Miyakogusa Predicted Gene
- Lj1g3v0129840.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v0129840.1 Non Characterized Hit- tr|D7TCR3|D7TCR3_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,54.67,0.000000000000001,RNA recognition motif,RNA recognition
motif domain; FAMILY NOT NAMED,NULL; no
description,Nucleotide,NODE_57968_length_468_cov_82.553421.path1.1
(86 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 126 5e-30
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 125 1e-29
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 79 8e-16
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 8e-15
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 8e-15
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 2e-13
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 7e-13
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-13
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 1e-12
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 1e-12
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 6e-12
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 7e-12
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-11
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-11
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-11
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-10
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-10
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 2e-10
Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-10
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-10
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-10
Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-10
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-10
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-09
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-09
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-09
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-09
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-09
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 7e-09
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 7e-09
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 8e-09
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 8e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-09
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 55 1e-08
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-08
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-08
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 54 2e-08
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 54 2e-08
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 5e-08
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-08
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-08
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 7e-08
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 7e-08
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-08
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-07
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 52 2e-07
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 52 2e-07
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 51 2e-07
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-07
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-07
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-07
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-07
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 3e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 50 4e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 50 5e-07
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 7e-07
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 49 7e-07
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 1e-06
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 48 2e-06
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 48 2e-06
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 48 2e-06
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 48 2e-06
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 48 2e-06
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 3e-06
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 3e-06
Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 47 5e-06
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 8e-06
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 46 8e-06
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 46 1e-05
>Medtr3g029580.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 137
Score = 126 bits (317), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 4/90 (4%)
Query: 1 MSLSKLQHASPS----QLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLN 56
+S S L H+ P + FLR +TSKIFVKGLAFSTTE+KLAEAFSQYG V+KADIVLN
Sbjct: 7 ISSSLLSHSKPCTSVFRHLFLRRITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLN 66
Query: 57 RAKTRSKGFGYVTFAKEEDAQKAQIGMNRK 86
+AK R KGFGYVTFA+EE+A+KAQIGMN K
Sbjct: 67 KAKKRCKGFGYVTFAEEEEARKAQIGMNGK 96
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 4/90 (4%)
Query: 1 MSLSKLQHASPS----QLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLN 56
