Miyakogusa Predicted Gene
- Lj1g3v3022320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3022320.1 Non Characterized Hit- tr|I1N4J8|I1N4J8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20382 PE,81.42,0,RRM,RNA
recognition motif domain; no description,Nucleotide-binding,
alpha-beta plait; RNA recogniti,CUFF.29891.1
(113 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 181 2e-46
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 181 2e-46
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 172 5e-44
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 144 1e-35
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 138 1e-33
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 134 2e-32
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 134 2e-32
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 124 3e-29
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 122 5e-29
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 108 1e-24
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 92 1e-19
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 92 1e-19
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 87 3e-18
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 86 5e-18
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 84 4e-17
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 82 8e-17
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 2e-16
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 81 2e-16
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 7e-16
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 77 3e-15
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-15
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 8e-15
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-14
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 1e-14
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 75 1e-14
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 4e-14
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 4e-13
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 5e-13
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 67 2e-12
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 4e-12
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-11
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-11
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-11
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-11
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-11
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 64 4e-11
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 63 5e-11
Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 8e-11
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 62 2e-10
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 62 2e-10
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 2e-10
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 2e-10
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 2e-10
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-10
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-10
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-10
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-10
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 3e-10
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-10
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-10
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-10
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 4e-10
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 60 4e-10
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 60 5e-10
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-10
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 9e-10
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 59 1e-09
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 59 1e-09
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 59 1e-09
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-09
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-09
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-09
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 58 2e-09
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 57 3e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-09
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-09
Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa prot... 57 4e-09
Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa prot... 57 4e-09
Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa prot... 57 4e-09
Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa prot... 57 4e-09
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 4e-09
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-09
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 5e-09
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 57 5e-09
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 5e-09
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 6e-09
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-09
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 55 1e-08
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 55 1e-08
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 55 1e-08
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 55 2e-08
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 55 2e-08
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 54 2e-08
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 54 3e-08
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 54 4e-08
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 54 4e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 54 4e-08
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 5e-08
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 6e-08
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 53 6e-08
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-08
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-08
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-08
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 8e-08
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 52 1e-07
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 52 1e-07
Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-07
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 51 2e-07
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 51 2e-07
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-07
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-07
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-07
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 2e-07
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 51 3e-07
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-07
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-07
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 50 3e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 50 4e-07
Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 50 4e-07
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 50 4e-07
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 5e-07
Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 6e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 50 6e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 50 6e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 50 6e-07
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 49 1e-06
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 1e-06
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 49 2e-06
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 48 2e-06
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 2e-06
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 48 2e-06
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 48 2e-06
Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC | c... 48 2e-06
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 3e-06
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 47 3e-06
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 47 3e-06
Medtr5g017130.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 47 3e-06
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 47 3e-06
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 47 3e-06
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC... 47 3e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 47 4e-06
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 1e-05
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 105/113 (92%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAF 60
MAF GK+GKLL+NSAVKHI+ D+S+STPS+FQAIRSMSSAK+F+GG+SYSTD+T LREAF
Sbjct: 1 MAFFGKMGKLLQNSAVKHINHDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAF 60
Query: 61 SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
SRYG+V++AKII+D D+ RSRGFGF+T+ATSE+ASSA+QA+D ++L GR +RV
Sbjct: 61 SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRV 113
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 105/113 (92%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAF 60
