Miyakogusa Predicted Gene

Lj1g3v1943890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1943890.1 Non Characterized Hit- tr|I1JUK8|I1JUK8_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
GN=G,79.44,0,seg,NULL; SUBFAMILY NOT NAMED,NULL; VPRBP
PROTEIN-RELATED,NULL,CUFF.28222.1
         (267 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein ...   313   1e-85

>Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein | HC
            | chr3:50133071-50123613 | 20130731
          Length = 1929

 Score =  313 bits (802), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 152/194 (78%), Positives = 155/194 (79%), Gaps = 3/194 (1%)

Query: 1    MLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRIVPSLD 60
            MLLWNGVLWD RVS PVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLR V SLD
Sbjct: 1663 MLLWNGVLWDPRVSTPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVASLD 1722

Query: 61   QTAITFNARGDVMYAILRRNLEVVMSAFDARRVKHPLFAAFRTVDAINYSDIATTPVDRC 120
            QTAITFNARGDVMYAILRRNLE VMSA  ARRVKHPLF+AFRTVDAINYSDIAT PVDRC
Sbjct: 1723 QTAITFNARGDVMYAILRRNLEDVMSAMHARRVKHPLFSAFRTVDAINYSDIATIPVDRC 1782

Query: 121  VLDFATEPTDSFVGLITMDDQNEMYASARVYEIGRCRPTXXXXXXXXXXXXXXXXXXXXX 180
            VLDFATEPTDSFVGLITMDDQ +MY+SAR YEIGR RPT                     
Sbjct: 1783 VLDFATEPTDSFVGLITMDDQGDMYSSARSYEIGRRRPT---DDDSDPDDAESEEEDEDD 1839

Query: 181  XXXXXXPLLGPGLG 194
                  PLLGPG G
Sbjct: 1840 DDDNEDPLLGPGFG 1853