Miyakogusa Predicted Gene

Lj1g3v1008950.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v1008950.1 Non Characterized Hit- tr|I1JYZ6|I1JYZ6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,50,0.000000003,
,CUFF.26663.1
         (72 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g088835.1 | PPR containing plant-like protein | HC | chr3:...    68   2e-12

>Medtr3g088835.1 | PPR containing plant-like protein | HC |
           chr3:40655233-40657665 | 20130731
          Length = 629

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 2/65 (3%)

Query: 1   MWSCHRAPRAGSSAVRS--GQVTELLPDKFMCSMLMDVCSNLRYLDKGKQFYTFCFKCIY 58
           +W+CHRA R   +  +    +  ELLPD+F CS LM VCSNLR L+KGKQ + FCFK  +
Sbjct: 218 IWACHRAGRQELALEQFCCMKAAELLPDEFTCSTLMSVCSNLRDLEKGKQVFAFCFKVGF 277

Query: 59  LQNEI 63
           + N I
Sbjct: 278 VYNSI 282