MAF GK+GKLL+NSAVKHI+ D+S+STPS+FQAIRSMSSAK+F+GG+SYSTD+T LREAF
Sbjct: 1 MAFFGKMGKLLQNSAVKHINHDLSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAF 60
Query: 61 SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
SRYG+V++AKII+D D+ RSRGFGF+T+ATSE+ASSA+QA+D ++L GR +RV
Sbjct: 61 SRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRV 113
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 172 bits (437), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 102/113 (90%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAF 60
MAF GK+GKLLKNSA++HI+ D+S+STP FQAIRSMSSAK++VGGISYSTDD LRE+F
Sbjct: 1 MAFFGKMGKLLKNSAIQHINHDLSMSTPLAFQAIRSMSSAKLYVGGISYSTDDAGLRESF 60
Query: 61 SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
+RYG+V++A++I+D + RS+GFGFVT+ATSE+AS+A+QA+D Q+LHGR +RV
Sbjct: 61 ARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQAMDNQELHGRTVRV 113
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/116 (60%), Positives = 92/116 (79%), Gaps = 4/116 (3%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSA---KVFVGGISYSTDDTSLR 57
MAF GK+G +L+ + I ++ + PS QAIR M SA K+F+GG+SYSTD+ SLR
Sbjct: 1 MAFFGKLGNILRQGVNRKIVLELRPA-PSALQAIRCMCSAPTTKLFIGGVSYSTDENSLR 59
Query: 58 EAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
EAFSRYGEV++A+II+D ++ RSRGFGF+T+ + E+ASSAIQALDGQDLHGRR+RV
Sbjct: 60 EAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRV 115
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 92/124 (74%), Gaps = 12/124 (9%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSA---KVFVGGI--------SY 49
MAF GK+G +L+ + I ++ + PS QAIR M SA K+F+GGI SY
Sbjct: 1 MAFFGKLGNILRQGVNRKIVLELRPA-PSALQAIRCMCSAPTTKLFIGGILHLSVAGVSY 59
Query: 50 STDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGR 109
STD+ SLREAFSRYGEV++A+II+D ++ RSRGFGF+T+ + E+ASSAIQALDGQDLHGR
Sbjct: 60 STDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGR 119
Query: 110 RIRV 113
R+RV
Sbjct: 120 RVRV 123
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 134 bits (336), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/117 (60%), Positives = 96/117 (82%), Gaps = 4/117 (3%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSV-STPSMFQAIRSMSSA---KVFVGGISYSTDDTSL 56
MAF G++G LL+N+A I+ ++ + S+PS+FQAIR SS K+FVGGISY+TD+ SL
Sbjct: 1 MAFFGRVGSLLRNAANTKITSELKLRSSPSVFQAIRCFSSTPNTKLFVGGISYNTDEQSL 60
Query: 57 REAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
+AFS+YG+V++A+II+D +S RS+GFGFVTY T E+ASSAIQALDGQDL+GRR+ V
Sbjct: 61 SDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRRVGV 117
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 134 bits (336), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/117 (60%), Positives = 96/117 (82%), Gaps = 4/117 (3%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSV-STPSMFQAIRSMSSA---KVFVGGISYSTDDTSL 56
MAF G++G LL+N+A I+ ++ + S+PS+FQAIR SS K+FVGGISY+TD+ SL
Sbjct: 1 MAFFGRVGSLLRNAANTKITSELKLRSSPSVFQAIRCFSSTPNTKLFVGGISYNTDEQSL 60
Query: 57 REAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
+AFS+YG+V++A+II+D +S RS+GFGFVTY T E+ASSAIQALDGQDL+GRR+ V
Sbjct: 61 SDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQALDGQDLYGRRVGV 117
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 89/120 (74%), Gaps = 17/120 (14%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAF 60
MA GK GKLLKNSAV H D+S+S +FQA RSMSSA +F+GGISY+T LR+ F
Sbjct: 1 MALFGKTGKLLKNSAVNH---DLSMS---VFQATRSMSSANLFLGGISYNT----LRKHF 50
Query: 61 SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ-------ALDGQDLHGRRIRV 113
S YG+V++AKII D ++ R RGFGFVT+AT+E+AS+A+Q ++ QDL+GR++RV
Sbjct: 51 SLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTMSLAIKSMKNQDLYGRKVRV 110
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 82/113 (72%), Gaps = 5/113 (4%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAF 60
MAF KIG LL+ A + VS SM +R MSS+K+F+GG+SY+ DD SLR+AF
Sbjct: 1 MAFCNKIGNLLRQGATQSTQAPVS----SMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAF 56
Query: 61 SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
+ YG+V+EA++I D ++ RSRGFGFV + + E A+SA+ ++DGQDL+GR IRV
Sbjct: 57 TTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQDLNGRNIRV 108
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 5/104 (4%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAF 60
MAF KIG LL+ A + VS SM +R MSS+K+F+GG+SY+ DD SLR+AF
Sbjct: 1 MAFCNKIGNLLRQGATQSTQAPVS----SMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAF 56
Query: 61 SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQ 104
+ YG+V+EA++I D ++ RSRGFGFV + + E A+SA+ ++DGQ
Sbjct: 57 TTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL-SMDGQ 99
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 59/73 (80%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+ FVGG++++TD+ +L +AFS+YGE++++KII D ++ RSRGFGFVT+A + + AI+A
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 101 LDGQDLHGRRIRV 113
++GQDL GR I V
Sbjct: 67 MNGQDLDGRNITV 79
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 59/73 (80%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+ FVGG++++TD+ +L +AFS+YGE++++KII D ++ RSRGFGFVT+A + + AI+A
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 101 LDGQDLHGRRIRV 113
++GQDL GR I V
Sbjct: 67 MNGQDLDGRNITV 79
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 61/88 (69%)
Query: 26 STPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGF 85
+ P + +R SS K+F+ G+SY+T++T LR+ F ++G++IE K+I +H + S+G+GF
Sbjct: 19 TLPQLLLCVRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGF 78
Query: 86 VTYATSEDASSAIQALDGQDLHGRRIRV 113
V + + A++A + L GQ + GRRIRV
Sbjct: 79 VRFNSETAAATARKELHGQIVDGRRIRV 106
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 56/73 (76%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+ FVGG++++TD +L +AFS+YGE+I++KII D ++ RSRGFGFVT+A + AI+
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 101 LDGQDLHGRRIRV 113
++GQD+ GR I V
Sbjct: 69 MNGQDMDGRNITV 81
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 55/73 (75%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K+FVGG+S+S D+ SL++AFS +G+V E +I+ D DS R+RGFGFV ++ + A SA A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 101 LDGQDLHGRRIRV 113
+DG+ L GR +R+
Sbjct: 97 MDGKALLGRPLRI 109
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 55/73 (75%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+ FVGG++++TD +L +AFS++GE+ ++K+I D ++ RSRGFGFVT+A + AI+
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 101 LDGQDLHGRRIRV 113
++GQD+ GR I V
Sbjct: 69 MNGQDIDGRNITV 81
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 54/73 (73%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+V VG +++ D+ +L F G+V+EAK+I D +S RSRGFGFVT++++++ SAI+
Sbjct: 197 RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRT 256
Query: 101 LDGQDLHGRRIRV 113
LDG DL+GR IRV
Sbjct: 257 LDGADLNGRAIRV 269
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
++FVG + +S D L E F G+V ++I D + RSRGFGFVT +++ + +A Q
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 101 LDGQDLHGRRIRV 113
L+G + GR +RV
Sbjct: 145 LNGYVVDGRELRV 157
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 54/73 (73%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+V VG +++ D+ +L F G+V+EAK+I D +S RSRGFGFVT++++++ SAI+
Sbjct: 197 RVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRT 256
Query: 101 LDGQDLHGRRIRV 113
LDG DL+GR IRV
Sbjct: 257 LDGADLNGRAIRV 269
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
++FVG + +S D L E F G+V ++I D + RSRGFGFVT +++ + +A Q
Sbjct: 85 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 144
Query: 101 LDGQDLHGRRIRV 113
L+G + GR +RV
Sbjct: 145 LNGYVVDGRELRV 157
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 56/73 (76%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K+FVGG+S+ T + +L +AFS YG+V+EAK+I D S++S+G+GFVT+A+ ++A AI
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 101 LDGQDLHGRRIRV 113
++ + L+GR + V
Sbjct: 93 MNEKALNGRVVFV 105
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 27 TPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFV 86
TP + Q S + +VG + + D++SL + FS +G+V A+++ D ++ RSRGFGFV
Sbjct: 203 TPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFV 262
Query: 87 TYATSEDASSAIQALDGQDLHGRRIRV 113
T + + + AI ALDGQ +GR IRV
Sbjct: 263 TMSNEAEMNDAIAALDGQSFNGRAIRV 289
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K+FVG + + D L + F + G V A++I + D+ RSRGFGFVT +TSE+ A+
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNK 182
Query: 101 LDGQDLHGRRIRV 113
G +L GR + V
Sbjct: 183 FSGFELDGRLLTV 195
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 11/116 (9%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIR---SMSSAKVFVGGISYSTDDTSLR 57
MAF +LL++S +S S F +IR +++S K+F+ G+S T D L
Sbjct: 1 MAFFFGFHRLLRHSQSPLVS--------SHFTSIRLNSTLTSPKLFISGLSRLTTDEKLT 52
Query: 58 EAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
EAFS +G+++EAK+I D S RS+GF FV+Y+T E+A A + ++ + L G I V
Sbjct: 53 EAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGMNAKFLDGWVIFV 108
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 48/71 (67%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
