVVGTVVATTDISDYVDG--EWLMFQKISGLKLIGGGTFDGQGQSSWK 160
>Medtr4g084050.1 | polygalacturonase | LC | chr4:32729268-32731175 |
20130731
Length = 394
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 12/140 (8%)
Query: 1 MLNIITSALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPS-KI 57
M + L ++ S Q+ F+V K+G +G D + AF W++ C ST + +
Sbjct: 1 MKGLFVLCLIFVIASPCLCQNY-FNVVKYGAKGDGHTDDSNAFTNAWQDVCGSTRDTPTL 59
Query: 58 LIPNGK-YKLEQVDLRGPCKAP-MEVQVDGTIEAPIDPAQL-----DGNYQWVRFGYLNF 110
+IP G+ + L+ + +GPCK+ + V++ GTI AP A DG+Y W++F +N
Sbjct: 60 IIPEGQNFMLQPLSFQGPCKSTTISVKIMGTITAPQSNANWKWDDNDGDY-WIKFSNING 118
Query: 111 FTLSGVGTFDGQGEAAWKQN 130
++G GT DGQG++ W N
Sbjct: 119 LIINGGGTVDGQGDSWWNNN 138
>Medtr4g094715.1 | pectin lyase superfamily protein | HC |
chr4:38832640-38835379 | 20130731
Length = 461
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 15/141 (10%)
Query: 23 VFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKAPME 80
+FDVT FG +G D T AF WK CA S ++ N + + + GPCK +
Sbjct: 64 IFDVTSFGAIGDGSADDTPAFKKAWKAACAVESGILLVPENYTFMITSIIFSGPCKPGLV 123
Query: 81 VQVDGTIEAPIDP---AQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKRWN 137
QVDG + AP P + D QW+ F L+ +L+G GT +G G+ W CK
Sbjct: 124 FQVDGMLMAPDGPDSWPEADSRNQWLVFYKLDQMSLNGTGTIEGNGDQWWDL-PCKPHRG 182
Query: 138 ---------CKKLSMVKEYMS 149
C +M++ +MS
Sbjct: 183 PDGKTLSGPCGSPAMIRFFMS 203
>Medtr5g043350.1 | polygalacturonase/glycoside hydrolase family
protein | LC | chr5:19058555-19056081 | 20130731
Length = 400
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 11/138 (7%)
Query: 1 MLNIITSALFLLLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPS-KI 57
++ +ITS ++ + + F+V +G N +G D + AF+ W + C +T + +
Sbjct: 8 LMFVITSQCLCGRITPDDGSN--FNVLTYGANGDGNTDDSNAFVKAWNDVCGTTQGTPTL 65
Query: 58 LIPNGK-YKLEQVDLRGPCKAP-MEVQVDGTIEAPIDPA----QLDGNYQWVRFGYLNFF 111
+IP GK + L+ + +GPCK+ ++V+V GTI AP D + + WV+F +N
Sbjct: 66 IIPEGKTFMLQPLSFQGPCKSTTIQVEVKGTITAPKDIEAWKWKDNKRRSWVQFSKINGL 125
Query: 112 TLSGVGTFDGQGEAAWKQ 129
+ G GT DGQG WK+
Sbjct: 126 AVYGEGTIDGQGAPWWKK 143
>Medtr3g084360.1 | polygalacturonase/glycoside hydrolase family
protein | LC | chr3:38089185-38091032 | 20130731
Length = 391
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 70/130 (53%), Gaps = 17/130 (13%)
Query: 13 LVSAANAQSRVFDVTKFGV--NSNGDITQAFIAVWKEGCASTSPS-KILIPNGK-YKLEQ 68
LV+ + F+V +G +SN D + AF+ W+E C ST + ++IP GK + L+
Sbjct: 13 LVNRKPLAQKSFNVVNYGAKGDSNTDDSNAFLKAWQEVCGSTQGTPTLIIPGGKKFMLQP 72
Query: 69 VDLRGPCKAP-MEVQVDGTIEAPIDPAQLDGNYQW--------VRFGYLNFFTLSGVGTF 119
+GPCK+ ++V + GTI AP Q G ++W + F ++ +SG GTF
Sbjct: 73 SSFQGPCKSSTVKVMMMGTIIAP----QSSGKWKWDSRDDDAWISFSHIKGLIISGEGTF 128
Query: 120 DGQGEAAWKQ 129
DGQG + WK
Sbjct: 129 DGQGASWWKN 138
>Medtr4g083660.1 | polygalacturonase | HC | chr4:32524282-32522029 |
20130731
Length = 374
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 19 AQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPC- 75
+ S ++V +G +G D T+AF VW + C+S P+ I +P GK+ L G C
Sbjct: 4 SSSSTYNVINYGAKPDGKTDSTKAFGNVWAKACSSPYPASIYVPQGKFLLGTATFSGKCI 63
Query: 76 KAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKK- 134
