Miyakogusa Predicted Gene

Lj0g3v0332199.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0332199.1 Non Characterized Hit- tr|A3BBU9|A3BBU9_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,44.33,4e-17,FAMILY NOT NAMED,NULL;
Homeobox,Homeodomain,CUFF.22642.1
         (262 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g014075.1 | sequence-specific DNA-binding transcription fa...   315   3e-86
Medtr3g110260.1 | DNA-binding protein, putative | HC | chr3:5145...   174   6e-44
Medtr8g061040.1 | sequence-specific DNA-binding transcription fa...   150   9e-37

>Medtr8g014075.1 | sequence-specific DNA-binding transcription
           factor | HC | chr8:4390719-4385033 | 20130731
          Length = 270

 Score =  315 bits (807), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 163/275 (59%), Positives = 196/275 (71%), Gaps = 18/275 (6%)

Query: 1   MVELSLIDSPFPKLSTDQMLELERIYNDMGENAFDQNLCQEIAATLSA-----ANTSISW 55
           M EL+  +SPFPKLS D++LELERIYND+GE + D N C++IAA  S+       TS++W
Sbjct: 1   MKELTSNESPFPKLSLDEILELERIYNDVGEKSLDPNFCKDIAANFSSSSNSDGKTSLTW 60

Query: 56  EQVQQWFQNKLHESQDRAAS----LNQLVDISDTPSL----RSSTVLQGNRGAVVSDLAF 107
           EQVQQW QNK  E++   AS    LN +VD+S   S     +SS   +G + A +S+LAF
Sbjct: 61  EQVQQWLQNKHTETKGHFASSPEGLNLVVDLSGKSSSIKGNKSSPKPKGIQAADLSELAF 120

Query: 108 EARSTKDLAWHDVSMLLNYRVLSTGELEARVRYAGFGKGEDEWVNVKYGVRDRSIPLEPA 167
           EA S KD AWHDVSM LNYRVL TGELE RVRY GFGK EDEW+NVKYGVR RSIPLE +
Sbjct: 121 EAVSIKDNAWHDVSMFLNYRVLCTGELEVRVRYHGFGKDEDEWINVKYGVRQRSIPLEAS 180

Query: 168 ECHKGKEGDLVLCFPERDDYALYCDARVLSIQRKQHDETDCKCIYTVRFLHDNSEEAIHW 227
           ECHK KEG LVLCF  + DYALYCDA VL IQR++HD  +C CI+TVRF HD SEE + W
Sbjct: 181 ECHKVKEGHLVLCFHVKSDYALYCDAIVLKIQRREHDSEECSCIFTVRFYHDKSEEEVRW 240

Query: 228 ERVCYRPTQEESVVYHNSPEPTIEPSMSAIENLWG 262
           + +C RPTQEES V        +EP+M+ I NLWG
Sbjct: 241 DSLCCRPTQEESEVPFE-----LEPTMNPIANLWG 270


>Medtr3g110260.1 | DNA-binding protein, putative | HC |
           chr3:51452718-51446132 | 20130731
          Length = 232

 Score =  174 bits (442), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 91/230 (39%), Positives = 130/230 (56%), Gaps = 17/230 (7%)

Query: 11  FPKLSTDQMLELERIYNDMGEN-AFDQNLCQEIAATLS-----AANTSISWEQVQQWFQN 64
           F   +  ++  +E++  +  +  +F  +  Q++A + +     A    I W ++  WFQ 
Sbjct: 12  FSGFTNSEIERMEKLLRESSKGQSFTLDFYQKLAKSFNLSSGRAGKPVIKWTEIHSWFQT 71

Query: 65  KLHESQDRAASLNQLVDISDTPSLRSSTVLQGNRGAVVSDLAFEARSTKDLAWHDVSMLL 124
           +L +S       N+LV         S    +G      S+L FEARS+KD AW+DV   L
Sbjct: 72  RLQDSP--KVPQNELV---------SPQCTEGENTRDSSELEFEARSSKDQAWYDVETFL 120

Query: 125 NYRVLSTGELEARVRYAGFGKGEDEWVNVKYGVRDRSIPLEPAECHKGKEGDLVLCFPER 184
            +R LSTGE E RVR+ GFG  EDEWVN+K  VR+RS+P E  EC   K GD VLCF ER
Sbjct: 121 AHRFLSTGEPEVRVRFVGFGAEEDEWVNIKNSVRERSVPFENTECSNLKVGDYVLCFQER 180

Query: 185 DDYALYCDARVLSIQRKQHDETDCKCIYTVRFLHDNSEEAIHWERVCYRP 234
            D A+Y DA ++ IQR+ HD   C+C   +R+ HDN+EE +   R+C+RP
Sbjct: 181 RDQAIYYDAHIVEIQRRMHDIRGCRCHILIRYDHDNNEERVRLRRLCHRP 230


>Medtr8g061040.1 | sequence-specific DNA-binding transcription
           factor | HC | chr8:21158982-21150809 | 20130731
          Length = 375

 Score =  150 bits (380), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 24/246 (9%)

Query: 13  KLSTDQMLELERIYNDMGENAFDQNLCQEIAATLS-----AANTSISWEQVQQWFQNKLH 67
           + +  ++ E+E I ++       +++ Q +A   S         ++  +QV  WFQNK +
Sbjct: 13  RFTQPEVTEMEAILSEHNNAMPARDVLQALADKFSESPDRKGKITVQMKQVWNWFQNKRY 72

Query: 68  ESQDRAASLNQLVDI-------------------SDTPSLRSSTVLQGNRGAVVSDLAFE 108
             + +++     ++I                   S  P+  +S           S + FE
Sbjct: 73  AIRAKSSKTPAKLNITPMPRTDLTPGRIMTQPTASPIPAPSASVQTTAKAAPENSVMEFE 132

Query: 109 ARSTKDLAWHDVSMLLNYRVLSTGELEARVRYAGFGKGEDEWVNVKYGVRDRSIPLEPAE 168
           A+S +D AW+DV+  L+YR L + + E  VR+AGFG  EDEW+NV+  VR RS+P E +E
Sbjct: 133 AKSGRDGAWYDVATFLSYRHLESSDPEVLVRFAGFGSEEDEWINVRKNVRPRSLPCESSE 192

Query: 169 CHKGKEGDLVLCFPERDDYALYCDARVLSIQRKQHDETDCKCIYTVRFLHDNSEEAIHWE 228
           C     GDL+LCF E  + ALY DA VL  QR++HD   C+C + VR+ HD SEE +   
Sbjct: 193 CVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVPLR 252

Query: 229 RVCYRP 234
           ++C RP
Sbjct: 253 KICRRP 258