S +FV G+S T +LREAF ++GEV+ A+++ D S S+GFGFV YAT EDA+
Sbjct: 49 PSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKG 108
Query: 98 IQALDGQDLHG 108
I+ +DG+ L G
Sbjct: 109 IEGMDGKFLEG 119
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
++K+FV G+++ST + L EAFS+YG V++A I+++ +R +GFG+VT+A E+A A
Sbjct: 31 TSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQ 90
Query: 99 QALDGQDLHGRRIRV 113
++G+ LHGR + V
Sbjct: 91 IGMNGKILHGRVLYV 105
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 56/78 (71%)
Query: 36 SMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDAS 95
S+ + K+FV G+S+ T + +LR AF +GE++E K+I+D S+RS+G+ F+ Y T E AS
Sbjct: 188 SVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAAS 247
Query: 96 SAIQALDGQDLHGRRIRV 113
+A++ ++G+ ++G I V
Sbjct: 248 AALKEMNGKIINGWMIVV 265
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
Query: 28 PSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVT 87
P F+ + +++V +++ D++ L + FS +G+++ A+++ D ++ RSRGFGFVT
Sbjct: 199 PRTFEPV-----LRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVT 253
Query: 88 YATSEDASSAIQALDGQDLHGRRIRV 113
+ + + AI ALDGQ L GR IRV
Sbjct: 254 MSDETEMNDAIAALDGQSLEGRTIRV 279
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 34 IRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSED 93
+ AK+FVG + D L F + G V A++I + + SRGFGFVT +T E+
Sbjct: 103 VEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEE 162
Query: 94 ASSAIQALDGQDLHGRRIRV 113
A SA++ +G D +GR + V
Sbjct: 163 AESAVEKFNGYDYNGRSLVV 182
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
VFV G++ T +LREAF ++GEV + +++ D S S+GFG+V YATSEDA+ IQ +
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 102 DGQDLHG 108
DG+ L G
Sbjct: 106 DGKFLEG 112
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 54/86 (62%)
Query: 28 PSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVT 87
P + + + K+FVG ++++ SL +AF +G V+ A+++ D ++ +SRG+GFV+
Sbjct: 192 PKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVS 251
Query: 88 YATSEDASSAIQALDGQDLHGRRIRV 113
YAT + +A+ +D +L GR +RV
Sbjct: 252 YATKSEMDTALAIMDNVELEGRTLRV 277
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K++ G + YS D L YG +++ D D+ +SRGF FVT + ED ++ IQ
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 101 LDGQDLHGRRIRV 113
LDG++ GR +RV
Sbjct: 174 LDGKEFMGRTLRV 186
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+++V G+S+ T + SLR AF +G++++ +++D + R RGF F+ YAT E++ AI+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 101 LDGQDLHGRRIRV 113
+ G+ L GR I V
Sbjct: 156 MHGKFLDGRVIFV 168
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
S K++ G + + + LR+AF ++ AKII + D+ RSRGFGFVT+ T+E +A
Sbjct: 210 SPHKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAA 269
Query: 98 IQALDGQDLHGRRIRV 113
+ A++G ++ GR +R+
Sbjct: 270 LNAMNGVEVQGRPLRL 285
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
+ +++VG + +S + L + F+ G V+ +I+ D + RSRGF FVT ++E+A AI
Sbjct: 108 AGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAI 167
Query: 99 QALDGQDLHGRRIRV 113
+ DG + GR +V
Sbjct: 168 RMFDGSQVGGRSAKV 182
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 48/66 (72%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
++K+FV G+++ST + L EAFS+YG V++A I+++ +R +GFG+VT+A E+A A
Sbjct: 31 TSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQ 90
Query: 99 QALDGQ 104
++G+
Sbjct: 91 IGMNGK 96
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
KVFVGG+++ T +LRE F +YG+++EA II D + RS+G+GFVT+ +DA SA +A
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTF---KDADSAKKA 75
Query: 101 LDGQD--LHGRR 110
+ ++GRR
Sbjct: 76 CEEPTVIINGRR 87
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 44/64 (68%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+++V G+S+ T + SLR AF +G++++ +++D + R RGF F+ YAT E++ AI+
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 101 LDGQ 104
+ G+
Sbjct: 156 MHGK 159
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 5/72 (6%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
KVFVGG+++ T +LRE F +YG+++EA II D + RS+G+GFVT+ +DA SA +A
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTF---KDADSAKKA 75
Query: 101 LDGQD--LHGRR 110
+ ++GRR
Sbjct: 76 CEEPTVIINGRR 87
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 32 QAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATS 91
Q S S ++FVG + +S + L + F G V+ +I+ D + RSRGF FVT
Sbjct: 100 QEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNV 159
Query: 92 EDASSAIQALDGQDLHGRRIRV 113
EDA AI+ DG + GR I+V
Sbjct: 160 EDAEEAIRMFDGTTVGGRAIKV 181
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 50/76 (65%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
S K++ G + + LR+AF++ ++ AK++ + ++ +SRG+GFV++ T+ED A
Sbjct: 205 SPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVA 264
Query: 98 IQALDGQDLHGRRIRV 113
+ A++G ++ GR +R+
Sbjct: 265 LSAMNGVEVQGRPLRL 280
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 32 QAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATS 91
Q S S ++FVG + +S + L + F G V+ +I+ D + RSRGF FVT
Sbjct: 100 QEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNV 159
Query: 92 EDASSAIQALDGQDLHGRRIRV 113
EDA AI+ DG + GR I+V
Sbjct: 160 EDAEEAIRMFDGTTVGGRAIKV 181
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 50/76 (65%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
S K++ G + + LR+AF++ ++ AK++ + ++ +SRG+GFV++ T+ED A
Sbjct: 205 SPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVA 264
Query: 98 IQALDGQDLHGRRIRV 113
+ A++G ++ GR +R+
Sbjct: 265 LSAMNGVEVQGRPLRL 280
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 28 PSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVT 87
P F+ + +++V +++ D++ L + FS +G+++ A+++ D ++ RSRGFGFVT
Sbjct: 199 PRTFEPV-----LRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVT 253
Query: 88 YATSEDASSAIQALDGQ 104
+ + + AI ALDGQ
Sbjct: 254 MSDETEMNDAIAALDGQ 270
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 34 IRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSED 93
+ AK+FVG + D L F + G V A++I + + SRGFGFVT +T E+
Sbjct: 103 VEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEE 162
Query: 94 ASSAIQALDGQDLHGRRIRV 113
A SA++ +G D +GR + V
Sbjct: 163 AESAVEKFNGYDYNGRSLVV 182
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 29 SMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTY 88
+M Q ++ + ++VGG++ +++ L AF +G++ + K +D +Q+ R FGFVT+
Sbjct: 2 AMMQGVQKNT---LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTF 58
Query: 89 ATSEDASSAIQALDGQDLHGRRIRV 113
EDAS+A+ +DG +L+GR + V
Sbjct: 59 LEREDASAAMDNMDGAELYGRVLTV 83
>Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:30368066-30365046 | 20130731
Length = 149
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 47/75 (62%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
++K+ V + Y T + +L++ FS +G++ E +++ D ++RS+G F+ Y +DA A+
Sbjct: 38 ASKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAMLAL 97
Query: 99 QALDGQDLHGRRIRV 113
+ +D Q +GR I V
Sbjct: 98 ETMDQQSFYGRTISV 112
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
SS K+F+ G+ ST + L + FS +GEV + K+++D + +S GF ++ + + A SA
Sbjct: 69 SSTKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSA 128
Query: 98 IQALDGQDLHGRRIRV 113
+ ++G+ +GR I V
Sbjct: 129 AKEMNGKLFYGRFIYV 144
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+FV +S+ T L FS +G + EA +I D ++QR +GFGFV+Y + +A A +
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 100 ALDGQDLHGRRIRV 113
AL+G+ + GR I V
Sbjct: 67 ALNGRIVDGRLIFV 80
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 7 IGKLLKNSAVKHISQ-DVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGE 65
+ K++++S + + Q ++ + P + + K+FVGGI + + R+ F+RYGE
Sbjct: 99 VDKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGE 158
Query: 66 VIEAKIIVDHDSQRSRGFGFVTYATSE 92
V + +I+ DH + RSRGFGFVT+ T E
Sbjct: 159 VKDHQIMRDHSTNRSRGFGFVTFDTEE 185
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYA 89
S K+F+GG++ T + F +YGE+ ++ I+ D + + RGFGF+TYA
Sbjct: 43 SPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYA 94
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYA 89
K+F+GGIS+ TD+ L+E F+ YGEVIEA I+ D + R+RGFGFV ++
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFS 55
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 12 KNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKI 71
K + + Q+++ T S+ + + K+FVGG+ + ++ + F ++G + + +
Sbjct: 78 KKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVV 137
Query: 72 IVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
+ DH++QR RGFGF+TY SE+A + +L+G+ + V
Sbjct: 138 MYDHNTQRPRGFGFITY-DSEEAVDRVLYKTFHELNGKMVEV 178
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYA 89
K+F+GGIS+ TD+ L+E F+ YGEVIEA I+ D + R+RGFGFV ++
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFS 55
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 21 QDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRS 80
Q+++ T S+ + + K+FVGG+ + ++ + F ++G + + ++ DH++QR
Sbjct: 87 QNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRP 146
Query: 81 RGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
RGFGF+TY SE+A + +L+G+ + V
Sbjct: 147 RGFGFITY-DSEEAVDRVLYKTFHELNGKMVEV 178