+S S L H+ P + FLR +TSKIFVKGLAFSTTE+KLAEAFSQYG V+KADIVLN
Sbjct: 7 ISSSLLSHSKPCTSVFRHLFLRRITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLN 66
Query: 57 RAKTRSKGFGYVTFAKEEDAQKAQIGMNRK 86
+AK R KGFGYVTFA+EE+A+KAQIGMN K
Sbjct: 67 KAKKRCKGFGYVTFAEEEEARKAQIGMNGK 96
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 55/77 (71%)
Query: 10 SPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVT 69
SP L F R + K+FV GL+F TTE L++AFS YG+V++A ++ +R +SKG+G+VT
Sbjct: 20 SPFLLTFRRAIAFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVT 79
Query: 70 FAKEEDAQKAQIGMNRK 86
FA +++A+KA MN K
Sbjct: 80 FASQDEAEKAITEMNEK 96
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 6 LQHASPSQLPFLRTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKG 64
L ++PS +R+M+S K+F+ G+++ST E L EAFS+YG VL A I+++R RS+G
Sbjct: 23 LSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRG 82
Query: 65 FGYVTFAKEEDAQKAQIGMNRK 86
FG++TFA E+A A M+ K
Sbjct: 83 FGFITFATSEEASSALQAMDNK 104
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 6 LQHASPSQLPFLRTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKG 64
L ++PS +R+M+S K+F+ G+++ST E L EAFS+YG VL A I+++R RS+G
Sbjct: 23 LSMSTPSLFQAIRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRG 82
Query: 65 FGYVTFAKEEDAQKAQIGMNRK 86
FG++TFA E+A A M+ K
Sbjct: 83 FGFITFATSEEASSALQAMDNK 104
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 71.6 bits (174), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 10 SPSQLPFLRTM----TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGF 65
+PS L +R M T+K+F+ G+++ST E+ L EAFS+YG+VL A I+++R RS+GF
Sbjct: 26 APSALQAIRCMCSAPTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGF 85
Query: 66 GYVTFAKEEDAQKA 79
G++TF E+A A
Sbjct: 86 GFITFNSVEEASSA 99
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Query: 19 TMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQ 77
T+TS K+F+ GL+ TT++KL EAFS +G++L+A ++ +R RSKGF +V+++ E+A+
Sbjct: 31 TLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAE 90
Query: 78 KAQIGMNRK 86
KA+ GMN K
Sbjct: 91 KAREGMNAK 99
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 6 LQHASPSQLPFLRTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKG 64
L ++P +R+M+S K++V G+++ST + L E+F++YG VL A ++++R + RSKG
Sbjct: 23 LSMSTPLAFQAIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKG 82
Query: 65 FGYVTFAKEEDAQKAQIGMNRK 86
FG+VTFA E+A A M+ +
Sbjct: 83 FGFVTFATSEEASAALQAMDNQ 104
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 68.6 bits (166), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 9 ASPSQLPFLRTMTS----KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKG 64
+SPS +R +S K+FV G++++T E L++AFS+YG+VL A I+++R RSKG
Sbjct: 27 SSPSVFQAIRCFSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKG 86
Query: 65 FGYVTFAKEEDAQKA 79
FG+VT+ E+A A
Sbjct: 87 FGFVTYNTVEEASSA 101
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 68.6 bits (166), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 9 ASPSQLPFLRTMTS----KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKG 64
+SPS +R +S K+FV G++++T E L++AFS+YG+VL A I+++R RSKG
Sbjct: 27 SSPSVFQAIRCFSSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKG 86
Query: 65 FGYVTFAKEEDAQKA 79
FG+VT+ E+A A
Sbjct: 87 FGFVTYNTVEEASSA 101
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 9 ASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYV 68
SPSQ F T +K+FV GLA+ T +D L E F +YG +L+A I+ ++ RSKG+G+V
Sbjct: 7 GSPSQ--FGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFV 64
Query: 69 TFAKEEDAQKA 79
TF + A+KA
Sbjct: 65 TFKDADSAKKA 75
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 9 ASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYV 68
SPSQ F T +K+FV GLA+ T +D L E F +YG +L+A I+ ++ RSKG+G+V
Sbjct: 7 GSPSQ--FGDTTLTKVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFV 64
Query: 69 TFAKEEDAQKA 79
TF + A+KA
Sbjct: 65 TFKDADSAKKA 75
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 12/82 (14%)
Query: 10 SPSQLPFLRTM----TSKIF--------VKGLAFSTTEDKLAEAFSQYGKVLKADIVLNR 57
+PS L +R M T+K+F V G+++ST E+ L EAFS+YG+VL A I+++R
Sbjct: 26 APSALQAIRCMCSAPTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDR 85
Query: 58 AKTRSKGFGYVTFAKEEDAQKA 79
RS+GFG++TF E+A A
Sbjct: 86 ETGRSRGFGFITFNSVEEASSA 107
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 44/62 (70%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T + L +AFSQYG+++ + I+ +R RS+GFG+VTFA E+ + A G
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 83 MN 84
MN
Sbjct: 69 MN 70
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 7 QHASPSQLPFLRTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGF 65
Q S L +LR M+S K+F+ GL+++ + L +AF+ YG V++A ++ +R RS+GF
Sbjct: 20 QAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGF 79
Query: 66 GYVTFAKEEDAQKA 79
G+V F EE A A
Sbjct: 80 GFVNFTSEESATSA 93
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 7 QHASPSQLPFLRTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGF 65
Q S L +LR M+S K+F+ GL+++ + L +AF+ YG V++A ++ +R RS+GF
Sbjct: 20 QAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGF 79
Query: 66 GYVTFAKEEDAQKA 79
G+V F EE A A
Sbjct: 80 GFVNFTSEESATSA 93
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 8/94 (8%)