+ + +DGT+ A + N W++F +++ ++ G G DGQG A W DCK
Sbjct: 64 NKAISITIDGTLVASSNYRVTGKNGNWLKFQHVDGVSIRG-GLLDGQGTALW---DCKNS 119
Query: 135 -RWNCKKLSMVKEY 147
+ NC + E+
Sbjct: 120 DKSNCPIGATTLEF 133
>Medtr5g034090.1 | polygalacturonase | HC | chr5:14734905-14739416 |
20130731
Length = 534
Score = 67.4 bits (163), Expect = 4e-12, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 20 QSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGP-CK 76
S F+V +G +G D T+AF A W C + + ++ N + + + GP CK
Sbjct: 117 HSTFFNVLDYGAKGDGNTDDTKAFQATWAATCKVEASTMVIPANYIFYVGPISFSGPYCK 176
Query: 77 APMEVQVDGTIEAPIDPAQLDG-NYQWVRFGYLNFFTLSGVGTFDGQGEAAWK 128
A + Q+DGTI AP +P G QW+ F L T+ G G DG+G W+
Sbjct: 177 ANIVFQLDGTIIAPTNPNAWSGVTLQWLEFTKLEGITIQGNGVIDGRGSVWWQ 229
>Medtr2g103650.1 | polygalacturonase/glycoside hydrolase family
protein | HC | chr2:44629212-44625414 | 20130731
Length = 404
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 7/116 (6%)
Query: 21 SRVFDVTKFGVNSNGDI--TQAFIAVWKEGCASTS-PSKILIPNGK-YKLEQVDLRGPCK 76
+ F+V ++G +G + AF+ WK+ C S S S+++IP K + L + RGPCK
Sbjct: 25 TTTFNVLQYGAVGDGKTNDSPAFLKAWKDVCNSKSGTSRLIIPAAKTFLLRPIAFRGPCK 84
Query: 77 AP-MEVQVDGTIEAPIDPAQLDGN--YQWVRFGYLNFFTLSGVGTFDGQGEAAWKQ 129
+ + +++ G I AP ++ G+ W+ F ++N +SG GT DG+G WKQ
Sbjct: 85 SNYIYIELSGNIIAPKTKSEYSGSPINTWIGFSFVNGLIISGKGTVDGRGSMWWKQ 140
>Medtr7g110050.1 | polygalacturonase/glycoside hydrolase family
protein | HC | chr7:45103855-45101037 | 20130731
Length = 462
Score = 66.6 bits (161), Expect = 8e-12, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 18 NAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSP-SKILIPNG-KYKLEQVDLRG 73
N S +FDV FG +G D T++F W C + S + IL+P G + ++ G
Sbjct: 61 NNASGIFDVRSFGAIGDGIEDDTESFKMAWDTACQNGSDVNVILVPQGFSFVIQSTIFTG 120
Query: 74 PCKAPMEVQVDGTIEAPIDPAQLDGN---YQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
PC+ + +VDGT+ AP P N QW+ F + +L G G+ DG+G+ W
Sbjct: 121 PCQGDLIFKVDGTVLAPDGPESWPKNNSRRQWLVFYRMKGMSLEGSGSIDGRGQKWW 177
>Medtr1g012390.1 | polygalacturonase | HC | chr1:2451099-2447667 |
20130731
Length = 397
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 1 MLNIITSALFLLLVSAANA----QSRVFDVTKFGVNSNG--DITQAFIAVWKEGCAST-- 52
M ++ S L + + + N+ F+V ++G +G D TQAF+ WK CA+
Sbjct: 1 MQDLFISGLLIFSIVSCNSFVGFSQNTFNVLQYGAKGDGTSDDTQAFLEAWKALCAANQG 60
Query: 53 SPSKILIPNGKYKLEQVDLRGPCKAP-MEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFF 111
+P+ ++ + + Q +GPCK+ + +Q+ G I AP A + +W+ F ++
Sbjct: 61 TPTLVVPAEHTFFVRQATFQGPCKSQNLHIQIMGNIIAPHRDAWGSCSKRWLYFLNVHGM 120
Query: 112 TLSGVGTFDGQGEAAWK 128
T+ G G DG+GEA W
Sbjct: 121 TVDGSGVIDGRGEAWWS 137
>Medtr6g005630.2 | polygalacturonase | HC | chr6:863153-867302 |
20130731
Length = 402
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 19 AQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGP- 74
A S F+V FG +G D T+AF W C + S +++P+G + ++ + GP
Sbjct: 40 ATSSTFNVLDFGAKGDGHSDDTKAFEDAWAAACKMEA-STMVVPSGSVFLVKPISFSGPN 98
Query: 75 CKAPMEVQVDGTIEAPIDPAQL-DGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCK 133
C+ + Q+DG I AP P+ G QW+ F LN T+ G G DGQG W ND +