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 61.6 bits (148), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V+VGGI L+E R GEV++ +I+ D+ ++GF FVTY E AS AI+
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 100 ALDGQDLHGRRIR 112
L+ + GR+I+
Sbjct: 170 ELNNTEFKGRKIK 182
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 61.6 bits (148), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V+VGGI L+E R GEV++ +I+ D+ ++GF FVTY E AS AI+
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 100 ALDGQDLHGRRIR 112
L+ + GR+I+
Sbjct: 170 ELNNTEFKGRKIK 182
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 61.6 bits (148), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V+VGGI L+E R GEV++ +I+ D+ ++GF FVTY E AS AI+
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 100 ALDGQDLHGRRIR 112
L+ + GR+I+
Sbjct: 170 ELNNTEFKGRKIK 182
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTY 88
S K+F+GGIS+ T++ LRE FS YGEV EA I+ D + R+RGFGFV +
Sbjct: 5 SGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF 54
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K+FVGG++ + ++ ++ F ++G + + ++ DH++QR RGFGF+TY SE+A +
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDQVLL 165
Query: 101 LDGQDLHGRRIRV 113
+L+G+ + V
Sbjct: 166 KTFHELNGKMVEV 178
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 37/50 (74%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTY 88
S K+F+GGIS+ T++ LRE FS YGEV EA I+ D + R+RGFGFV +
Sbjct: 5 SGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF 54
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K+FVGG++ + ++ ++ F ++G + + ++ DH++QR RGFGF+TY SE+A +
Sbjct: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDQVLL 165
Query: 101 LDGQDLHGRRIRV 113
+L+G+ + V
Sbjct: 166 KTFHELNGKMVEV 178
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 60.8 bits (146), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVI-EAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
A +F+G + D+ L + FS +G ++ KI+ D D+ SRGFGF++Y + E + SAI
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
Query: 99 QALDGQDLHGRRIRV 113
+A++GQ L R+I V
Sbjct: 172 EAMNGQYLCNRQITV 186
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 8/77 (10%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
AK+FVGGIS T + +L+ F++YG+V+ + I D ++ RGFGFVT++ D SSA
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFS---DISSAHN 66
Query: 100 ALDGQDLH---GRRIRV 113
AL QD H GR++ V
Sbjct: 67 AL--QDTHAILGRKVEV 81
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
+ K+FVGG+ + + F R+G + + ++ D + R RGFGF+T+ SED+ ++
Sbjct: 116 TKKIFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITF-DSEDSVQSV 174
Query: 99 QALDGQDLHGRRIRV 113
DL+GR++ V
Sbjct: 175 MMRSFHDLNGRQVEV 189
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 60.5 bits (145), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V+VGGI L+E R GEV++ +I+ D+ ++GF FVTY E AS AI+
Sbjct: 110 SEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIE 169
Query: 100 ALDGQDLHGRRIR 112
L+ + GR+I+
Sbjct: 170 ELNNTEFKGRKIK 182
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
M K+F+GGIS+ T++ LR+ F +G+V+EA I+ D + R+RGFGFV +A A
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 97 AI---QALDGQDLHGRR 110
+ +DG+ + ++
Sbjct: 61 VVMEKHVIDGRTVEAKK 77
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 33 AIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSE 92
A + + K+FVGG++ + ++ + F ++G + + ++ DH++QR RGFGF+TY SE
Sbjct: 99 APTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSE 157
Query: 93 DASSAIQALDGQDLHGRRIRV 113
+A + +L+G+ + V
Sbjct: 158 EAVEKVLHKTFHELNGKMVEV 178
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
M K+F+GGIS+ T++ LR+ F +G+V+EA I+ D + R+RGFGFV +A A
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 97 AI---QALDGQDLHGRR 110
+ +DG+ + ++
Sbjct: 61 VVMEKHVIDGRTVEAKK 77
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 33 AIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSE 92
A + + K+FVGG++ + ++ + F ++G + + ++ DH++QR RGFGF+TY SE
Sbjct: 99 APTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSE 157
Query: 93 DASSAIQALDGQDLHGRRIRV 113
+A + +L+G+ + V
Sbjct: 158 EAVEKVLHKTFHELNGKMVEV 178
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
M K+F+GGIS+ T++ LR+ F +G+V+EA I+ D + R+RGFGFV +A A
Sbjct: 1 MDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
Query: 97 AI---QALDGQDLHGRR 110
+ +DG+ + ++
Sbjct: 61 VVMEKHVIDGRTVEAKK 77
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 33 AIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSE 92
A + + K+FVGG++ + ++ + F ++G + + ++ DH++QR RGFGF+TY SE
Sbjct: 99 APTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSE 157
Query: 93 DASSAIQALDGQDLHGRRIRV 113
+A + +L+G+ + V
Sbjct: 158 EAVEKVLHKTFHELNGKMVEV 178
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 60.5 bits (145), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 40/57 (70%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
KVFVGG+++ T ++R F ++G+++EA +I D ++ RS+G+GFVT+ E A A
Sbjct: 30 KVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 86
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 60.1 bits (144), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 44/71 (61%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+FVG +S D +L FS Y +A+++ D + RSRGFGFV++ + +DA SAI L
Sbjct: 149 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 208
Query: 102 DGQDLHGRRIR 112
G+ L R+IR
Sbjct: 209 TGKWLGSRQIR 219
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 59.7 bits (143), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+FVG +S D +L FS Y +A+++ D + RSRGFGFV++ ++A SAI L
Sbjct: 133 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 192
Query: 102 DGQDLHGRRIR 112
G+ L R+IR
Sbjct: 193 TGKWLGSRQIR 203
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 31 FQAIRS----MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFV 86
FQ + S + KVFVGG+++ T ++R F ++G+++EA +I D ++ RS+G+GFV
Sbjct: 16 FQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFV 75
Query: 87 TYATSEDASSAI 98
T+ E A A
Sbjct: 76 TFRDPEAARRAC 87
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K++VG I + + L + +G V +A+++ D S+RSR F FVT T EDA++A +
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 101 LDGQDLHGRRIRV 113
L+G ++ GR I+V
Sbjct: 121 LNGTEIGGREIKV 133
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
S KV+VG ++ + SL++ FS G + AK+ + +S GFGFVT+++ ED +A
Sbjct: 157 SPYKVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAA 216
Query: 98 IQALDGQDLHGRRIRV 113
I + + L G++IRV
Sbjct: 217 ISSFNNALLEGQKIRV 232
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+FVGG+++ T +L+ F ++G+++EA +I D + +S+G+GFVT+ +D +SAI
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSAIL 82
Query: 100 ALDGQD--LHGRR 110
A + + GRR
Sbjct: 83 ACQNPNPMIDGRR 95
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+FVGG+++ T +L+ F ++G+++EA +I D + +S+G+GFVT+ +D +SAI
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSAIL 82
Query: 100 ALDGQD--LHGRR 110
A + + GRR
Sbjct: 83 ACQNPNPMIDGRR 95
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 58.9 bits (141), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
VFVG +S D +L FS Y +A+++ DH + RS+G+GFV++ +DA SAI +
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 102 DGQDLHGRRIR 112
G+ L R+IR
Sbjct: 191 TGKWLGNRQIR 201
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
VFVG +S D +L FS Y +A+++ DH + RS+G+GFV++ +DA SAI +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 102 DGQDLHGRRIR 112
G+ L R+IR
Sbjct: 207 TGKWLGNRQIR 217
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 58.5 bits (140), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
VFVG +S D +L FS Y +A+++ DH + RS+G+GFV++ +DA SAI +
Sbjct: 147 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 206
Query: 102 DGQDLHGRRIR 112
G+ L R+IR
Sbjct: 207 TGKWLGNRQIR 217
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
KVFVGG+++ T +R F ++G+++EA II D ++ +S+G+GFVT+ E A A A
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRAC-A 75
Query: 101 LDGQDLHGRRIRV 113
+ GRR
Sbjct: 76 DPNPVIDGRRANC 88
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 18 HISQDVSVSTPSMFQAIRS-----MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKII 72
+I QD V P + A+R+ +S K+F+ G+ + T LR FS YGE+ EA +I
Sbjct: 46 NILQDAVVRHPDVLSAVRAVVDPDISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVI 105
Query: 73 VDHDSQRSRGFGFVTY 88
VD + +S+G+GFVT+
Sbjct: 106 VDKATGKSKGYGFVTF 121
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+FVGG+++ T +L+ F ++G+++EA +I D + +S+G+GFVT+ +D +SAI
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSAIL 82
Query: 100 ALDGQD--LHGRR 110
A + + GRR
Sbjct: 83 ACQNPNPMIDGRR 95
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+FVGG+++ T +L+ F ++G+++EA +I D + +S+G+GFVT+ +D +SAI
Sbjct: 26 TKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTF---KDPNSAIL 82
Query: 100 ALDGQD--LHGRR 110
A + + GRR
Sbjct: 83 ACQNPNPMIDGRR 95
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+FVGG+++ T ++R F ++GE++EA +I D + RS+G+GFVT+ E A A Q
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQ 84
