Miyakogusa Predicted Gene

Lj1g3v3182310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3182310.1 Non Characterized Hit- tr|I1Q1U6|I1Q1U6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,48.28,5e-19,MYB_LIKE,Myb-like domain; HTH_MYB,Myb domain; no
description,Homeodomain-like; SANT  SWI3, ADA2,
N-C,NODE_71482_length_1086_cov_15.684162.path1.1
         (252 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077990.1 | Myb transcription factor-like protein | HC | c...   309   1e-84
Medtr1g076600.1 | cyclin-D-binding Myb-like transcription factor...   166   3e-41
Medtr7g029435.1 | cyclin-D-binding Myb-like transcription factor...   147   1e-35
Medtr3g110028.2 | transcription repressor MYB5 | HC | chr3:50889...    51   1e-06
Medtr3g110028.1 | transcription repressor MYB5 | HC | chr3:50889...    51   1e-06
Medtr1g026870.1 | transcription repressor MYB5 | HC | chr1:88268...    51   1e-06

>Medtr8g077990.1 | Myb transcription factor-like protein | HC |
           chr8:33236002-33231926 | 20130731
          Length = 693

 Score =  309 bits (792), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 148/251 (58%), Positives = 180/251 (71%), Gaps = 14/251 (5%)

Query: 1   MILHCKSHPEVRDCWKEIGAVLPKRPHISVYYRAHILFERDETRKWTPDEFEVLRKLQNQ 60
           M+L+ K HPE              RP+ SVY RAH L E++   KWTP+E E + K   Q
Sbjct: 456 MVLNVKLHPE--------------RPYESVYRRAHTLLEKEGRCKWTPEELEFIEKTYEQ 501

Query: 61  HGSDWKKIAGVLGKHPVHVKDAWRRIRQTDTNKGRWTQDEYQQLFDLVNKDLRARAAEEC 120
           HG+  + +A  LGK    VKDAWRR++ T   KG W+Q+EYQ+LF+LVN DL  RA E  
Sbjct: 502 HGASLRAVADALGKSRAQVKDAWRRLKYTKAKKGHWSQEEYQKLFNLVNLDLLERAKEPY 561

Query: 121 RKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQLTSPMVADGVWSDTDDYRLLNALY 180
           +KS+ GMLRDN+ WEAI +K   RNSA CC KWY+QLTS MVA G W DTDD+RL+NALY
Sbjct: 562 KKSQPGMLRDNICWEAIGHKLETRNSAFCCKKWYEQLTSTMVASGDWCDTDDFRLINALY 621

Query: 181 TLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQYIGQHGTKSFAEQVEILAKRFCPDLLE 240
            LDA  MEEVDWDNL+EHRSGD+ RKRW QM+ +IG+H  KSF EQVE+LAKRFCP+LLE
Sbjct: 622 ALDACCMEEVDWDNLVEHRSGDVCRKRWEQMIHHIGEHAAKSFIEQVEVLAKRFCPNLLE 681

Query: 241 AREAFDSKPVV 251
            REAFD+KPV+
Sbjct: 682 DREAFDNKPVI 692


>Medtr1g076600.1 | cyclin-D-binding Myb-like transcription
           factor-like protein | LC | chr1:34156041-34156783 |
           20130731
          Length = 155

 Score =  166 bits (419), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 86/100 (86%)

Query: 152 KWYKQLTSPMVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQM 211
           KWY+QLTSPMVA G W DTDD+RL+NALY LDA  MEEVDWDNLLEHRSGD+  KRW QM
Sbjct: 55  KWYEQLTSPMVASGDWCDTDDFRLINALYALDACCMEEVDWDNLLEHRSGDVCWKRWEQM 114

Query: 212 VQYIGQHGTKSFAEQVEILAKRFCPDLLEAREAFDSKPVV 251
           + +IG+H  KSF EQVE+LAKRFCP+LLE REAFD+KPV+
Sbjct: 115 IHHIGEHAAKSFIEQVEVLAKRFCPNLLEDREAFDNKPVI 154


>Medtr7g029435.1 | cyclin-D-binding Myb-like transcription
           factor-like protein | HC | chr7:10515703-10515981 |
           20130731
          Length = 92

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/91 (71%), Positives = 78/91 (85%)