Sbjct: 99 CEPNIVFQLDGKIIAPTSPSAWGSGTLQWLEFTKLNKITIKGKGVIDGQGSVWW--NDSE 156
Query: 134 K 134
K
Sbjct: 157 K 157
>Medtr6g005630.1 | polygalacturonase | HC | chr6:863153-867302 |
20130731
Length = 425
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 62/121 (51%), Gaps = 8/121 (6%)
Query: 19 AQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGP- 74
A S F+V FG +G D T+AF W C + S +++P+G + ++ + GP
Sbjct: 40 ATSSTFNVLDFGAKGDGHSDDTKAFEDAWAAACKMEA-STMVVPSGSVFLVKPISFSGPN 98
Query: 75 CKAPMEVQVDGTIEAPIDPAQL-DGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCK 133
C+ + Q+DG I AP P+ G QW+ F LN T+ G G DGQG W ND +
Sbjct: 99 CEPNIVFQLDGKIIAPTSPSAWGSGTLQWLEFTKLNKITIKGKGVIDGQGSVWW--NDSE 156
Query: 134 K 134
K
Sbjct: 157 K 157
>Medtr1g086390.1 | polygalacturonase/glycoside hydrolase family
protein | HC | chr1:38659765-38662894 | 20130731
Length = 477
Score = 64.7 bits (156), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 21 SRVFDVTKFGVNSNG--DITQAFIAVWKEGCAST-SPSKILIPNG-KYKLEQVDLRGPCK 76
S + DV KFG +G D T++F W C S + I +P G + ++ GPCK
Sbjct: 78 SGLLDVRKFGAIGDGITDDTESFKMAWDTACQSELDLNVIFVPPGFSFIVQSTIFTGPCK 137
Query: 77 APMEVQVDGTIEAPIDPAQL---DGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
+ ++VDGTI P P + QW+ F +N +L G GT DG+G+ W
Sbjct: 138 GGLVLKVDGTIMTPDGPESWLKNNSRRQWLVFYRVNGMSLEGSGTIDGRGQKWW 191
>Medtr8g010110.1 | polygalacturonase | LC | chr8:2562133-2566759 |
20130731
Length = 389
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 1 MLNIITSALFLLLVSAA-------NAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCAS 51
M I AL L VS ++ +++V ++G +G D QAF++ + C +
Sbjct: 1 MQGFIALALILGFVSPCLCTRMNVGTENAIYNVIQYGARGDGITDDLQAFVSAFSSACKA 60
Query: 52 TSPSKILIPNGK-YKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNF 110
S ++IP GK Y + + + GPC A + +Q++G I AP A Y W+ Y+N
Sbjct: 61 AGMSTLIIPAGKKYMVSKANFSGPCSARVLIQLEGQIVAPSRAASKSKLY-WISVKYVNE 119
Query: 111 FTLSG--VGTFDGQGEAAWKQNDCKK 134
T+ G G F G G W+ C +
Sbjct: 120 LTIDGNNKGGFHGGGRTWWQCPTCDR 145
>Medtr8g009810.1 | pectin lyase superfamily protein | HC |
chr8:2423952-2426973 | 20130731
Length = 400
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 9/132 (6%)
Query: 8 ALFLLLV-SAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKY 64
ALF+ + N ++ FG N NG D A + W C+ST+P+ I +P G++
Sbjct: 18 ALFMFFTFKSTNGIEETLNIVSFGANPNGESDSKNAILTAWTSACSSTTPTTIYVPIGRF 77
Query: 65 KL-EQVDLRGPCKAP-MEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQ 122
+ V +G C + V++DGT+ A + + W+ F ++ ++ G G DGQ
Sbjct: 78 LVGGSVVFKGRCNNKGITVRIDGTLVATSNYGVIGNEGSWLLFDDVDGVSIIG-GILDGQ 136
Query: 123 GEAAWKQNDCKK 134
G + W DCK+
Sbjct: 137 GTSLW---DCKR 145
>Medtr5g034090.2 | polygalacturonase | HC | chr5:14734905-14738756 |
20130731
Length = 416
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 20 QSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGP-CK 76
S F+V +G +G D T+AF A W C + + ++ N + + + GP CK
Sbjct: 117 HSTFFNVLDYGAKGDGNTDDTKAFQATWAATCKVEASTMVIPANYIFYVGPISFSGPYCK 176
Query: 77 APMEVQVDGTIEAPIDPAQLDG-NYQWVRFGYLNFFTLSGVGTFDGQGEAAWK 128
A + Q+DGTI AP +P G QW+ F L T+ G G DG+G W+