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+FVGG+++ T ++R F ++GE++EA +I D + RS+G+GFVT+ E A A Q
Sbjct: 26 KLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQ 84
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
R ++VF+GG+ T D +RE G+++E K+I D ++ S+G+ FV Y T E A
Sbjct: 99 RPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVA 158
Query: 95 SSAIQALDGQDLHGRRIR 112
AI + ++ G+ +R
Sbjct: 159 QKAIDDIHNKEFKGKTLR 176
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
R ++VF+GG+ T D +RE G+++E K+I D ++ S+G+ FV Y T E A
Sbjct: 99 RPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVA 158
Query: 95 SSAIQALDGQDLHGRRIR 112
AI + ++ G+ +R
Sbjct: 159 QKAIDDIHNKEFKGKTLR 176
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
R ++VF+GG+ T D +RE G+++E K+I D ++ S+G+ FV Y T E A
Sbjct: 99 RPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVA 158
Query: 95 SSAIQALDGQDLHGRRIR 112
AI + ++ G+ +R
Sbjct: 159 QKAIDDIHNKEFKGKTLR 176
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 28 PSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVT 87
P F A VFVG I Y + L+E G VI +++ D ++ + +G+GF
Sbjct: 17 PLDFMAAPQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCE 76
Query: 88 YATSEDASSAIQALDGQDLHGRRIRV 113
Y E A SA + L G +++GR++RV
Sbjct: 77 YTDEETALSARRNLQGYEINGRQLRV 102
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 7 IGKLLKN--SAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYG 64
+GK + N S V ++ +S P + + ++FV + YST + L E FS++G
Sbjct: 866 VGKDVANDKSQVNSTEEEGQLSNPEDKKGVSE--PCRLFVRNLPYSTTEEELEEHFSQFG 923
Query: 65 EVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
V + ++VD D++RS+G F+ ++ E A+ A++ D GR + V
Sbjct: 924 SVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEESDNSIFQGRLLHV 972
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 57.4 bits (137), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 7 IGKLLKN--SAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYG 64
+GK + N S V ++ +S P + + ++FV + YST + L E FS++G
Sbjct: 296 VGKDVANDKSQVNATEEEGQLSNPEDKKGVSE--PCRLFVRNLPYSTTEEELEEHFSQFG 353
Query: 65 EVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
V +A ++VD D++RS+G ++ ++ E A+ A++ D GR + V
Sbjct: 354 SVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEESDNSIFQGRLLHV 402
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
+ SS K+ V +++ + LR+ FS +G++ ++ + + R GF FV Y T ++A
Sbjct: 737 KDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHR--GFAFVEYVTQQEA 794
Query: 95 SSAIQALDGQDLHGRRIRV 113
+A+ AL L+GR + +
Sbjct: 795 QNALTALSSTHLYGRHLVI 813
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
KVFVGG+++ T ++++ F ++GE++EA +I D + RS+G+GFVT+ + A A
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRAC 74
>Medtr8g077840.4 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+FV +SY T ++ ++ F YG + +++ D +S + RG+ F+ Y + D +A +
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 102 DGQDLHGRRIRV 113
DG+ + GRR+ V
Sbjct: 197 DGRKIEGRRVLV 208
>Medtr8g077840.2 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33135909-33130366 |
20130731
Length = 502
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+FV +SY T ++ ++ F YG + +++ D +S + RG+ F+ Y + D +A +
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 102 DGQDLHGRRIRV 113
DG+ + GRR+ V
Sbjct: 197 DGRKIEGRRVLV 208
>Medtr8g077840.3 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+FV +SY T ++ ++ F YG + +++ D +S + RG+ F+ Y + D +A +
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 102 DGQDLHGRRIRV 113
DG+ + GRR+ V
Sbjct: 197 DGRKIEGRRVLV 208
>Medtr8g077840.1 | U1 small nuclear ribonucleoprotein 70 kDa
protein, putative | HC | chr8:33136013-33130173 |
20130731
Length = 502
Score = 56.6 bits (135), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+FV +SY T ++ ++ F YG + +++ D +S + RG+ F+ Y + D +A +
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYKQA 196
Query: 102 DGQDLHGRRIRV 113
DG+ + GRR+ V
Sbjct: 197 DGRKIEGRRVLV 208
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
KVFVGG+++ T ++++ F ++GE++EA +I D + RS+G+GFVT+ + A A
Sbjct: 17 KVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAMRAC 74
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
A +F+ I D L AF +G V+ AK+ VD + S+ FGFV+Y + E A SAI
Sbjct: 349 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 408
Query: 100 ALDGQDLHGRRIRV 113
++G L G++++V
Sbjct: 409 MMNGCQLGGKKLKV 422
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/74 (37%), Positives = 43/74 (58%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
A +F+ I D L AF +G V+ AK+ VD + S+ FGFV+Y + E A SAI
Sbjct: 348 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 407
Query: 100 ALDGQDLHGRRIRV 113
++G L G++++V
Sbjct: 408 MMNGCQLGGKKLKV 421
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 56.6 bits (135), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 48/79 (60%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
+ + +++G + + +D L + F ++GE++ AK+I D + S+G+GFV YA A
Sbjct: 446 KEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMA 505
Query: 95 SSAIQALDGQDLHGRRIRV 113
++AI A++G L GR I V
Sbjct: 506 NNAIVAMNGYRLEGRTIAV 524
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 17 KHISQDVSV----STPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKII 72
HI D V + P + K+FVGGI + + L+ FS++G V+E +II
Sbjct: 79 NHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEII 138
Query: 73 VDHDSQRSRGFGFVTYATSEDASSAIQAL 101
DH ++RSRGFGFV + D+ A+ L
Sbjct: 139 RDHTTKRSRGFGFVVF----DSDKAVDNL 163
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
S K+F+GG++ T + F RYGE+ ++ I+ D + R RGFGF+TYA +
Sbjct: 16 SPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQV 75
Query: 98 IQ 99
IQ
Sbjct: 76 IQ 77
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K+FVGG++ + ++ + F ++G + + ++ DH++QR RGFGF+TY SE+A +
Sbjct: 37 KIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVEKVLH 95
Query: 101 LDGQDLHGRRIRV 113
+L+G+ + V
Sbjct: 96 KTFHELNGKMVEV 108
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
SS K+F+ G+ ST + L + FS +GEV + K+++D + +S GF ++ + + A SA
Sbjct: 69 SSTKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSA 128
Query: 98 IQALDGQ 104
+ ++G+
Sbjct: 129 AKEMNGK 135
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 33 AIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSE 92
++R S VF+ + S D +L + F+ +G V+ K+ +D + Q S+G+GFV + E
Sbjct: 111 SVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQ-SKGYGFVQFDNEE 169
Query: 93 DASSAIQALDGQDLHGRRIRV 113
A SAI+ LDG ++ +++ V
Sbjct: 170 AAKSAIKQLDGMLINDKQVYV 190
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 33 AIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSE 92
++R S VF+ + S D +L + F+ +G V+ K+ +D + Q S+G+GFV + E
Sbjct: 111 SVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQ-SKGYGFVQFDNEE 169
Query: 93 DASSAIQALDGQDLHGRRIRV 113
A SAI+ LDG ++ +++ V
Sbjct: 170 AAKSAIKQLDGMLINDKQVYV 190
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 33 AIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSE 92
+IR +F+ + + D +L + FS +G ++ K+ VD Q S+G+GFV + T E
Sbjct: 115 SIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQ-SKGYGFVQFDTEE 173
Query: 93 DASSAIQALDGQDLHGRRIRV 113
A AI+ L+G L+ +++ V
Sbjct: 174 AAQKAIEKLNGMLLNDKQVYV 194
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 46/75 (61%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
+ ++VG + + D+ L + F++ G+V+ ++ D ++RS G+G+V Y+ +DA+ A+
Sbjct: 33 TTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 92
Query: 99 QALDGQDLHGRRIRV 113
L+ L+ R IR+
Sbjct: 93 DVLNFTPLNNRPIRI 107
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
VFV +S ST D L++ F +G + A ++ D D +S+ FGFV + +++DA+ A++AL
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDG-KSKCFGFVNFESTDDAARAVEAL 273
Query: 102 DGQDL 106
+G+ +
Sbjct: 274 NGKKI 278
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 29 SMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTY 88
SM +A A ++V + S D L+E FS YG + K++ D + SRG GFV +
Sbjct: 305 SMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGV-SRGSGFVAF 363
Query: 89 ATSEDASSAIQALDGQ 104
+T E+AS A+ ++G+
Sbjct: 364 STPEEASRALLEMNGK 379
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 51/89 (57%)
Query: 25 VSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFG 84
+ P+ + ++ ++VG + + +D L + FS+ VI ++ D +Q S G+G
Sbjct: 10 IVVPAALTSAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYG 69
Query: 85 FVTYATSEDASSAIQALDGQDLHGRRIRV 113
+V Y+ + DA++A++ L+ L+G+ IR+
Sbjct: 70 YVNYSNARDAANAMENLNYVPLNGKPIRI 98
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 34 IRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSED 93
IR A +F+ + S D+ +L E FS +G V+ K+ +D + S+G GFV + +
Sbjct: 107 IRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMDSNGH-SKGHGFVQFDNDQS 165
Query: 94 ASSAIQALDGQDLHGRRIRV 113
A +AI+ LDG ++ +++ V
Sbjct: 166 AKNAIEKLDGMLMNDKKVYV 185
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
A +++ I S ++ L+E FS +G + K++ D RS+G GFV + T E+AS AI
Sbjct: 304 ANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSDARG-RSKGVGFVAFTTPEEASKAID 362
Query: 100 ALDGQ 104
++G+
Sbjct: 363 EMNGK 367
