Miyakogusa Predicted Gene

Lj0g3v0352249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0352249.1 tr|G7I8G1|G7I8G1_MEDTR Replication factor C large
subunit OS=Medicago truncatula GN=MTR_1g030410 PE=,65.4,0,seg,NULL;
P-loop containing nucleoside triphosphate hydrolases,NULL; Rad17,NULL;
no description,NULL,CUFF.24230.1
         (911 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g030410.1 | P-loop nucleoside triphosphate hydrolase super...  1146   0.0  
Medtr3g072400.1 | P-loop nucleoside triphosphate hydrolase super...   924   0.0  

>Medtr1g030410.1 | P-loop nucleoside triphosphate hydrolase
            superfamily protein, putative | HC |
            chr1:10573825-10564912 | 20130731
          Length = 1178

 Score = 1146 bits (2965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 588/919 (63%), Positives = 699/919 (76%), Gaps = 13/919 (1%)

Query: 1    MASYYRSCQNKAEGSLWINKYKPTKATEVCGNSESLNFLRDWLHLWRGGRYHSRKDSSTW 60
            M+S+ +SC++KAE SLWI+KYKPTKA+EVCGN ESLNFLRDWLH W   RY +RKDSS  
Sbjct: 263  MSSFCQSCEDKAESSLWIHKYKPTKASEVCGNDESLNFLRDWLHHWHERRYQNRKDSSNK 322

Query: 61   DQSYIQXXXXXXXXXXXXXALKDINEEDSLENVLLITGPVGSGKSAAVYACAEEQGFEVL 120
            DQ+ I              A KD++EE SL+NVLLITGPVGSGKSAAVYACA+EQGFEVL
Sbjct: 323  DQTDIPDGDGDYNCAGCDYASKDVSEEGSLKNVLLITGPVGSGKSAAVYACAQEQGFEVL 382

Query: 121  ELNASDYRNGAAVKQYFGEALETHGFKRLLEQAVSSQNKTVKFPPAPTSPNGKAAEEIYD 180
            ELN SD RN  AVKQYFG+AL +   K L+E  V SQ KT+K   AP SPN K A+E+  
Sbjct: 383  ELNTSDCRNATAVKQYFGDALGSQCVKSLVEHTVGSQKKTLKLLQAPASPNVKEAKEMDH 442

Query: 181  GVIDLTTSSNDGVHSPGGKSQRLHEKNNVFTCHSVQTLILVEDVDILFPEDHGCIAAIKH 240
             VI++ T S+DG H PGG SQ+LH  +N  T  +VQTLILVEDVDILFPED GCIAAI+H
Sbjct: 443  DVIEMITLSDDGAHGPGGTSQKLHAIDNTLTSDAVQTLILVEDVDILFPEDRGCIAAIQH 502

Query: 241  IAETAKGPIILTSNSNNVALPGSFIRLHVSFSLPLPDELLCHLYMVCVTEEVNISPHLLK 300
            IAETAKGPIILTSNS    LP +F RLHVSFSLPLPDELL HL+ VC TEEV+ +P L++
Sbjct: 503  IAETAKGPIILTSNSKKAGLPNNFCRLHVSFSLPLPDELLRHLFTVCATEEVDANPLLME 562

Query: 301  KFIQSCDGDIRKTIMHLQFWFQNXXXXXXXXXXXXXSSLPFDLEAGHELLPKILPWSFPS 360
            KFIQSCD DIRKTI+HLQFWFQN              SLPFDLEAGH++LPK++PWSFPS
Sbjct: 563  KFIQSCDRDIRKTILHLQFWFQNKKYSKDKKVQTLYGSLPFDLEAGHKILPKMIPWSFPS 622

Query: 361  ELPKLIEKEVSKSVTLMEENPCLQGLVEEELQINKKHNDLGVQCIVTDEANVEMKRKRSI 420
            EL KLIE EV+KS+  ME N   +GLV+EEL IN+K N+  V C+ TD     MK  RSI
Sbjct: 623  ELSKLIENEVTKSIATMENNSSWEGLVKEELCINEKENNSEVPCMGTDYLEF-MKTIRSI 681

Query: 421  ADCNEFESQCSAMSELSNCYGSPLTPSRQMGPKKLAVMSSESEDKYPNYGHSLNIHHEDY 480
             D  EFESQ SA+SEL +C G  +T S Q    K  VMS+++ DK  N  HS+++H E Y
Sbjct: 682  PDRGEFESQYSAISELYSCSGPSVTSSWQKDQSKFVVMSTDAMDKDSNNRHSVDVHDEAY 741

Query: 481  KRQSLEGNSESSCKFELNQSYTSMSFCKLVCSGLENSE-EQSNYLETSYGAWLDETHKSL 539
            KRQ LEGN++SS  F LNQSY S SF +L+ SGLE+SE EQ  YLET+    L+ T+KSL
Sbjct: 742  KRQFLEGNADSSFNFLLNQSYASTSFGELLHSGLEDSEVEQYKYLETNNDTCLNNTYKSL 801