Sbjct: 177 ANIVFQLDGTIIAPTNPNAWSGVTLQWLEFTKLEGITIQGNGVIDGRGSVWWQ 229
>Medtr6g028080.1 | polygalacturonase | HC | chr6:9978081-9985497 |
20130731
Length = 400
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 24 FDVTKFGVNSNG--DITQAFIAVWKEGC-ASTSPSKILIPNGK-YKLEQVDLRGPCKAP- 78
F+V +G NG D T+AF+ WK+ C A S +LIP GK + L+ V +GPC +
Sbjct: 30 FNVLDYGAVGNGKNDETRAFVDAWKDTCIAMHESSTLLIPKGKTFMLQPVWFQGPCNSSN 89
Query: 79 MEVQVDGTIEAPIDPAQL---DGNYQ--WVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCK 133
+ V+++GTI AP + + NY+ W+RF ++ + G G DG+G W DC
Sbjct: 90 IYVKLEGTIIAPKNIEAWKWPNDNYKGSWIRFIEISGLIVYGGGIIDGKGAQWW---DCH 146
Query: 134 KRWNCKK 140
C+K
Sbjct: 147 SNIKCEK 153
>Medtr8g065030.1 | pectin lyase superfamily protein | HC |
chr8:27313786-27310073 | 20130731
Length = 461
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 23 VFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGPCKAPM 79
+ ++ FG NG D T+A W C ST S +LIP G+ Y + GPCK +
Sbjct: 64 LVNIDSFGAAGNGETDDTEALQKAWGVAC-STPKSVLLIPKGRRYLVNATKFIGPCKDNL 122
Query: 80 EVQVDGTIEAPIDPAQLDGNYQ--WVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKK 134
+Q+DGT+ AP DP D W+ F L G G DG G W + CKK
Sbjct: 123 IIQIDGTLVAPEDPKNWDPKLPRVWLDFSKLKKAVFQGSGVIDGSGSKWWAAS-CKK 178
>Medtr7g091850.1 | endo polygalacturonase | HC |
chr7:36360735-36353948 | 20130731
Length = 450
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 22 RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKAPM 79
++ +V +G +G D TQAF W+ C+S + + Y L+ + GPCK+ +
Sbjct: 74 KIVNVRDYGAKGDGHTDDTQAFKKAWEVVCSSGQSVLVAPQDYNYLLKPIRFSGPCKSNI 133
Query: 80 EVQVDGTIEAPIDPAQL-DGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKR 135
VQ+ G++EA +P+ + W+ F + ++G GT DG+G W +N CK+
Sbjct: 134 SVQISGSLEASDNPSDYSEDQRHWLVFVEVQQLLVNGGGTIDGKGNIWW-ENSCKRN 189
>Medtr7g091840.1 | endo polygalacturonase | HC |
chr7:36349369-36347147 | 20130731
Length = 384
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 8/125 (6%)
Query: 22 RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIP--NGKYKLEQVDLRGPCKA 77
++F+V+ +G +G D TQAF W+ C+S + + + Y L+ + GPCK+
Sbjct: 63 QIFNVSDYGAKGDGKTDDTQAFEKAWEAVCSSGGGEAVFVAPQDNIYLLKPIRFSGPCKS 122
Query: 78 PMEVQVDGTIEAPIDPAQLDGN-YQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKRW 136
+ Q+ G + A +P+ + W+ F + ++G GT DG+G W +N CK+
Sbjct: 123 KISFQISGVLIASNNPSDYSKDPGHWLVFAKVQQLVVNGGGTLDGKG-TIWWENSCKRNK 181
Query: 137 N--CK 139
N CK
Sbjct: 182 NKPCK 186
>Medtr8g010080.1 | polygalacturonase | LC | chr8:2548763-2551323 |
20130731
Length = 388
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 23 VFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKAPME 80
+++V ++G +G D ++AF + W C + S ++IP + ++ GPC A +
Sbjct: 30 IYNVMQYGARGDGKSDDSKAFFSAWSSACKAVGTSTLVIPGKIFMASKIHFSGPCSAKIL 89
Query: 81 VQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTL--SGVGTFDGQGEAAWKQNDCKK 134
+Q+ G I AP A G +W+ Y+N T+ +G G+ G G W+ C +
Sbjct: 90 IQLKGKIVAP-SKAAWRGGSEWINVEYVNGLTIDGNGEGSVLGDGPTWWQCPRCSR 144
>Medtr2g103410.2 | polygalacturonase | HC | chr2:44519609-44523183 |
20130731
Length = 333
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 24 FDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGPCKAPME 80