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
VFV ++ S D++ L + F ++G ++ +K+++ D +S+G+GFV + T E A++AI+ L
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDG-KSKGYGFVQFETEESANAAIERL 158
Query: 102 DGQDLHGRRIRV 113
+G + ++I V
Sbjct: 159 NGYLVGDKQIYV 170
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
+ ++V I + D LR+ FS G + AKI+ D D S+GFGFV ++T E+A+ A+
Sbjct: 292 SNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVN 350
Query: 100 ALDGQDLHGRRIRV 113
+ G HG+ + V
Sbjct: 351 SFHGFMFHGKPLYV 364
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 36 SMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDAS 95
S + A ++VG + D+ L +AFS + + +I D S +S +G+V + + DA
Sbjct: 6 SATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAI 65
Query: 96 SAIQALDGQDLHGRRIRV 113
AI+ + L+G+ IRV
Sbjct: 66 RAIEVKNHSTLNGKAIRV 83
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
+ A +++ + S +D L+E FS +G + K++ D S+GFGFV ++TSE+AS
Sbjct: 206 LQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAHGH-SKGFGFVAFSTSEEASK 264
Query: 97 AIQALDGQ 104
AI + G+
Sbjct: 265 AINGMSGK 272
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 33 AIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSE 92
+IR A VFV + S D+ L + F+ +G V+ K+ +D + +S G+GFV Y E
Sbjct: 8 SIRKTGFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSNG-KSLGYGFVQYDNHE 66
Query: 93 DASSAIQALDG 103
A AI+ LDG
Sbjct: 67 SAKCAIEKLDG 77
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 53.9 bits (128), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 24 SVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGF 83
S TPS Q+ ++ +FVGG+ S LR+ FS+YGE++ KI V +G
Sbjct: 278 SNGTPS--QSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPV------GKGC 329
Query: 84 GFVTYATSEDASSAIQALDGQDLHGRRIRV 113
GFV +A +A A+Q L+G + + +R+
Sbjct: 330 GFVQFANRNNAEEALQKLNGTTVGKQTVRL 359
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 42 VFVGGISYSTDDTSLREAFS-RYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+FVG ++ DT L E FS +Y V AK++ D ++ RS+G+GFV + + S A+
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 101 LDGQDLHGRRIRV 113
++G R +R+
Sbjct: 249 MNGVFCSSRAMRI 261
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 4 IGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSA-----KVFVGGISYSTDDTSLRE 58
I KI + + + Q S+ P + A+RS++ K+FV G+S T +LR
Sbjct: 35 IRKILQPFTQEQLLDLLQSASLQHPDILDAVRSVADRDTTRRKLFVRGLSGETTTETLRT 94
Query: 59 AFSRYGEVIEAKIIVDHDSQRSRGFGFVTY 88
FS YG++ EA +I D + RS+G+GFV Y
Sbjct: 95 VFSSYGDLDEAIVIFDKATGRSKGYGFVVY 124
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
+SS KVFVG + + SL FS+YGE+ E + D S ++RGF F Y T E A +
Sbjct: 160 VSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKN 219
Query: 97 AI 98
++
Sbjct: 220 SV 221
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 1 MAFIGKIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAF 60
+ + +I ++ A +IS+D S T + SA VFVGGI + + + F
Sbjct: 4 LTLVKRIQQINSREAALNISEDASWHT-------KYKDSAYVFVGGIPFDFTEGDVIAVF 56
Query: 61 SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
++YGEV++ ++ D + +S+GF F+ Y + A+ L+G + GR IRV
Sbjct: 57 AQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNLNGAQVSGRIIRV 109
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 32 QAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATS 91
+ ++ M S ++V I S D LR+ FS GEV+ AK++ D D S+GFGFV ++T
Sbjct: 286 KGLKHMGS-NIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRD-DKGTSKGFGFVCFSTV 343
Query: 92 EDASSAIQALDGQDLHGRRIRV 113
+A ++ +G HG+ + V
Sbjct: 344 VEAFKSMSCFNGCMFHGKPLYV 365
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
R VFV ++ S D+ L + F +YG ++ +KI D +S+GFG++ + + E A
Sbjct: 98 RKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDG-KSKGFGYIQFDSEESA 156
Query: 95 SSAIQALDGQDLHGRRIRV 113
+ AIQ ++G + ++I V
Sbjct: 157 NVAIQKMNGSTVRDKQIYV 175
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 27 TPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFV 86
T S A+ + +A ++VG + D L +AFS + +I A++ D + +S +G+V
Sbjct: 2 TDSEKDAVPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYV 61
Query: 87 TYATSEDASSAIQALDGQDLHGRRIRV 113
++ ++A AI+ + L+G+ IRV
Sbjct: 62 NLSSHQEAIRAIELKNHSSLNGKVIRV 88
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 53.5 bits (127), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 36 SMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDAS 95
+M + K+FVGG+ + + R+ F YG V + ++ D ++ R RGFGF+T+ T E+A
Sbjct: 108 NMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDT-EEAV 166
Query: 96 SAIQALDGQDLHGRRIRV 113
+ DL+G+++ V
Sbjct: 167 DRVLHKTFHDLNGKQVEV 184
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+F+GGIS+ T++ L+E FS YG+V+ ++ + ++ + RGFGFV ++ ++
Sbjct: 6 GKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE 65
Query: 100 ---ALDGQDLHGRR 110
+DG+ + +R
Sbjct: 66 DKHVIDGRTVDAKR 79
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 53.5 bits (127), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 36 SMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDAS 95
+M + K+FVGG+ + + R+ F YG V + ++ D ++ R RGFGF+T+ T E+A
Sbjct: 108 NMRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDT-EEAV 166
Query: 96 SAIQALDGQDLHGRRIRV 113
+ DL+G+++ V
Sbjct: 167 DRVLHKTFHDLNGKQVEV 184
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
K+F+GGIS+ T++ L+E FS YG+V+ ++ + ++ + RGFGFV ++ ++
Sbjct: 6 GKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLE 65
Query: 100 ---ALDGQDLHGRR 110
+DG+ + +R
Sbjct: 66 DKHVIDGRTVDAKR 79
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
M K+ V GI + D L+E S+YGE+ + ++ + + RSRGFG+VT+A+ +DA
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK- 59
Query: 97 AIQALDGQDLHGRRI 111
+ L G+ + G R+
Sbjct: 60 --EVLSGEHVLGDRM 72
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 52.8 bits (125), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 47/77 (61%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
+++ ++VG + + D+ L + F++ G+V+ +I D SQ+S G+G+V ++ DA+
Sbjct: 21 LTTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAK 80
Query: 97 AIQALDGQDLHGRRIRV 113
A+ L+ L+ + IR+
Sbjct: 81 AMDVLNFTPLNNKPIRI 97
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 33 AIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSE 92
++R +A +F+ + + D +L + FS +G ++ KI +D S S+G+GFV + E
Sbjct: 105 SVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEE 163
Query: 93 DASSAIQALDGQDLHGRRIRV 113
A SAI L+G L+ + + V
Sbjct: 164 SAQSAIDKLNGMLLNDKPVYV 184
Score = 48.9 bits (115), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 29 SMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTY 88
SM + + A +++ + S D L E FS +G V KI+ D SRG GFV +
Sbjct: 295 SMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGI-SRGSGFVAF 353
Query: 89 ATSEDASSAIQALDGQDLHGRRIRV 113
+T E+A+ A+ ++G+ + G+ + V
Sbjct: 354 STPEEATRALAEMNGKMVAGKPLYV 378
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
M K+ V GI + D L+E S+YGE+ + ++ + + RSRGFG+VT+A+ +DA
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK- 59
Query: 97 AIQALDGQDLHGRRI 111
+ L G+ + G R+
Sbjct: 60 --EVLSGEHVLGDRM 72
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
M K+ V GI + D L+E S+YGE+ + ++ + + RSRGFG+VT+A+ +DA
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK- 59
Query: 97 AIQALDGQDLHGRRI 111
+ L G+ + G R+
Sbjct: 60 --EVLSGEHVLGDRM 72
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 37 MSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASS 96
M K+ V GI + D L+E S+YGE+ + ++ + + RSRGFG+VT+A+ +DA
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK- 59
Query: 97 AIQALDGQDLHGRRI 111
+ L G+ + G R+
Sbjct: 60 --EVLSGEHVLGDRM 72
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 52.8 bits (125), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V+VGGI L+E GEV++ +I D+ +RGF FVTY + E AS AI+
Sbjct: 350 SEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIK 409
Query: 100 ALDGQDLHGRRIR 112
L+ + +I+
Sbjct: 410 ELNNTEFKAGKIK 422
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V++GGI + T + LR GEV E +++ + ++G+ FVT+ T E AS A++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALK 157
Query: 100 ALDGQDLHGRRIR 112
L+ + GR+I+
Sbjct: 158 ELNNSEFKGRKIK 170
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V++GGI + T + LR GEV E +++ + ++G+ FVT+ T E AS A++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALK 157
Query: 100 ALDGQDLHGRRIR 112
L+ + GR+I+
Sbjct: 158 ELNNSEFKGRKIK 170
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V++GGI + T + LR GEV E +++ + ++G+ FVT+ T E AS A++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALK 157
Query: 100 ALDGQDLHGRRIR 112
L+ + GR+I+
Sbjct: 158 ELNNSEFKGRKIK 170
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
++V++GGI + T + LR GEV E +++ + ++G+ FVT+ T E AS A++
Sbjct: 101 SEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVM---KGKEAKGYAFVTFKTKELASKALK 157
Query: 100 ALDGQDLHGRRIR 112
L+ + GR+I+
Sbjct: 158 ELNNSEFKGRKIK 170
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 52.4 bits (124), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
AK+FVG + + + +R F +G V+E +I D + + +G F+ YATSE+A AI+
