Miyakogusa Predicted Gene
- Lj1g3v3116640.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3116640.2 tr|Q1WK58|Q1WK58_LOTJA CYC1 OS=Lotus japonicus
PE=2 SV=1,90.41,0,TCP,Transcription factor, TCP; seg,NULL;
TCP,Transcription factor TCP subgroup; R,CYC/TB1, R
domain,CUFF.30100.2
(331 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g018500.1 | TCP family transcription factor | HC | chr7:60... 194 8e-50
Medtr6g017055.1 | TCP family transcription factor | HC | chr6:67... 159 4e-39
Medtr1g103380.1 | TCP family transcription factor | HC | chr1:46... 108 6e-24
Medtr4g111935.1 | TCP family transcription factor | HC | chr4:46... 86 4e-17
Medtr8g463380.1 | TCP family transcription factor | HC | chr8:22... 74 2e-13
Medtr2g090960.2 | TCP family transcription factor | HC | chr2:39... 73 3e-13
Medtr2g090960.1 | TCP family transcription factor | HC | chr2:39... 73 3e-13
Medtr4g079580.1 | TCP family transcription factor | HC | chr4:30... 73 4e-13
Medtr2g078200.1 | TCP family transcription factor | HC | chr2:32... 72 5e-13
Medtr6g015350.1 | TCP family transcription factor | HC | chr6:50... 70 3e-12
Medtr7g015010.1 | TCP family transcription factor | HC | chr7:45... 68 2e-11
Medtr4g109660.1 | TCP family transcription factor | HC | chr4:45... 66 4e-11
Medtr3g026050.1 | TCP family transcription factor | HC | chr3:79... 64 2e-10
>Medtr7g018500.1 | TCP family transcription factor | HC |
chr7:6031315-6033168 | 20130731
Length = 374
Score = 194 bits (494), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 165/328 (50%), Gaps = 54/328 (16%)
Query: 40 FLHDPPPLPSVPYXXXXXXXXXXXAPPTCSETFTNWALAD--AMLKQENLTGGPHHHYNL 97
FLHDP SVPY P +T TNWA+AD AMLKQ+ L+G HYNL
Sbjct: 57 FLHDP--TISVPYTQTTHNHV-----PINPDTLTNWAVADYAAMLKQD-LSGS--SHYNL 106
Query: 98 SNFLTRXXXXXXXXXXXDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTL 157
SN LT+ DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTL
Sbjct: 107 SNLLTKKPVKKPAKK--DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTL 164
Query: 158 EWLFSKSNKAIEELFRSKHSDNNNSTGACAAXXXXXXXXXXXXXXXXXXXXXXXKRAQKE 217
EWLF+KS +AIEEL RSK +N S KRAQKE
Sbjct: 165 EWLFNKSKEAIEELTRSK--NNIASGDDDDGDHSFSSSSSDEGDEEDYTKDRKMKRAQKE 222
Query: 218 --KEPSGVQXXXXXXXXXXXXXXXXXTSNKMCPETENPQMQLHQF-SSEFQPHQELHRDD 274
K + + PE + Q LHQ +E + + L RDD
Sbjct: 223 SSKTKDSREKARARARERASEMKMQEDLKEKYPEIDQNQQILHQLMPNEDETSKSLQRDD 282
Query: 275 DFKVFEESIVIKRKLKQSLMSSSHHHQNQNIGIPKEASFN-------------------- 314
F EESIVIKRKLK+ SSSHH+Q IPKEASF+
Sbjct: 283 IFNFIEESIVIKRKLKK---SSSHHYQQNTNLIPKEASFDHDSPMLSPNWDANNNNNDAA 339
Query: 315 ------------NNNNRLQIFGKSWEEC 330
N ++ LQIFGKSWE+C
Sbjct: 340 TGRSNFSAISRMNLSSGLQIFGKSWEDC 367
>Medtr6g017055.1 | TCP family transcription factor | HC |
chr6:6710788-6713192 | 20130731
Length = 409
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 126/316 (39%), Positives = 152/316 (48%), Gaps = 68/316 (21%)
Query: 77 LADAMLKQENLTGGPHHHYNLSNFLTRXXXXXXXXXXXDRHSKIHTSQGLRDRRVRLSIE 136
+A M KQ+ + G HY +S FL + DRHSKI+TSQGLRDRRVRLSIE
Sbjct: 96 IAIPMPKQDPSSLGGGSHYGISCFLAKKPVKK------DRHSKIYTSQGLRDRRVRLSIE 149
Query: 137 IARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEELFRSKHSDNNNSTGACA--------- 187
IARKFFDLQDMLGFDKASNTL+WLF+KS KAI++L +SK +NN+ G A
Sbjct: 150 IARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSKQRNNNSEVGGDAKSFTSSSDC 209
Query: 188 -----AXXXXXXXXXXXXXXXXXXXXXXXKRAQKEKEPSGVQXXXXXXX-XXXXXXXXXX 241
A KR Q KEP+ V+
Sbjct: 210 EDSEIATNNSSNLKQHKEGAGSKHEEKKLKRVQI-KEPACVRASKMKESREKARARARER 268
Query: 242 TSNKMCPETENPQMQL-HQFSSEFQPHQELHRDD----DFKVFEESIVIKRKLKQSLMSS 296
TSNK+ +++L ++ + Q Q+ H + DF V EESIVIKRKLK S+M S
Sbjct: 269 TSNKISNIRGVQEVELKKKYENNLQAFQQDHHSEGPRNDFNVIEESIVIKRKLKPSMMVS 328
Query: 297 SHHHQNQNIG---IPKEA--SFNNNN----------------------NR---------- 319
HHH IPKE+ SFNNN NR
Sbjct: 329 HHHHHPHYHQSHVIPKESSTSFNNNGDFNFLPNSSPNWDANNNGTSSTNRSTFCAIASMN 388
Query: 320 ----LQIFGKSWEECT 331
LQIFGKSWEECT
Sbjct: 389 LSTGLQIFGKSWEECT 404