+ FG +G + TQAF+ VW+ C+ + I+ P K + + +D+ GPC++ +
Sbjct: 59 LSIADFGARGDGFHNDTQAFLKVWEIACSLSGFINIVFPYQKTFLVTPIDIGGPCRSKIT 118
Query: 81 VQVDGTIEAPIDPAQLDG--NYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCK 133
+++ G I AP +P G +W+ F +N ++ G G DG G+ W ++ CK
Sbjct: 119 LRILGAIVAPRNPDVWHGLNKRKWIYFHGVNHLSVEGGGRIDGMGQEWWSRS-CK 172
>Medtr2g103410.1 | polygalacturonase | HC | chr2:44519609-44523183 |
20130731
Length = 451
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 24 FDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGPCKAPME 80
+ FG +G + TQAF+ VW+ C+ + I+ P K + + +D+ GPC++ +
Sbjct: 59 LSIADFGARGDGFHNDTQAFLKVWEIACSLSGFINIVFPYQKTFLVTPIDIGGPCRSKIT 118
Query: 81 VQVDGTIEAPIDPAQLDG--NYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCK 133
+++ G I AP +P G +W+ F +N ++ G G DG G+ W ++ CK
Sbjct: 119 LRILGAIVAPRNPDVWHGLNKRKWIYFHGVNHLSVEGGGRIDGMGQEWWSRS-CK 172
>Medtr2g032710.2 | polygalacturonase plant-like protein | HC |
chr2:12319301-12315408 | 20130731
Length = 463
Score = 61.2 bits (147), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 23 VFDVTKFGVNSNGDI--TQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKAPME 80
VFDV FG +GD T AF A WK CA S + N +K+ GPCK +
Sbjct: 66 VFDVRSFGAVGDGDADDTAAFRAAWKAACAVDSGVLLAPENYCFKITSTIFSGPCKPGLV 125
Query: 81 VQVDGTIEAPIDP---AQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
Q+DGT+ AP P + D QW+ F L+ TL+G G +G GE W
Sbjct: 126 FQIDGTLMAPDGPNCWPEADSKSQWLVFYRLDQMTLNGTGIIEGNGEQWW 175
>Medtr2g032710.1 | polygalacturonase plant-like protein | HC |
chr2:12322300-12315408 | 20130731
Length = 463
Score = 61.2 bits (147), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/110 (39%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 23 VFDVTKFGVNSNGDI--TQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKAPME 80
VFDV FG +GD T AF A WK CA S + N +K+ GPCK +
Sbjct: 66 VFDVRSFGAVGDGDADDTAAFRAAWKAACAVDSGVLLAPENYCFKITSTIFSGPCKPGLV 125
Query: 81 VQVDGTIEAPIDP---AQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAW 127
Q+DGT+ AP P + D QW+ F L+ TL+G G +G GE W
Sbjct: 126 FQIDGTLMAPDGPNCWPEADSKSQWLVFYRLDQMTLNGTGIIEGNGEQWW 175
>Medtr8g065010.1 | polygalacturonase plant-like protein | HC |
chr8:27299002-27295111 | 20130731
Length = 521
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 19 AQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGP-C 75
S F+V FG +G D T+AF A W C + + ++ + + + + GP C
Sbjct: 102 GSSTTFNVLDFGAKGDGRSDDTKAFEATWGAACKVEASTMLIPADYTFYVGPIVFSGPYC 161
Query: 76 KAPMEVQVDGTIEAPIDP-AQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWK 128
K + QVDGTI AP + A G QW+ F L FT+ G G FDG+G W+
Sbjct: 162 KPRIIFQVDGTIIAPTNSNAWGRGLLQWLDFTKLVGFTIQGNGIFDGRGSVWWQ 215
>Medtr7g035415.1 | polygalacturonase | LC | chr7:13555483-13559381 |
20130731
Length = 334
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 20 QSRVFDVTKFGVNSNG--DITQAFIAVWKEGC-ASTSPSKILIP-NGKYKLEQVDLRGPC 75
+ ++DV + G +G D T AF+ W C A + ++IP N + + + L G C
Sbjct: 36 HTNIYDVMQHGARGDGKSDDTNAFLKAWSSTCGAGGILATLVIPKNKSFLVNNLVLTGGC 95