Query: 1 MSLSKLQHASPSQLPFLRTMT--------SKIFVKGLAFSTTEDKLAEAFSQYGKVLKAD 52
+SL QH PS P R +K+FV GL++S E L +AFS +G V +
Sbjct: 7 ISLFSKQHLRPSSHPQFRFFNSSSSSASSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVR 66
Query: 53 IVLNRAKTRSKGFGYVTFAKEEDAQKAQIGMNRK 86
IV ++ R++GFG+V F+ E+ A+ A+ M+ K
Sbjct: 67 IVYDKDSGRARGFGFVIFSNEDAAKSAKDAMDGK 100
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T + L +AFSQYG+++ + I+ +R RS+GFG+VTFA E+ A
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 83 MN 84
MN
Sbjct: 67 MN 68
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T + L +AFSQYG+++ + I+ +R RS+GFG+VTFA E+ A
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 83 MN 84
MN
Sbjct: 67 MN 68
>Medtr6g477870.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 169
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 46/65 (70%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
++++V GL+F TTE+ L AF +G+++ ++V+++ R +GF ++ +A EE+++KA
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 82 GMNRK 86
GM+ K
Sbjct: 155 GMHGK 159
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 46/65 (70%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
++++V GL+F TTE+ L AF +G+++ ++V+++ R +GF ++ +A EE+++KA
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 82 GMNRK 86
GM+ K
Sbjct: 155 GMHGK 159
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 59.7 bits (143), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 15 PFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
PF T +K+FV GLA+ T + + F Q+G +L+A ++ ++ RSKG+G+VTF E
Sbjct: 22 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPE 81
Query: 75 DAQKA 79
A++A
Sbjct: 82 AARRA 86
>Medtr4g117350.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661573 | 20130731
Length = 139
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQ 80
++KIF+KGL STTE L + FS +G+V + +++++ +S GF Y+ F +E+ AQ A
Sbjct: 70 STKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAA 129
Query: 81 IGMNRK 86
MN K
Sbjct: 130 KEMNGK 135
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 59.3 bits (142), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 42/65 (64%)
Query: 15 PFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
PF T +K+FV GLA+ T + + F Q+G +L+A ++ ++ RSKG+G+VTF E
Sbjct: 22 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPE 81
Query: 75 DAQKA 79
A++A
Sbjct: 82 AARRA 86
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQ 80
++KIF+KGL STTE L + FS +G+V + +++++ +S GF Y+ F +E+ AQ A
Sbjct: 70 STKIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAA 129
Query: 81 IGMNRK 86
MN K
Sbjct: 130 KEMNGK 135
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQ 80
++ +FV GL+ TT + L EAF ++G+V+ A +V +R SKGFG+V +A EDA K
Sbjct: 50 STNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGI 109
Query: 81 IGMNRK 86
GM+ K
Sbjct: 110 EGMDGK 115
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 9/83 (10%)
Query: 4 SKLQHASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSK 63
S L+ A P+++ +FV GL TT + L EAF ++G+V + +V +R SK
Sbjct: 35 SALKTAEPNEI---------VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSK 85
Query: 64 GFGYVTFAKEEDAQKAQIGMNRK 86
GFGYV +A EDA K GM+ K
Sbjct: 86 GFGYVRYATSEDAAKGIQGMDGK 108
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 45/64 (70%)
Query: 16 FLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEED 75
F T +K+FV GLA+ T ++ + + F Q+G++L+A ++ ++A RSKG+G+VTF + +
Sbjct: 10 FGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDA 69
Query: 76 AQKA 79
A +A
Sbjct: 70 AMRA 73
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 57.8 bits (138), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 45/64 (70%)
Query: 16 FLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEED 75
F T +K+FV GLA+ T ++ + + F Q+G++L+A ++ ++A RSKG+G+VTF + +
Sbjct: 10 FGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDA 69
Query: 76 AQKA 79
A +A
Sbjct: 70 AMRA 73
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
T +KIFV GLA+ T D L F Q+G +L+A ++ +R +SKG+G+VTF A
Sbjct: 23 TTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
T +KIFV GLA+ T D L F Q+G +L+A ++ +R +SKG+G+VTF A
Sbjct: 23 TTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
T +KIFV GLA+ T D L F Q+G +L+A ++ +R +SKG+G+VTF A
Sbjct: 23 TTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
T +KIFV GLA+ T D L F Q+G +L+A ++ +R +SKG+G+VTF A
Sbjct: 23 TTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
++FV+ L +STTE++L E FSQ+G V +A +V+++ RSKG Y+ F+ E A +A
Sbjct: 329 CRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARA 386
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV L F +KLA+ F Q G V A+++ NR RS+GFG+VT + E+ ++A
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERA 179
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
+ FV GLA++T L +AFS++G++ + ++ +R RS+GFG+VTFA+E+ + A
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 83 MN 84
MN
Sbjct: 69 MN 70
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 54.7 bits (130), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 16 FLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEED 75
F T +K+FV GLA+ T D++ F Q+G +L+A I+ ++ +SKG+G+VTF E
Sbjct: 10 FGDTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPES 69
Query: 76 AQKA 79
A++A