Sbjct: 88 AKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 147
Query: 100 AL 101
AL
Sbjct: 148 AL 149
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K+FVG ++ + E FS+YG + + ++ D D ++SRG GFV Y+ + A +AI A
Sbjct: 180 KLFVGSLNKQASVKEVEEVFSKYGRIEDVYLMRD-DQKQSRGCGFVKYSHRDMALAAINA 238
Query: 101 LDG 103
L+G
Sbjct: 239 LNG 241
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
++ +FVGG+ + D L++ FS+YGE+ KI V +G GFV +A +A A
Sbjct: 293 TNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPV------GKGCGFVQFANRNNAEEA 346
Query: 98 IQALDGQDLHGRRIRV 113
+Q L+G + + +R+
Sbjct: 347 LQKLNGTMIGKQTVRL 362
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 42 VFVGGISYSTDDTSLREAFSR-YGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+FVG ++ D+ L E FS Y V AK++ D ++ RS+G+GFV + + S A+
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 101 LDGQDLHGRRIRV 113
++G R +R+
Sbjct: 252 MNGVYCSSRPMRI 264
>Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9166628 | 20130731
Length = 236
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
++V G+S + L E FS+ G+V ++V+ ++ SRGF FVT T+EDA+ I+ L
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 102 DGQDLHGRRIRV 113
+ L GR I V
Sbjct: 193 NQSILEGRYITV 204
>Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9166628 | 20130731
Length = 213
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
++V G+S + L E FS+ G+V ++V+ ++ SRGF FVT T+EDA+ I+ L
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 102 DGQDLHGRRIRV 113
+ L GR I V
Sbjct: 193 NQSILEGRYITV 204
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 7 IGKLLKN--SAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYG 64
+GK + N S V ++ +S P + + ++FV + YST + L E FS++G
Sbjct: 145 VGKDVANDKSQVNATEEEGQLSNPEYKKGVSE--PCRLFVLNLPYSTTEEELEEHFSQFG 202
Query: 65 EVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
V + ++V ++RS+G F+ ++ E A+ A++ + GR +RV
Sbjct: 203 SVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEESNNSIFQGRLLRV 251
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
+ SS K+ V +++ LR+ FS +G++ + K+ + + R GF FV Y T ++A
Sbjct: 581 KDKSSTKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKFGNHR--GFAFVEYVTQQEA 638
Query: 95 SSAIQALDGQDLHGRRIRV 113
+A+ AL L+GR + +
Sbjct: 639 QNALTALSSTHLYGRHLVI 657
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 7 IGKLLKN--SAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYG 64
+GK + N S V ++ +S P + + ++FV + YST + L E FS++G
Sbjct: 159 VGKDVANDKSQVNATEEEGQLSNPEYKKGVSE--PCRLFVLNLPYSTTEEELEEHFSQFG 216
Query: 65 EVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
V + ++V ++RS+G F+ ++ E A+ A++ + GR +RV
Sbjct: 217 SVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEESNNSIFQGRLLRV 265
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
+ SS K+ V +++ LR+ FS +G++ + K+ + + R GF FV Y T ++A
Sbjct: 595 KDKSSTKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKFGNHR--GFAFVEYVTQQEA 652
Query: 95 SSAIQALDGQDLHGRRIRV 113
+A+ AL L+GR + +
Sbjct: 653 QNALTALSSTHLYGRHLVI 671
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 6 KIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGE 65
+I LL +A KH +DV+ + A S K+FV G+ + T +L AFS+YGE
Sbjct: 97 QISSLLCEAASKH--RDVADRIRKI--ADGDASHRKIFVHGLGWDTTSATLINAFSQYGE 152
Query: 66 VIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
+ + K + D S +S+G+GF+ + A +A++
Sbjct: 153 IEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 6 KIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGE 65
+I LL +A KH +DV+ + A S K+FV G+ + T +L AFS+YGE
Sbjct: 97 QISSLLCEAASKH--RDVADRIRKI--ADGDASHRKIFVHGLGWDTTSATLINAFSQYGE 152
Query: 66 VIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
+ + K + D S +S+G+GF+ + A +A++
Sbjct: 153 IEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 6 KIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGE 65
+I LL +A KH +DV+ + A S K+FV G+ + T +L AFS+YGE
Sbjct: 97 QISSLLCEAASKH--RDVADRIRKI--ADGDASHRKIFVHGLGWDTTSATLINAFSQYGE 152
Query: 66 VIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
+ + K + D S +S+G+GF+ + A +A++
Sbjct: 153 IEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 6 KIGKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGE 65
+I LL +A KH +DV+ + A S K+FV G+ + T +L AFS+YGE
Sbjct: 97 QISSLLCEAASKH--RDVADRIRKI--ADGDASHRKIFVHGLGWDTTSATLINAFSQYGE 152
Query: 66 VIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQ 99
+ + K + D S +S+G+GF+ + A +A++
Sbjct: 153 IEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 31 FQAI----RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFV 86
F+AI R ++FVGG+ T + L++ F R GEV+E ++ + + ++RG+ V
Sbjct: 405 FEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVV 464
Query: 87 TYATSEDASSAIQALDGQDLHGRR 110
+A E A A+ + + G+R
Sbjct: 465 RFANKEHAKKALSEMKNPVIRGKR 488
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 42 VFVGGISYSTDDTSLREAF-SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+FV Y ++E F S G+V+ A++I + +R G+GFV+Y + ++A A+
Sbjct: 184 LFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAE 243
Query: 101 LDGQDLHGRRIRV 113
G++ GR +RV
Sbjct: 244 FQGKNFMGRPLRV 256
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 42 VFVGGISYSTDDTSLREAF-SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+FV Y ++E F S G+V+ A++I + +R G+GFV+Y + ++A A+
Sbjct: 184 LFVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAE 243
Query: 101 LDGQDLHGRRIRV 113
G++ GR +RV
Sbjct: 244 FQGKNFMGRPLRV 256
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 31 FQAI----RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFV 86
F+AI R ++FVGG+ T + L++ F R GEV+E ++ + + ++RG+ V
Sbjct: 405 FEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVV 464
Query: 87 TYATSEDASSAIQALDGQDLHGRR 110
+A E A A+ + + G+R
Sbjct: 465 RFANKEHAKKALSEMKNPVIRGKR 488
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
R +A +F+ + + D +L + FS +G+++ KI D Q S+G+GFV + + A
Sbjct: 115 RKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQ-SKGYGFVQFEAEDSA 173
Query: 95 SSAIQALDGQDLHGRRIRV 113
+AI L+G ++ +++ V
Sbjct: 174 QNAIDKLNGMLINDKQVFV 192
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 46/75 (61%)
Query: 39 SAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAI 98
+ ++VG + + +D+ L + F++ G+V+ ++ D ++RS G+G+V + +DA+ A+
Sbjct: 31 TTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAL 90
Query: 99 QALDGQDLHGRRIRV 113
L+ ++ + IRV
Sbjct: 91 DVLNFTPMNNKSIRV 105
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
V+V +S S + L+ F YG + A ++ D D RS+ FGFV + +EDA+ A++AL
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADG-RSKCFGFVNFENAEDAAKAVEAL 271
Query: 102 DGQDL 106
+G+ +
Sbjct: 272 NGKKV 276
>Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512527-46508373 | 20130731
Length = 428
Score = 50.4 bits (119), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRG--FGFVTYATSEDASSA 97
+ ++VGG+ Y D ++R F+ YG +++ KII D QR+ G + FVT+ A A
Sbjct: 7 SSIYVGGLPYGATDETIRTVFNLYGAILDVKIIND---QRTIGKCYCFVTFTNPRSAIDA 63
Query: 98 IQALDGQDLHGRRIRV 113
I ++G+ ++GR ++V
Sbjct: 64 INDMNGRTINGRVVKV 79
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K++VG + ++ + +LRE F +G++ ++ +D ++ +GFGFV +A E A +A Q+
Sbjct: 304 KLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA-QS 362
Query: 101 LDGQ-DLHGRRIRV 113
L+G+ ++ GR I+V
Sbjct: 363 LNGKLEIAGRTIKV 376
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 31 FQAI----RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFV 86
F+AI R ++FVGG+ T + L++ F R GEV+E ++ + + ++RG+ V
Sbjct: 405 FEAIAKQRRIRKEHEIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVV 464
Query: 87 TYATSEDASSAIQALDGQDLHGRR 110
+A E A A+ + + G+R
Sbjct: 465 RFANKEHAKKALSEMKNPVIRGKR 488
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
S K+FV G+ + T +L AFS+YGE+ + K + D S +S+G+GF+ + A +A
Sbjct: 125 SHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
Query: 98 IQ 99
++
Sbjct: 185 LK 186
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
+ S + V +SYS + T + + F GEV++ + D + R RGFG+V + T+E A
Sbjct: 157 KDAPSKTICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDREG-RFRGFGYVEFGTAEAA 215
Query: 95 SSAIQALDGQDLHGRRIRV 113
A++ LD +L RR+RV
Sbjct: 216 KKALK-LDSTELLNRRMRV 233
>Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512521-46508373 | 20130731
Length = 561
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 40 AKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRG--FGFVTYATSEDASSA 97
+ ++VGG+ Y D ++R F+ YG +++ KII D QR+ G + FVT+ A A
Sbjct: 7 SSIYVGGLPYGATDETIRTVFNLYGAILDVKIIND---QRTIGKCYCFVTFTNPRSAIDA 63
Query: 98 IQALDGQDLHGRRIRV 113
I ++G+ ++GR ++V
Sbjct: 64 INDMNGRTINGRVVKV 79
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K++VG + ++ ++ LRE F +G V ++ +D ++ +GFGF+ +A E A +A Q+
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QS 376
Query: 101 LDGQ-DLHGRRIRV 113
L+G+ ++ GR I+V
Sbjct: 377 LNGKLEIAGRTIKV 390
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K++VG + ++ ++ LRE F +G V ++ +D ++ +GFGF+ +A E A +A Q+
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QS 376
Query: 101 LDGQ-DLHGRRIRV 113
L+G+ ++ GR I+V
Sbjct: 377 LNGKLEIAGRTIKV 390
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K++VG + ++ ++ LRE F +G V ++ +D ++ +GFGF+ +A E A +A Q+