Query: 76 KA-PMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSG--VGTFDGQGEAAWKQNDC 132
KA + +++DG I AP A D +Y W+R Y+N T+ G G+ +G G W+ C
Sbjct: 96 KATSIHIKLDGKIVAPAKGALKDKSY-WIRIQYINHLTIDGGIGGSIEGYGSTWWQCKTC 154
Query: 133 KK 134
+
Sbjct: 155 SR 156
>Medtr3g054320.1 | polygalacturonase/glycoside hydrolase family
protein | LC | chr3:21549576-21552288 | 20130731
Length = 401
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 20/140 (14%)
Query: 8 ALFLLLVSAANAQS-----------RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSP 54
+L++LL+ ++S FDV +G +G D + AF+ + + C +
Sbjct: 3 SLYILLIFVVASRSLYATTITSNTNSTFDVLTYGAIGDGQTDDSNAFLKAFHDVCGTIEG 62
Query: 55 SKIL-IPNGK-YKLEQVDLRGPCK-APMEVQVDGTIEAPIDPA----QLDGNYQWVRFGY 107
++ + IPNGK + L+ + GPCK + +++ G+I AP D D W+RF
Sbjct: 63 TRTMTIPNGKTFLLQPLSFNGPCKPGTITIEIKGSITAPKDVKLWKFSSDRKNVWIRFSE 122
Query: 108 LNFFTLSGVGTFDGQGEAAW 127
+N ++G G DGQG + W
Sbjct: 123 INDLIVNGKGDIDGQGSSWW 142
>Medtr8g008765.1 | polygalacturonase | LC | chr8:1861927-1866353 |
20130731
Length = 346
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 9/123 (7%)
Query: 12 LLVSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQ 68
L V NA +++V ++G + +G D +QAFI + C +T S ++IP GK + + +
Sbjct: 22 LNVGTTNA---IYNVMQYGAHGDGKTDDSQAFINAFNSACKATGMSTLVIPAGKTFMVSK 78
Query: 69 VDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTL--SGVGTFDGQGEAA 126
V G C A + +Q++G I AP A W Y+N T+ +G G DG G
Sbjct: 79 VIFSGRCNAKVRIQLEGQIVAP-SKANSKAQSYWFTIEYVNGLTIDGNGQGGLDGDGSTW 137
Query: 127 WKQ 129
W+
Sbjct: 138 WES 140
>Medtr1g052315.1 | endo polygalacturonase | HC |
chr1:21186740-21183250 | 20130731
Length = 449
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 22 RVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGKYKLEQVDLRGPCKA-P 78
+ F+V ++G +G D T+AF VW+ C+S S +++ Y ++ + GPCK+
Sbjct: 62 KTFNVDQYGAQGDGKTDDTKAFKKVWQVACSSKG-SVVVLAQKNYLVKPITFSGPCKSKS 120
Query: 79 MEVQVDGTIEAPIDPAQLDGN-YQWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCK--KR 135
+ VQ+ G++ A +P+ + W+ F + ++ G GT G G W QN CK K+
Sbjct: 121 IVVQISGSLVASDNPSDYKQDPTHWLMFDSVQKLSVKGGGTIHGNGNIWW-QNSCKTNKK 179
Query: 136 WNCKK 140
CK+
Sbjct: 180 LPCKE 184
>Medtr8g010090.1 | polygalacturonase/glycoside hydrolase family
protein | LC | chr8:2553377-2556933 | 20130731
Length = 389
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 1 MLNIITSALFLLLVSAA-------NAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCAS 51
M I AL L VS ++ +++V ++G +G D QAF++ + C +
Sbjct: 1 MQGFIALALILGFVSPCLCTRMNVGTENAIYNVIQYGARGDGITDDLQAFVSAFSSACKA 60
Query: 52 TSPSKILIPNG-KYKLEQVDLRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNF 110
S ++IP G KY + + + G C A + +Q++G I AP A Y W+ Y++
Sbjct: 61 AGMSTLIIPAGKKYMVSKANFSGRCSARVLIQLEGQIVAPSRAAWKSKLY-WISVEYVDE 119
Query: 111 FTLSG--VGTFDGQGEAAWKQNDCKK 134
T+ G G F G G W+ C +
Sbjct: 120 LTIDGNNKGGFHGGGPTWWQCPTCDR 145
>Medtr3g084380.1 | polygalacturonase/glycoside hydrolase family
protein | LC | chr3:38095209-38097944 | 20130731
Length = 396
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 17/136 (12%)
Query: 11 LLLVSAANAQSRV-------FDVTKFGVNSNG--DITQAFIAVWKEGCA-STSPSKILIP 60