Sbjct: 70 ARRA 73
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 42/59 (71%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
K+F+ G+++ T E++L E F+ YG+V++A I+ +RA R++GFG+V F+ A++ I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVII 65
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 42/59 (71%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
K+F+ G+++ T E++L E F+ YG+V++A I+ +RA R++GFG+V F+ A++ I
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVII 65
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEE 74
T KIFV G+ + TED+ + F++YG+V I+ + + RS+GFG+VTF EE
Sbjct: 132 TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEE 185
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +K+FV GLA+ T + + F Q+G++L+A ++ ++ RSKG+G+VTF E A +
Sbjct: 22 TTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIR 81
Query: 79 A 79
A
Sbjct: 82 A 82
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 52.8 bits (125), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T +K+FV GLA+ T + + F Q+G++L+A ++ ++ RSKG+G+VTF E A +
Sbjct: 22 TTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIR 81
Query: 79 A 79
A
Sbjct: 82 A 82
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQ 80
T K+FV GL+F T+E L AF +G++++ +++++ RSKG+ ++ + EE A A
Sbjct: 191 TKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAAL 250
Query: 81 IGMNRK 86
MN K
Sbjct: 251 KEMNGK 256
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 11 PSQLPFLRTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVT 69
P L +R +S K+F+ GL+++T E L + F Q+G++++ ++ N SKG+G+V
Sbjct: 21 PQLLLCVRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVR 80
Query: 70 FAKEEDAQKAQ 80
F E A A+
Sbjct: 81 FNSETAAATAR 91
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 8 HASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGY 67
H SP+ P T KIFV GLA + TE F Q+G + ++ + R +GFG+
Sbjct: 95 HGSPAPTPI---RTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 151
Query: 68 VTFAKEEDAQK 78
+T+ EE +K
Sbjct: 152 ITYDSEEAVEK 162
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
K+F+ G+++ T ED+L + F +G V++A I+ +R R++GFG+V FA A++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 8 HASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGY 67
H SP+ P T KIFV GLA + TE F Q+G + ++ + R +GFG+
Sbjct: 95 HGSPAPTPI---RTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 151
Query: 68 VTFAKEEDAQK 78
+T+ EE +K
Sbjct: 152 ITYDSEEAVEK 162
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
K+F+ G+++ T ED+L + F +G V++A I+ +R R++GFG+V FA A++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 8 HASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGY 67
H SP+ P T KIFV GLA + TE F Q+G + ++ + R +GFG+
Sbjct: 95 HGSPAPTPI---RTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 151
Query: 68 VTFAKEEDAQK 78
+T+ EE +K
Sbjct: 152 ITYDSEEAVEK 162
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
K+F+ G+++ T ED+L + F +G V++A I+ +R R++GFG+V FA A++
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 8 HASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGY 67
H SP+ P T KIFV GLA + TE F Q+G + ++ + R +GFG+
Sbjct: 25 HGSPAPTPI---RTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 81
Query: 68 VTFAKEEDAQK 78
+T+ EE +K
Sbjct: 82 ITYDSEEAVEK 92
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 5/63 (7%)
Query: 18 RTMTS-KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDA 76
R+M+S +F+ G++++T L + FS YGKVL A I+ +R R +GFG+VTFA E+A
Sbjct: 29 RSMSSANLFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEA 84
Query: 77 QKA 79
A
Sbjct: 85 SAA 87
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + TT L AFSQYG++ V ++ +SKG+G++ F + A+ A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + TT L AFSQYG++ V ++ +SKG+G++ F + A+ A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + TT L AFSQYG++ V ++ +SKG+G++ F + A+ A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + TT L AFSQYG++ V ++ +SKG+G++ F + A+ A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
KIFV GL + TT L AFSQYG++ V ++ +SKG+G++ F + A+ A
Sbjct: 128 KIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNA 184
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+I+V LA+ +L + FS++GK++ A +V +R RS+GFG+VT + E + A
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDA 263
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+K+FV F +KLA F Q G V A+++ NR S+GFG+VT + E+A+ A
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+I+V LA+ +L + FS++GK++ A +V +R RS+GFG+VT + E + A
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDA 263
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+K+FV F +KLA F Q G V A+++ NR S+GFG+VT + E+A+ A
Sbjct: 109 AKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 18 RTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQ 77
+T + ++VK L+ S TED L F YG + A +++ A RSK FG+V F EDA
Sbjct: 207 KTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSA-VLMRDADGRSKCFGFVNFENAEDAA 265
Query: 78 KAQIGMNRK 86
KA +N K
Sbjct: 266 KAVEALNGK 274
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
+K+FV L+F TT+ +L FS +G + +A ++ ++ R KGFG+V++ E +A+KA+
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 82 GMN 84
+N
Sbjct: 67 ALN 69
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 39/54 (72%)