Query: 540  NISSFQESMIIPETATENRTQTLSAAVSS-GHLAGPIEVSPDNALTPFTFSVCQRIARLP 598
            ++S F ES  + ETA +NRT+TLS  VSS GHL+ P++VS  N L PF+FSVCQR+A++P
Sbjct: 802  DMSWFPESRFVSETAIQNRTETLSTVVSSGGHLSCPVDVSLSNELRPFSFSVCQRLAKVP 861

Query: 599  QNLDSLVNTEIPESSPKVSVQDFRDENRETTTVYNMMGECSHEEFNLKLNFVESSPSMEI 658
            Q  D LV TEIP+SSP+    DF D++ E  TVYN M ECSH +F L+  FV+SSPSMEI
Sbjct: 862  QGPDLLVTTEIPKSSPRAIAPDFCDDSMEIATVYNPMDECSHSDFKLESKFVDSSPSMEI 921

Query: 659  DMIQNLWRRLLDCKTDLRQNATSEQEGAIQVVKLASELTNLISEVDVLFRNHQQEQCGIM 718
            D +QN+WR+L   +TDL+Q+A SEQ GAI+VVKLAS L+NLISE D+LFRNHQQ+QCGIM
Sbjct: 922  DTVQNVWRKL---RTDLKQHAKSEQIGAIEVVKLASGLSNLISEADLLFRNHQQKQCGIM 978

Query: 719  EPPIFLSDEATYSWYDEQMMMSTVAMHGFCFYAKHISDMGSKLGCENRVDVTSEMLASTT 778
            EPP  LSDE T+SWYDEQMMMSTVA HGFCFYAKHI++ G KLG E+RVD+TSEMLAST 
Sbjct: 979  EPPTSLSDEDTFSWYDEQMMMSTVAAHGFCFYAKHIAEAGPKLGFEDRVDITSEMLASTA 1038

Query: 779  NIMALGKLSRQDHTKSLSNNTTK--ELDDM---KSMQYNENRKSLFNVIQSIVPARLS-L 832
            NIMALGKLSRQDHTK+ S+ T +  E++D    KS++ NE+R SLFNVI+SIVPAR S  
Sbjct: 1039 NIMALGKLSRQDHTKTTSSYTKELLEVNDQRNDKSLRCNESRTSLFNVIRSIVPARSSTT 1098

Query: 833  AMKGIAFNEYLSSLRQISVSEDIRMSQGAKKMRKGRPRGAHYLSRGKM-FSPEDISLVCE 891
            A++GIAF+E LSSLRQIS+SED R+SQG KKMRKGR    HYLSRGKM  SPEDISL+CE
Sbjct: 1099 AIQGIAFSELLSSLRQISISEDFRISQGVKKMRKGRRNAEHYLSRGKMVLSPEDISLLCE 1158

Query: 892  GDLYRKISSQYTANMESNC 910
            GDLYRKISSQY +NME NC
Sbjct: 1159 GDLYRKISSQYASNMEINC 1177


>Medtr3g072400.1 | P-loop nucleoside triphosphate hydrolase
            superfamily protein, putative | HC |
            chr3:32551238-32541508 | 20130731
          Length = 1203

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/918 (55%), Positives = 625/918 (68%), Gaps = 38/918 (4%)

Query: 1    MASYYRSCQNKAEGSLWINKYKPTKATEVCGNSESLNFLRDWLHLWRGGRYHSRKDSSTW 60
            M S Y  C++KAEGSLW  +YKPTKA EVCGN E++NFL DWLH W   RY  RKD+S  
Sbjct: 311  MRSSYVGCEDKAEGSLWTYRYKPTKAVEVCGNDEAMNFLSDWLHQWHERRYKPRKDTSNR 370

Query: 61   DQSYIQXXXXXXXXXXXXX-ALKDINEEDSLENVLLITGPVGSGKSAAVYACAEEQGFEV 119
            D   +Q                +D+NEEDSL+NVLLITGP GSGKSA VYACA+EQGF++
Sbjct: 371  DTRIMQDDDDDDYICSDSDYDSEDMNEEDSLQNVLLITGPTGSGKSAGVYACAQEQGFDI 430

Query: 120  LELNASDYRNGAAVKQYFGEALETHGFKRLLEQAVSSQNKTVKFPPAPTSPNGKAAEEIY 179
            LELN SD RNG AVK++FGEAL +HG KR  E  VSSQ  T K PPAP   N K A+E+ 
Sbjct: 431  LELNTSDCRNGTAVKEFFGEALGSHGIKRFSEHTVSSQKITTKLPPAPALVNCKTADEVN 490

Query: 180  DGVIDLTTSSNDGVHSPGGKSQRLHEKNNVFTCHSVQTLILVEDVDILFPEDHGCIAAIK 239
            DGV++L T  +D   SPG  SQ+L  KNNV  C   QTLILVEDVDILFPED GCIAAI+
Sbjct: 491  DGVVELITLFDDEA-SPGETSQKLIGKNNV-ACDKGQTLILVEDVDILFPEDRGCIAAIQ 548