+L++++ + SR+ FDV +G +G D + AF+ V+ + C S S + IP
Sbjct: 1 MLVIASHSVSSRITPNTGSTFDVLTYGAIGDGQTDDSNAFLKVFNDACGTSESTPSMTIP 60
Query: 61 NGK-YKLEQVDLRGPCKAP-MEVQVDGTIEAPIDPAQLDGNYQ-----WVRFGYLNFFTL 113
GK + L+ + +GPCK+ + V++ G I AP D + + W++F ++ +
Sbjct: 61 EGKTFLLQPLVFKGPCKSTNIIVELKGNITAPKDIESWNFTVEKQRKIWIQFSKISGLVV 120
Query: 114 SGVGTFDGQGEAAWKQ 129
+G G DGQG W +
Sbjct: 121 NGEGNIDGQGSPWWDK 136
>Medtr2g060350.1 | polygalacturonase | HC | chr2:24855141-24858654 |
20130731
Length = 444
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 26 VTKFGVNSNG-DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGPCKAPMEVQV 83
V FG ++G D +AF W E C+ +++P + Y+L+ + GPC+ +
Sbjct: 76 VDDFGARADGRDDWEAFKKAWNEACSKGYV--LVVPKNRIYRLKPITFSGPCQPNTAFML 133
Query: 84 DGTIEAPIDPAQLDGNYQ-WVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCK 133
GTIEA + + + Q W+ F ++ F + G GTF+G G+ W +N CK
Sbjct: 134 YGTIEAWSQMSAYEEDRQHWIVFDSVSNFKVDGGGTFNGNGKKWW-ENSCK 183
>Medtr8g010070.1 | polygalacturonase | LC | chr8:2539644-2543850 |
20130731
Length = 390
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 1 MLNIITSALFLLLV-------SAANAQSRVFDVTKFGVNSNGDI--TQAFIAVWKEGCAS 51
M IT AL + S ++ +++V K+G +G I + AF+ W C +
Sbjct: 1 MQGFITFALIFCFILPCLSTRSNVGTKNAIYNVMKYGARGDGKIDDSLAFVRAWNSACKA 60
Query: 52 TSPSKILIPNGK-YKLEQVDLRGPC-KAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLN 109
S ++IP GK + + ++ GPC + +Q++G I AP W+ +
Sbjct: 61 AEMSTLVIPVGKTFMVSKLSFNGPCTNKHILIQLEGKIVAP-SKVHWKAQSYWITVQSVE 119
Query: 110 FFTLSGV--GTFDGQGEAAWKQNDCKK 134
T++G G DG G W+ C +
Sbjct: 120 GLTINGHGRGVLDGDGSTWWQCKSCDR 146
>Medtr8g010050.1 | pectin lyase superfamily protein | LC |
chr8:2530574-2534406 | 20130731
Length = 356
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 7/121 (5%)
Query: 20 QSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVDLRGPC- 75
++ +++V ++G +G D +QAF++ W C + S ++IP GK + + ++ GPC
Sbjct: 27 KNAIYNVMQYGARGDGKTDDSQAFVSAWSSACKAAEMSTLVIPVGKTFMVSKLSFSGPCT 86
Query: 76 KAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTL--SGVGTFDGQGEAAWKQNDCK 133
+ +Q++G I AP +Y W+ + T+ +G G DG G W+ C
Sbjct: 87 NKNILIQLEGKIVAPSKVGWKAQSY-WITVQSVEGLTIEGNGRGVLDGDGSTWWQCKSCA 145
Query: 134 K 134
+
Sbjct: 146 R 146
>Medtr8g010040.1 | polygalacturonase | LC | chr8:2522127-2526378 |
20130731
Length = 388
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 1 MLNIITSALFLLLVSAANAQ--------SRVFDVTKFGVNSNG--DITQAFIAVWKEGCA 50
M N+I L L S Q F+V ++G +G D + AF++ WK CA
Sbjct: 1 MKNLIACILILGFFSPCICQRWNLVGTKKNTFNVMEYGARGDGKSDDSHAFLSAWKSTCA 60
Query: 51 STSPSKILI-PNGKYKLEQVDLRGPCKA-PMEVQVDGTIEAPIDPAQLDGNYQWVRFGYL 108
+ + ++I P K+ + + GPCKA + +++ G I AP + G W+R Y+
Sbjct: 61 AKGAATLVIPPQKKFLVTNLLFSGPCKATSIHIKIQGKIIAPPKKSWKSG-LGWIRIQYV 119
Query: 109 N 109
N
Sbjct: 120 N 120
>Medtr2g029170.1 | endo-polygalacturonase | HC |
chr2:10881421-10882932 | 20130731
Length = 361
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 54 PSKILIPNGKYKLEQVDLRGPC-KAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFT 112
PS I +P+GK+ L +V RG C + + +DGT+ AP D + W+ F ++
Sbjct: 28 PSTIYVPHGKFLLGRVTFRGECTNKDISIIIDGTLVAPSDYHVIGEASYWLTFENVSGVK 87