Sbjct: 318 KLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QS 376
Query: 101 LDGQ-DLHGRRIRV 113
L+G+ ++ GR I+V
Sbjct: 377 LNGKLEIAGRTIKV 390
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 46/73 (63%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
++F G + +D L +AF+R+ A+++ D + +++G+GF+++A D ++A++
Sbjct: 133 RLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKE 192
Query: 101 LDGQDLHGRRIRV 113
++G+ + R I++
Sbjct: 193 MNGKYVGNRPIKL 205
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 42 VFVGGISYSTDDTSLREAFS-RYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+FVG ++ DT L E FS +Y V AK++ D ++ RS+G+GFV + + S A+
Sbjct: 189 IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNE 248
Query: 101 LDGQDLHGRRIRV 113
++G R +R+
Sbjct: 249 MNGVFCSSRAMRI 261
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+ V I++ T L F +YG+V++ I D + SRGF FV Y +++AS A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 102 DGQDLHGRRIRV 113
DG+ + GR I V
Sbjct: 78 DGRMVDGREITV 89
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+ V I++ T L F +YG+V++ I D + SRGF FV Y +++AS A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 102 DGQDLHGRRIRV 113
DG+ + GR I V
Sbjct: 78 DGRMVDGREITV 89
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+ V I++ T L F +YG+V++ I D + SRGF FV Y +++AS A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 102 DGQDLHGRRIRV 113
DG+ + GR I V
Sbjct: 78 DGRMVDGREITV 89
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+ V I++ T L F +YG+V++ I D + SRGF FV Y +++AS A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 102 DGQDLHGRRIRV 113
DG+ + GR I V
Sbjct: 78 DGRMVDGREITV 89
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
++ +FVGG+ D LR+ F ++G+VI KI V +G GFV A ++A A
Sbjct: 332 NNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPV------GKGCGFVQLADRKNAEEA 385
Query: 98 IQALDGQDLHGRRIRV 113
IQ L+G + + +R+
Sbjct: 386 IQGLNGTVIGKQTVRL 401
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAF-SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSED 93
+ S VFVG ++ D L+E F S++ + AK+++D ++ RS+G+GFV + +
Sbjct: 209 EATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESE 268
Query: 94 ASSAIQALDGQDLHGRRIRV 113
+ A+ ++G R +RV
Sbjct: 269 RTRAMTEMNGVYCSSRPMRV 288
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
R V V +S T + L E F +G V + +D ++ SRGFGFV + EDA
Sbjct: 194 RRNDENSVRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDA 253
Query: 95 SSAIQALDG 103
AI L+G
Sbjct: 254 QRAINKLNG 262
>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:30979896-30974591 | 20130731
Length = 782
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+VFVGG+ + LR+ FS+ GE+ E ++ V+ ++R++GF + + T E A+
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 101 LDGQDLHGRRI 111
L ++G++
Sbjct: 255 LKNPVINGKQC 265
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
++V G+S + L E FS+ G+V ++V+ ++ SRGF FVT T+EDA+ I+ L
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 102 DGQDLHGRRIRV 113
+ L GR I V
Sbjct: 193 NQSILEGRYITV 204
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
++V G+S L + FS G+V++ ++VD ++ SRGFGFVT T E+A ++ L
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 102 DGQDLHGRRIRV 113
+ L GR I V
Sbjct: 107 NRSVLEGRVITV 118
>Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC |
chr2:38808070-38813158 | 20130731
Length = 259
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 38 SSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSA 97
+S V+VG +S+ T + + E F+R GE+ + + +D +++ GF FV Y + ED A
Sbjct: 32 TSTTVYVGNMSFYTTEEQIYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDA 91
Query: 98 IQALDGQDLHGRRIRV 113
+ + G L R IRV
Sbjct: 92 CKYISGTILDDRPIRV 107
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 34 IRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSED 93
I + S +FVG +S+S + + + F GEV++ + D + R +GFG V +A++E
Sbjct: 335 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEG-RFKGFGHVEFASAEA 393
Query: 94 ASSAIQALDGQDLHGRRIRV 113
A SA++ ++GQ+L R +R+
Sbjct: 394 AQSALE-MNGQELLQRAVRL 412
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 34 IRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSED 93
I + S +FVG +S+S + + + F GEV++ + D + R +GFG V +A++E
Sbjct: 358 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEG-RFKGFGHVEFASAEA 416
Query: 94 ASSAIQALDGQDLHGRRIRV 113
A SA++ ++GQ+L R +R+
Sbjct: 417 AQSALE-MNGQELLQRAVRL 435
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 34 IRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSED 93
I + S +FVG +S+S + + + F GEV++ + D + R +GFG V +A++E
Sbjct: 370 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEG-RFKGFGHVEFASAEA 428
Query: 94 ASSAIQALDGQDLHGRRIRV 113
A SA++ ++GQ+L R +R+
Sbjct: 429 AQSALE-MNGQELLQRAVRL 447
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 47.8 bits (112), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 34 IRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSED 93
I + S +FVG +S+S + + + F GEV++ + D + R +GFG V +A++E
Sbjct: 323 IENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEG-RFKGFGHVEFASAEA 381
Query: 94 ASSAIQALDGQDLHGRRIRV 113
A SA++ ++GQ+L R +R+
Sbjct: 382 AQSALE-MNGQELLQRAVRL 400
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+ V I++ T L F +YG+V++ I D + SRGF FV Y +++AS A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 102 DGQDLHGRRIRV 113
DG+ + GR I V
Sbjct: 78 DGRMVDGREITV 89
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+ V I++ T L F +YG+V++ I D + SRGF FV Y +++AS A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 102 DGQDLHGRRIRV 113
DG+ + GR I V
Sbjct: 78 DGRMVDGREITV 89
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+ V I++ T L F +YG+V++ I D + SRGF FV Y +++AS A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 102 DGQDLHGRRIRV 113
DG+ + GR I V
Sbjct: 78 DGRMVDGREITV 89
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 42 VFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQAL 101
+ V I++ T L F +YG+V++ I D + SRGF FV Y +++AS A+ L
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 102 DGQDLHGRRIRV 113
DG+ + GR I V
Sbjct: 78 DGRMVDGREITV 89
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 42 VFVGGISYSTDDTSLREAF-SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+FVG ++ D L E F +RY V AK+++D + R++G+GFV +A + A+
Sbjct: 169 IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTE 228
Query: 101 LDGQDLHGRRIRV 113
+ G R +R+
Sbjct: 229 MQGVLCSTRPMRI 241
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 42 VFVGGISYSTDDTSLREAFSR-YGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+FVG ++ D+ L E FS Y V AK++ D ++ RS+G+GFV + + S A+
Sbjct: 192 IFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQ 251
Query: 101 LDGQDLHGRRIRV 113
++G R +R+
Sbjct: 252 MNGVYCSSRPMRI 264
>Medtr5g017130.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr5:6226873-6227520 | 20130731
Length = 176
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
++ +S V G + T + L + F +G VI A I + + S F FV +AT E A
Sbjct: 90 KNKNSFLVVGGNLPPETRNHDLLQLFQPFGHVIGADIAIAQHTGLSGRFAFVNFATKEAA 149
Query: 95 SSAIQALDGQDLHGRRIRV 113
SAI+ L+G D H +RV
Sbjct: 150 QSAIERLNGIDYHNFILRV 168
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 12 KNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKI 71
KN A +Q + PS Q+ ++ +FVG + + D LR+ F++YGE++ KI
Sbjct: 235 KNPAAT--TQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKI 292
Query: 72 IVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
+ GFV ++ A AI+ L+G L G+ +R+
Sbjct: 293 ------PSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRL 328
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 42 VFVGGISYSTDDTSLREAF-SRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
+FVG ++ D L+E F + YG V AK++ D ++ RS+G+GFV ++ + + A+
Sbjct: 110 IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE 169
Query: 101 LDGQDLHGRRIRV 113
++G R +R+
Sbjct: 170 MNGVYCSTRPMRI 182
>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:44331530-44321717 | 20130731
Length = 401
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 8 GKLLKNSAVKHISQDVSVSTPSMFQAIRSMSSAKVFVGGISYSTDDTSLREAFSRYGEVI 67
GK+ ++ + + D++ S + + SS V+VG + + + + F +YG +
Sbjct: 76 GKVAEHHYSRGNTTDLNFPLKSKKRRMSRHSSRTVYVGNLPGDIREREVEDLFMKYGHIT 135
Query: 68 EAKIIVDHDSQRSRGFGFVTYATSEDASSAIQALDGQDLHGRRIRV 113
+ V R G+ FV + +DA AI+ DG D G R+RV
Sbjct: 136 HIDLKV---PPRPPGYAFVEFEDVQDAEDAIRGRDGYDFDGHRLRV 178
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 35 RSMSSAKVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDA 94
R V V +S T + L E F +G V + +D + SRGFGFV + + EDA
Sbjct: 206 RRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDA 265
Query: 95 SSAIQALDG 103
AI L+G
Sbjct: 266 QRAINKLNG 274
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 45.8 bits (107), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 41 KVFVGGISYSTDDTSLREAFSRYGEVIEAKIIVDHDSQRSRGFGFVTYATSEDASSAIQA 100
K+ V + + + +R+AFS G V E I D+ S+GF FV + +DA +AI+
Sbjct: 283 KLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRK 342
Query: 101 LDGQDLHGRRIRV 113
L+G R I V
Sbjct: 343 LNGSKFGSRLIAV 355