Miyakogusa Predicted Gene

Lj1g3v3388970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3388970.1 tr|B4FR04|B4FR04_MAIZE Peptidyl-prolyl cis-trans
isomerase OS=Zea mays PE=2 SV=1,37.5,5e-19,no description,NULL;
seg,NULL; SUBFAMILY NOT NAMED,NULL; PEPTIDYL-PROLYL CIS-TRANS
ISOMERASE,Peptidy,CUFF.30617.1
         (243 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g115970.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ...   335   2e-92
Medtr1g061850.1 | FKBP-type peptidyl-prolyl cis-trans isomerase ...   106   2e-23

>Medtr3g115970.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
           HC | chr3:54219710-54221727 | 20130731
          Length = 228

 Score =  335 bits (860), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 160/197 (81%), Positives = 178/197 (90%), Gaps = 2/197 (1%)

Query: 47  RGVVTVAALSPSQSRRSTAVLISLLPLTVDWLTTPPPAAARERRNKKNIPIDEYLTSPDG 106
           R  + V ALS  QSRRSTA+LIS LP T  +L+ PPPA ARERR KKNIPID+Y+TSPDG
Sbjct: 34  RRALPVVALS--QSRRSTAILISSLPFTFVFLSPPPPAEARERRKKKNIPIDDYITSPDG 91

Query: 107 LKYYDLVEGKGSVAEKGSTVQVHFDCLYRGVTAVSSRESKILAGNRTIAQPYEFKVGAPP 166
           LKYYD +EGKG +AEKGSTVQVHFDCLYRG+TAVSSRESK+LAGNR IAQPYEFKVGAPP
Sbjct: 92  LKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPP 151

Query: 167 GRERKRDFVDNPNGLFSAQASPKPPAAMYTIVEGMRVGGKRTVLVPPENGYGKRGMNEIP 226
           G+ERKR+FVDNPNGLFSAQA+PKPP AMYTIVEGMRVGGKRTV+VPPE GYGK+GMNEIP
Sbjct: 152 GKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEKGYGKKGMNEIP 211

Query: 227 PGATFEMNIELLQVKTT 243
           PGATFE+NIELLQ+ +T
Sbjct: 212 PGATFELNIELLQLAST 228


>Medtr1g061850.1 | FKBP-type peptidyl-prolyl cis-trans isomerase |
           HC | chr1:27011727-27014868 | 20130731
          Length = 257

 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 81/149 (54%), Gaps = 24/149 (16%)

Query: 95  IPIDEYLTSPDGLKYYDLVEGKGSVAEKGSTVQVHFDCLYRGVTAVSSRESKILAGNRTI 154
           IP  ++ T P+GLKYYDL  G G+ A KGS V +H+   +RG+T ++SR+   + G    
Sbjct: 122 IPESDFKTLPNGLKYYDLKVGDGAEAVKGSRVAIHYVAKWRGITFMTSRQGMGVGG---- 177

Query: 155 AQPYEFKVGAPPGRERKRDFVDNPNGLFSAQASPKPPAAMYTIVEGMRVGGKRTVLVPPE 214
             PY F VG                      A       +   VEGMRVGG+R ++VPPE
Sbjct: 178 GTPYGFDVGE--------------------SARGNVLKGLDVGVEGMRVGGQRLLIVPPE 217

Query: 215 NGYGKRGMNEIPPGATFEMNIELLQVKTT 243
             YG RG+ EIPP AT EM+IELL +K +
Sbjct: 218 LAYGSRGVQEIPPNATIEMDIELLAIKQS 246