Query: 240  HIAETAKGPIILTSNSNNVALPGSFIRLHVSFSLPLPDELLCHLYMVCVTEEVNISPHLL 299
             IAETAKGPIILTSN +N  LP +F RLH+SFSLP P ELLCHLY VC+ E V+I P LL
Sbjct: 549  QIAETAKGPIILTSNCDNPGLPDNFDRLHISFSLPTPKELLCHLYSVCLREGVSIHPLLL 608

Query: 300  KKFIQSCDGDIRKTIMHLQFWFQNXXXXXXXXXXXXXSSLPFDLEAGHELLPKILPWSFP 359
            +KFIQSCDGDIRKT+MHLQFW Q+              SLPFDLE GH++LPKI+PW FP
Sbjct: 609  EKFIQSCDGDIRKTLMHLQFWLQSKIFRKDRKVQTGYVSLPFDLEVGHQILPKIMPWDFP 668

Query: 360  SELPKLIEKEVSKSVTLMEENPCLQGLVEEELQINKKHNDLGVQCIVTD---EANVEM-K 415
            SE+ +L+E E  KS+  MEE+  +Q LV++EL IN+  NDL  Q + TD      VEM +
Sbjct: 669  SEISELVENEFVKSINKMEEDSSVQWLVDDELHINESQNDLDEQYMETDYIKAKKVEMIQ 728

Query: 416  RKRSIADCNEFESQCSAMSELSNCYGSPLTPSRQMGPKKLAVMSSESEDKYPNYGHSLNI 475
            R  SI D +E E QC  +SE SN  GSP+    Q G +KL VMSS+SE++  N  +  + 
Sbjct: 729  RNGSITDYSELEIQCKVISEFSNSSGSPVASYLQNGRRKLVVMSSDSEEEDSNNRYPRDT 788

Query: 476  HHEDYKRQSLEGNSESSCKFELNQSYTSMSFCKLVCSGLENS-EEQSNYLETSYGAWLDE 534
              E  +R S++GN+E + +F+LN +  S S  KLVCS LE+S EE   Y E +    ++E
Sbjct: 789  EDEANQRHSIKGNNECTSEFQLNDNCPSTSVRKLVCSELEDSVEEHVKYSEIANVTPINE 848

Query: 535  THKSLNISSFQESMIIPETATENRTQTLSAAVSSGHLAGPIEVSPDNALTPFTFSVCQRI 594
            T ++ +IS   ES  +PETA E+ T T+S  VS GH    +E S +N L P TFSV +R+
Sbjct: 849  TSETFDISCVPESTYVPETAIESGTDTMSGVVSYGHC---LEASMNNELKPLTFSVRRRL 905

Query: 595  ARLPQNLDSLVNTEIPESSPKVSVQDFRDENRETTTVYNMMGECSHEEFNLKLNFVESSP 654
            ++L +N D L++TEIPE                 TT+  +M ECS  +F LK  FVESSP
Sbjct: 906  SKLSENSDMLMDTEIPE-----------------TTIIKVMDECSRVDFKLKSTFVESSP 948

Query: 655  SMEIDMIQNLWRRLLDCKTDLRQNATSEQEGAIQVVKLASELTNLISEVDVLFRNHQQEQ 714
            S+E DM+QNLW++L   + DL+Q+  SEQ GA QVVKLAS L+NLISE D LF N+Q + 
Sbjct: 949  SLETDMVQNLWKKLR--QMDLKQHTISEQLGASQVVKLASGLSNLISEAD-LFHNYQHKH 1005

Query: 715  CGIMEPPIFLSDEATYSWYDEQMMMSTVAMHGFCFYAKHISDMGSKLGCENRVDVTSEML 774
              I+EP  F+S+EAT S Y+++ M ST+A+HGFCF+ K I+D+GS LGC N++D+TSEML
Sbjct: 1006 -DILEPQSFVSNEATTSSYNDETMTSTIAVHGFCFFVKLIADVGSTLGCANKIDLTSEML 1064

Query: 775  ASTTNIMALGKLSRQDHTKSLSNNTTKELD---DMKSMQYNENRKSLFNVIQSIVPARLS 831
            ASTTN MALGKLS  D  KS    T KEL+      +M+ +EN+ SLF V+QSIVPAR+S
Sbjct: 1065 ASTTNSMALGKLSGLDLAKSTGIYTGKELELNNPTNNMKKSENKASLFEVVQSIVPARIS 1124

Query: 832  LAMKGIAFNEYLSSLRQISVSEDIRMSQGAKKMRKGRPRGA-HYLSRGKMFSPEDISLVC 890
            LA+KG  FNEYLSSLRQIS SE   +SQG +K RK R RGA HYLSR    SPEDI LV 
Sbjct: 1125 LALKGDIFNEYLSSLRQISRSEAACVSQGVEK-RKARSRGAQHYLSRCTELSPEDIKLVS 1183

Query: 891  EGDLYRKISSQYTANMES 908
            EGDLYRK SSQ T N ES
Sbjct: 1184 EGDLYRKTSSQKT-NAES 1200