Query: 161 MVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQYIGQHGT 220
           MVA G W DTDD+RL+NALY LDA  ME+VDWDNL+EHRSGD+ RKRW QM+ +IG+H  
Sbjct: 1   MVASGDWCDTDDFRLINALYALDACCMEDVDWDNLVEHRSGDVCRKRWEQMIHHIGEHAA 60

Query: 221 KSFAEQVEILAKRFCPDLLEAREAFDSKPVV 251
           KSF +QVE+LAKRFCP+LLE REAFD+KPV+
Sbjct: 61  KSFIDQVEVLAKRFCPNLLEDREAFDNKPVI 91


>Medtr3g110028.2 | transcription repressor MYB5 | HC |
           chr3:50889343-50895792 | 20130731
          Length = 903

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 24/176 (13%)

Query: 40  RDETRKWTPDEFEVLRK-LQNQHGSDWKKIAGVL-GKHPVHVKDAWRRIRQTDTNKGRWT 97
           R    +WTP+E  +LRK ++   G +WKKIA     +  V     W+++   +  KG W+
Sbjct: 30  RSTKGQWTPEEDNILRKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWS 89

Query: 98  QDEYQQLFDLVNKDLRARAAEECRKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQL 157
           ++E + + DLVN              K+G  +    W  I+     R   +C  +W+  L
Sbjct: 90  KEEDETIVDLVN--------------KYGPKK----WSTIAQHLPGRIGKQCRERWHNHL 131

Query: 158 TSPMVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQ 213
            +P +    W+  ++  L++A      Y     +    L  R+ +  +  WN  V+
Sbjct: 132 -NPSINKEAWTQEEELALIHAHQI---YGNRWAELSKFLPGRTDNAIKNHWNSSVK 183


>Medtr3g110028.1 | transcription repressor MYB5 | HC |
           chr3:50889355-50895583 | 20130731
          Length = 903

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 24/176 (13%)

Query: 40  RDETRKWTPDEFEVLRK-LQNQHGSDWKKIAGVL-GKHPVHVKDAWRRIRQTDTNKGRWT 97
           R    +WTP+E  +LRK ++   G +WKKIA     +  V     W+++   +  KG W+
Sbjct: 30  RSTKGQWTPEEDNILRKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELIKGPWS 89

Query: 98  QDEYQQLFDLVNKDLRARAAEECRKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQL 157
           ++E + + DLVN              K+G  +    W  I+     R   +C  +W+  L
Sbjct: 90  KEEDETIVDLVN--------------KYGPKK----WSTIAQHLPGRIGKQCRERWHNHL 131

Query: 158 TSPMVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQ 213
            +P +    W+  ++  L++A      Y     +    L  R+ +  +  WN  V+
Sbjct: 132 -NPSINKEAWTQEEELALIHAHQI---YGNRWAELSKFLPGRTDNAIKNHWNSSVK 183


>Medtr1g026870.1 | transcription repressor MYB5 | HC |
           chr1:8826887-8820780 | 20130731
          Length = 983

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 24/176 (13%)

Query: 40  RDETRKWTPDEFEVLRK-LQNQHGSDWKKIAGVL-GKHPVHVKDAWRRIRQTDTNKGRWT 97
           R    +WTP+E E LRK +Q   G +WKKIA     +  V     W+++   +  KG W+
Sbjct: 30  RSTKGQWTPEEDETLRKAVQRFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWS 89

Query: 98  QDEYQQLFDLVNKDLRARAAEECRKSKHGMLRDNVSWEAISNKFGARNSARCCLKWYKQL 157
           ++E   + +LVN              K+G  +    W  I+     R   +C  +W+  L
Sbjct: 90  KEEDDVMIELVN--------------KYGPKK----WSTIAQHLPGRIGKQCRERWHNHL 131

Query: 158 TSPMVADGVWSDTDDYRLLNALYTLDAYSMEEVDWDNLLEHRSGDMSRKRWNQMVQ 213
            +P +    W+  ++  L+ A      Y  +  +    L  R+ +  +  WN  V+
Sbjct: 132 -NPAINKEAWTQEEELALIRAHQI---YGNKWAELTKFLPGRTDNAIKNHWNSSVK 183