Query: 113 LSGVGTFDGQGEAAWKQNDCK 133
+ G G DG+G + W DCK
Sbjct: 88 IHG-GVLDGKGTSLW---DCK 104
>Medtr1g013740.1 | polygalacturonase | HC | chr1:3276100-3272148 |
20130731
Length = 390
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 12/133 (9%)
Query: 9 LFLLLVSAANAQSRV------FDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIP 60
+++L++S A+ S V DV +G +G D ++AF+ +K C + +++P
Sbjct: 14 VYILILSIASCNSWVVNGEDTLDVIHYGAKGDGRTDDSKAFVEAFKALCRGRYGNTLVVP 73
Query: 61 NGK--YKLEQVDLRGPCKAP-MEVQVDGTIEAPIDPA-QLDGNYQWVRFGYLNFFTLSGV 116
NG+ + ++ GPC + + +++ G I AP + + W+ F ++ L G
Sbjct: 74 NGRSFFVRPTLNFSGPCHSKNINIKIMGNILAPKRSDWGRECSLYWIHFFNIHGLILDGS 133
Query: 117 GTFDGQGEAAWKQ 129
G +G GE W +
Sbjct: 134 GVINGNGEDWWSK 146
>Medtr8g077320.1 | pectin lyase superfamily protein | LC |
chr8:32921813-32926670 | 20130731
Length = 364
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 31/140 (22%)
Query: 14 VSAANAQSRVFDVTKFGVNSNG--DITQAFIAVWKEGCASTSPSKILIPNGK-YKLEQVD 70
++ A + +F+V +G +G D TQAF+ W C + S ++IP K Y + ++
Sbjct: 23 INVAKTNNNIFNVIAYGARGDGISDDTQAFLRAWNHTCGAEGTSTLVIPPKKLYFVNNLE 82
Query: 71 LRGPCKAPMEVQVDGTIEAPIDPAQLDGNYQWVRFGYLNFFTLSGV--GTFDGQGEAAWK 128
RG CKA + ++ Y+N T+ G G +G G W+
Sbjct: 83 FRGACKATSIL---------------------IQIQYVNGLTIDGTRRGRINGHGSTWWQ 121
Query: 129 QNDCKKR-----WNCKKLSM 143
C + + C LS+
Sbjct: 122 CKSCPRPRILSFYACNDLSV 141
>Medtr3g030540.1 | polygalacturonase | LC | chr3:9670728-9674889 |
20130731
Length = 437
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 16 AANAQSR-VFDVTKFGVNSN-GDI-TQAFIAVWKEGCASTSPSKILI--PNGKYKLEQVD 70
A + QS +V +G SN G + +AF W E C++ K+L+ Y L +
Sbjct: 61 APSPQSHNTVNVNDYGAKSNDGQVDNEAFEMAWNEACSN---GKVLVVPKQSVYHLNPIT 117
Query: 71 LRGPCKAPMEVQVDGTIEA-PIDPAQLDGNYQWVRFGYLNFFTLSGVGTFDGQGEAAWKQ 129
GPC+ +++ GTI+A P A W++F + + G GT +G G W +
Sbjct: 118 FSGPCQPNTALKIYGTIKAWPRISAYGADRKLWIKFENVTNLIVDGGGTINGNGRIWW-E 176
Query: 130 NDCK 133
N CK
Sbjct: 177 NSCK 180
>Medtr0157s0060.1 | polygalacturonase/glycoside hydrolase family
protein | LC | scaffold0157:20596-15247 | 20130731
Length = 365
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 36 DITQAFIAVWKEGCASTSPS-KILIPNGK-YKLEQVDLRGPCK-APMEVQVDGTIEAPID 92
D +Q F+ VW + C S + +L+P+GK + L + RGPC +P+ Q++G I AP
Sbjct: 12 DDSQVFLKVWNDICKRDSDTPTLLVPSGKTFLLNPLKFRGPCSFSPVHFQLEGNIVAPSS 71
Query: 93 P-AQLDGNY-QWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKRW--NCKKLSM 143
A D +Y +W+ F Y++ + G G DGQG WK N C NC L +
Sbjct: 72 SEAWKDEDYTKWIVFYYIHGIIIDGGGQIDGQGSTWWKTN-CSALHIDNCSNLQL 125
>Medtr4g034020.1 | polygalacturonase/glycoside hydrolase family
protein | LC | chr4:12499881-12505230 | 20130731
Length = 365
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 36 DITQAFIAVWKEGCASTSPS-KILIPNGK-YKLEQVDLRGPCK-APMEVQVDGTIEAPID 92
D +Q F+ VW + C S + +L+P+GK + L + RGPC +P+ Q++G I AP
Sbjct: 12 DDSQVFLKVWNDICKRDSDTPTLLVPSGKTFLLNPLKFRGPCSFSPVHFQLEGNIVAPSS 71
Query: 93 P-AQLDGNY-QWVRFGYLNFFTLSGVGTFDGQGEAAWKQNDCKKRW--NCKKLSM 143
A D +Y +W+ F Y++ + G G DGQG WK N C NC L +
Sbjct: 72 SEAWKDEDYTKWIVFYYIHGIIIDGGGQIDGQGSTWWKTN-CSALHIDNCSNLQL 125