Query: 17 LRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTF 70
+++ + K+F+ G+++ T E++L E FS YG+V +A I+ +R R++GFG+V F
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF 54
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 50.8 bits (120), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+K+FV G++ TTED L F++YG VL + I +R +GFG+VTF+ A A
Sbjct: 10 AKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNA 67
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T + ++FV L FS + +LA+ F + G V+ +I+ + RS+GF +VT EDA++
Sbjct: 105 TQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEE 164
Query: 79 A 79
A
Sbjct: 165 A 165
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQK 78
T + ++FV L FS + +LA+ F + G V+ +I+ + RS+GF +VT EDA++
Sbjct: 105 TQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEE 164
Query: 79 A 79
A
Sbjct: 165 A 165
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 50.4 bits (119), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 39/54 (72%)
Query: 17 LRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTF 70
+++ + K+F+ G+++ T E++L E FS YG+V +A I+ +R R++GFG+V F
Sbjct: 1 MQSDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF 54
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+++V L FS T +LA+ F++ G V+ +IV +R RS+GF +VT E+A++A
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEA 166
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 50.1 bits (118), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
++FV+ L +STTE++L E FSQ+G V + +V+++ RSKG ++ F+ E A +A
Sbjct: 900 RLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARA 956
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 49.7 bits (117), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 36/48 (75%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTF 70
K+F++GL + TT + L FS YG++ +A +++++A +SKG+G+VTF
Sbjct: 74 KLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTF 121
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 18 RTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQ 77
R + +FVK L+ STT+D+L + F ++G + A +V+ +SK FG+V F +DA
Sbjct: 209 RAKFNNVFVKNLSESTTDDELKKTFGEFGTITSA-VVMRDGDGKSKCFGFVNFESTDDAA 267
Query: 78 KAQIGMNRK 86
+A +N K
Sbjct: 268 RAVEALNGK 276
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 24 IFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+FV L +S T +L + FS+ G V + +V + T+ +GFGYV FA E+DA +A
Sbjct: 23 LFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQA 78
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 21 TSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
T KIFV G+ + +ED+L FS++G V++ +I+ + RS+GFG+V F D+ KA
Sbjct: 105 TKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVF----DSDKA 159
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 19 TMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTF 70
T K+FV+GL+ TT + L FS YG + +A ++ ++A RSKG+G+V +
Sbjct: 73 TTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY 124
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
+ +++K L S ++KL E FS++G + ++ + A SKGFG+V F+ E+A KA
Sbjct: 209 ANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFD-AHGHSKGFGFVAFSTSEEASKAIN 267
Query: 82 GMNRK 86
GM+ K
Sbjct: 268 GMSGK 272
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
++FV L +STTE++L E FSQ+G V + ++++ RSKG ++ F+ E A +A
Sbjct: 193 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARA 249
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
++FV L +STTE++L E FSQ+G V + ++++ RSKG ++ F+ E A +A
Sbjct: 179 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARA 235
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
K+F+ G+++ T E+KL E FS YG VL ++ + + +GFG+V F+
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFS 55
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFA 71
K+F+ G+++ T E+KL E FS YG VL ++ + + +GFG+V F+
Sbjct: 7 KLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFS 55
>Medtr5g071540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:30368066-30365046 | 20130731
Length = 149
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 20 MTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKA 79
+ SKI VK L + T E+ L + FS +GK+ + +V + + RSKG ++ + ++DA A
Sbjct: 37 LASKILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAMLA 96
Query: 80 QIGMNRK 86
M+++
Sbjct: 97 LETMDQQ 103
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
K++V LA + T D L + FS+ G L A + ++S GFG+VTF+ +ED + A
Sbjct: 160 KVYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISS 219
Query: 83 MN 84
N
Sbjct: 220 FN 221
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 22 SKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQI 81
+ +++K + S E+KL E FS++G + V++ A+ RSKG G+V F E+A KA
Sbjct: 304 ANLYLKNIDKSLNEEKLKELFSEFGTITSCK-VMSDARGRSKGVGFVAFTTPEEASKAID 362
Query: 82 GMNRK 86
MN K
Sbjct: 363 EMNGK 367
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein
| HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 45.8 bits (107), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 23 KIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIG 82
K+ V G+ + + L E S+YG++ ++ R+ RS+GFGYVTFA +DA++ G
Sbjct: 5 KLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSG 64