>Medtr1g103380.1 | TCP family transcription factor | HC |
chr1:46797920-46794627 | 20130731
Length = 489
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 71/101 (70%), Gaps = 3/101 (2%)
Query: 80 AMLKQEN-LTGGPHHHYNLSNFLT--RXXXXXXXXXXXDRHSKIHTSQGLRDRRVRLSIE 136
AM +Q+N G + + NF+ + DRHSKIHTSQGLRDRRVRLS E
Sbjct: 165 AMFEQDNGYNFGVTSSFPIPNFVVTEQKQPATVIGGKKDRHSKIHTSQGLRDRRVRLSSE 224
Query: 137 IARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEELFRSKHS 177
IARKFFDLQDML FDK SNTLEWLF+KS+ AI+EL R+K++
Sbjct: 225 IARKFFDLQDMLEFDKPSNTLEWLFTKSDTAIKELARTKNA 265
>Medtr4g111935.1 | TCP family transcription factor | HC |
chr4:46280786-46279251 | 20130731
Length = 388
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 58/77 (75%), Gaps = 4/77 (5%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEELFRS 174
DRHSKI T++GLRDRR+RLS+E+A++FF LQDMLGF+KAS T++WL ++S I+ L R
Sbjct: 134 DRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKLEIKLLARE 193
Query: 175 KH----SDNNNSTGACA 187
K+ + + +ST C
Sbjct: 194 KNVNFPTKSASSTSECT 210
>Medtr8g463380.1 | TCP family transcription factor | HC |
chr8:22326723-22329800 | 20130731
Length = 433
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 3/74 (4%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEELFRS 174
DRHSK+ T++G RDRRVRLS A +F+D+QD LG+D+ S ++WL K+ AI+EL
Sbjct: 56 DRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDEL--- 112
Query: 175 KHSDNNNSTGACAA 188
H N T C++
Sbjct: 113 AHLPAWNPTATCSS 126
>Medtr2g090960.2 | TCP family transcription factor | HC |
chr2:39078457-39076249 | 20130731
Length = 329
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEEL 171
DRHSK++T++G RDRRVRLS A +F+D+QD LG+D+ S ++WL K+ AI++L
Sbjct: 26 DRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKL 82
>Medtr2g090960.1 | TCP family transcription factor | HC |
chr2:39078457-39075847 | 20130731
Length = 329
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEEL 171
DRHSK++T++G RDRRVRLS A +F+D+QD LG+D+ S ++WL K+ AI++L
Sbjct: 26 DRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKL 82
>Medtr4g079580.1 | TCP family transcription factor | HC |
chr4:30768533-30767465 | 20130731
Length = 335
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEEL 171
DRHSK++TS+G RDRRVRLS A +F+D+QD LG+D+ S ++WL K+ +I++L
Sbjct: 24 DRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKL 80
>Medtr2g078200.1 | TCP family transcription factor | HC |
chr2:32505911-32507609 | 20130731
Length = 294
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEEL 171
DRHSK+ T++G RDRRVRLS A +F+D+QD LGFD+ S L+WL +K+ AI++L
Sbjct: 22 DRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGFDRPSKALDWLINKAKPAIDQL 78
>Medtr6g015350.1 | TCP family transcription factor | HC |
chr6:5010976-5013085 | 20130731
Length = 333
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEEL 171
DRHSK++T +GLRDRRVRLSI+ A +DLQD LG ++ S ++WL + + I+EL
Sbjct: 51 DRHSKVYTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNIAKDEIDEL 107
>Medtr7g015010.1 | TCP family transcription factor | HC |
chr7:4515349-4517203 | 20130731
Length = 351
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEEL 171
DRHSK+ T +GLRDRRVRLS+ A + +DLQD LG ++ S ++WL + + + I++L
Sbjct: 59 DRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKQDIDQL 115
>Medtr4g109660.1 | TCP family transcription factor | HC |
chr4:45588798-45589718 | 20130731
Length = 306
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEEL 171
DRHSK+ T +GLRDRR+RLS+ A + +DLQD LG + S +EWL + I++L
Sbjct: 58 DRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVEWLIEATQSDIDKL 114
>Medtr3g026050.1 | TCP family transcription factor | HC |
chr3:7969037-7970349 | 20130731
Length = 385
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 115 DRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEEL 171
DRHSK+ T +GLRDRR+RLS+ A + +DLQD LG + S ++WL + I++L
Sbjct: 59 DRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKLDIDKL 115