Miyakogusa Predicted Gene

Lj1g3v0116470.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v0116470.1 Non Characterized Hit- tr|B9FA58|B9FA58_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,41.86,0.00000000004,CDC73,RNA polymerase II accessory factor,
Cdc73; seg,NULL; GB DEF: ARABIDOPSIS THALIANA GENOMIC
DNA,,CUFF.25246.1
         (392 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g006960.1 | RNA polymerase II assessory factor Cdc73p | HC...   616   e-176
Medtr5g006960.2 | RNA polymerase II assessory factor Cdc73p | HC...   616   e-176

>Medtr5g006960.1 | RNA polymerase II assessory factor Cdc73p | HC |
           chr5:1151360-1149106 | 20130731
          Length = 398

 Score =  616 bits (1589), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/395 (76%), Positives = 331/395 (83%), Gaps = 7/395 (1%)

Query: 1   MDPLSALREFTMRGELDKIVKLNGEFRFGEEYSFPCSVETAYRSTKGNRYTLETLVHYVK 60
           MDPL+ LR+FT+RG+LDKIV+LNG FRFGE+Y+FPCS+ETAYRSTKGNRYTLETLVHY+K
Sbjct: 8   MDPLTLLRDFTIRGDLDKIVRLNGNFRFGEDYTFPCSLETAYRSTKGNRYTLETLVHYIK 67

Query: 61  NHHLKHTEYFQNTFALGIPSVTLPDRKPILHYLQGTLASTDSIEYRPEDXXXXXXXXXXX 120
           NHHLKHTEYFQNT ALGIPSVTLPDRKPIL+YLQG L++TDSIEY PE            
Sbjct: 68  NHHLKHTEYFQNTLALGIPSVTLPDRKPILNYLQGILSTTDSIEYLPEQPSIPDEPSSHQ 127

Query: 121 XXXXXXXXXNKPDDTE---IDFMALIRAAEKPLKDRESLLECKNRDFYSVLVAATKREEE 177
                        + E   +DF+++IR AEKPLKDRESLLECKNRDFYSVLVAATKREEE
Sbjct: 128 QHSQFPNSDEIITELESPPLDFISMIRTAEKPLKDRESLLECKNRDFYSVLVAATKREEE 187

Query: 178 RQRIESHQRKDGLVAKSRLMXXXXXXXXXXXXXXXXPNPKPKMHLKGSKIGEGVPIILVP 237
           RQR ESHQRKDGLVAKSRL+                  PKPKMHLK   IGEGVPIILVP
Sbjct: 188 RQRAESHQRKDGLVAKSRLLGSADDFGGDEMGYDHQ-TPKPKMHLK---IGEGVPIILVP 243

Query: 238 SAFQTLITIYNVKEFLEDGIYIPTDVKVKQMKGTRPDCVTVQKKLSRDRVVAAYEVRDKP 297
           SAFQTLITIYNVK+FLEDG+Y+PTDVKVK MKG +PDCVTVQKKLSRDR V AYEVRDKP
Sbjct: 244 SAFQTLITIYNVKDFLEDGVYVPTDVKVKAMKGAKPDCVTVQKKLSRDRAVTAYEVRDKP 303

Query: 298 STLKPEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFFIRFEDDSMESVKTVKQWN 357
           S LKPEDWDRVVAVFVLGK+WQFK+WPFKDHVEIFNKI GFF+RFEDDS+ES KTVKQWN
Sbjct: 304 SALKPEDWDRVVAVFVLGKDWQFKDWPFKDHVEIFNKITGFFMRFEDDSIESAKTVKQWN 363

Query: 358 VKIISISKNKRHQDRAAALDVWDRLEEFVRSRSHS 392
           VKIISISKNKRHQDRAAAL+VWDRLEEFVRSRSHS
Sbjct: 364 VKIISISKNKRHQDRAAALEVWDRLEEFVRSRSHS 398


>Medtr5g006960.2 | RNA polymerase II assessory factor Cdc73p | HC |
           chr5:1151360-1148860 | 20130731
          Length = 398

 Score =  616 bits (1589), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/395 (76%), Positives = 331/395 (83%), Gaps = 7/395 (1%)

Query: 1   MDPLSALREFTMRGELDKIVKLNGEFRFGEEYSFPCSVETAYRSTKGNRYTLETLVHYVK 60
           MDPL+ LR+FT+RG+LDKIV+LNG FRFGE+Y+FPCS+ETAYRSTKGNRYTLETLVHY+K
Sbjct: 8   MDPLTLLRDFTIRGDLDKIVRLNGNFRFGEDYTFPCSLETAYRSTKGNRYTLETLVHYIK 67

Query: 61  NHHLKHTEYFQNTFALGIPSVTLPDRKPILHYLQGTLASTDSIEYRPEDXXXXXXXXXXX 120
           NHHLKHTEYFQNT ALGIPSVTLPDRKPIL+YLQG L++TDSIEY PE            
Sbjct: 68  NHHLKHTEYFQNTLALGIPSVTLPDRKPILNYLQGILSTTDSIEYLPEQPSIPDEPSSHQ 127

Query: 121 XXXXXXXXXNKPDDTE---IDFMALIRAAEKPLKDRESLLECKNRDFYSVLVAATKREEE 177
                        + E   +DF+++IR AEKPLKDRESLLECKNRDFYSVLVAATKREEE
Sbjct: 128 QHSQFPNSDEIITELESPPLDFISMIRTAEKPLKDRESLLECKNRDFYSVLVAATKREEE 187

Query: 178 RQRIESHQRKDGLVAKSRLMXXXXXXXXXXXXXXXXPNPKPKMHLKGSKIGEGVPIILVP 237
           RQR ESHQRKDGLVAKSRL+                  PKPKMHLK   IGEGVPIILVP
Sbjct: 188 RQRAESHQRKDGLVAKSRLLGSADDFGGDEMGYDHQ-TPKPKMHLK---IGEGVPIILVP 243

Query: 238 SAFQTLITIYNVKEFLEDGIYIPTDVKVKQMKGTRPDCVTVQKKLSRDRVVAAYEVRDKP 297
           SAFQTLITIYNVK+FLEDG+Y+PTDVKVK MKG +PDCVTVQKKLSRDR V AYEVRDKP
Sbjct: 244 SAFQTLITIYNVKDFLEDGVYVPTDVKVKAMKGAKPDCVTVQKKLSRDRAVTAYEVRDKP 303

Query: 298 STLKPEDWDRVVAVFVLGKEWQFKEWPFKDHVEIFNKIIGFFIRFEDDSMESVKTVKQWN 357
           S LKPEDWDRVVAVFVLGK+WQFK+WPFKDHVEIFNKI GFF+RFEDDS+ES KTVKQWN
Sbjct: 304 SALKPEDWDRVVAVFVLGKDWQFKDWPFKDHVEIFNKITGFFMRFEDDSIESAKTVKQWN 363

Query: 358 VKIISISKNKRHQDRAAALDVWDRLEEFVRSRSHS 392
           VKIISISKNKRHQDRAAAL+VWDRLEEFVRSRSHS
Sbjct: 364 VKIISISKNKRHQDRAAALEVWDRLEEFVRSRSHS 398