Miyakogusa Predicted Gene

Lj0g3v0317559.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317559.2 Non Characterized Hit- tr|I1PJV6|I1PJV6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,40.1,4e-19,SAGA-Tad1,Transcriptional coactivator SAGA-type
complex, Ada1/Tada1; SUBFAMILY NOT NAMED,NULL; FAMIL,CUFF.21554.2
         (202 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g009710.1 | transcriptional regulator of RNA polII, SAGA, ...   304   4e-83
Medtr1g009690.1 | transcriptional regulator of RNA polII, SAGA, ...   302   1e-82
Medtr1g106765.1 | transcriptional regulator of RNA polII, SAGA, ...   104   5e-23
Medtr4g095490.1 | transcriptional regulator of RNA polII, SAGA, ...   101   4e-22

>Medtr1g009710.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:1448833-1451707 | 20130731
          Length = 420

 Score =  304 bits (778), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 153/202 (75%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 1   MSKTPIVEDGEEVEQLNRLSFARSPLIAPLGIPHCSASVGGARKSLPVNSASDFVSFCDS 60
           +++   VEDGEE EQLNRL+FAR+PLIAPLGIP+CSASVGGARK+LPVNSA DFVS  DS
Sbjct: 220 LTERSTVEDGEEAEQLNRLNFARNPLIAPLGIPYCSASVGGARKALPVNSAGDFVSCSDS 279

Query: 61  GSLPDTDTLRRRMEQIATVQGLGGVSMECANMLNNVLDSYLKRLIRSCVDLVSARSANEN 120
           G L DTDTLRRRMEQIA VQGLGGVS ECA++LN+VLD YLKRLI+S VDLV ARSANE 
Sbjct: 280 GRLSDTDTLRRRMEQIAMVQGLGGVSPECASVLNSVLDVYLKRLIKSSVDLVGARSANEP 339

Query: 121 EPTKLPVSKPQIQGKIMNGMWPNNQSHVQQSPGGPAEPELEHRPQISISLHDFKVAMELN 180
             TK PVSKPQI GK++NGM PN+  HV QS G  AE E EHR Q S+SLHDFKVAMELN
Sbjct: 340 TTTKFPVSKPQIPGKLINGMLPNHHLHV-QSAGRLAESEPEHRSQFSVSLHDFKVAMELN 398

Query: 181 PQQLGEDWPLQLEKLSMQSLEK 202
           P+QLGEDWPLQ EK+SMQS EK
Sbjct: 399 PKQLGEDWPLQSEKISMQSFEK 420


>Medtr1g009690.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:1441169-1438514 | 20130731
          Length = 420

 Score =  302 bits (774), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/202 (74%), Positives = 168/202 (83%), Gaps = 3/202 (1%)

Query: 1   MSKTPIVEDGEEVEQLNRLSFARSPLIAPLGIPHCSASVGGARKSLPVNSASDFVSFCDS 60
           +++   VEDGEEVEQLNRL F R+PLIAPLGIP+CSASVGGARK+LP NS  DFVS CDS
Sbjct: 222 LTQISTVEDGEEVEQLNRLGFNRNPLIAPLGIPYCSASVGGARKALPANSTGDFVSCCDS 281

Query: 61  GSLPDTDTLRRRMEQIATVQGLGGVSMECANMLNNVLDSYLKRLIRSCVDLVSARSANEN 120
           G L DTDTLRRRMEQIA VQGL GVS ECA +LN+VLD YLKRLI+S VDLV  RS   N
Sbjct: 282 GRLSDTDTLRRRMEQIAMVQGLVGVSPECATVLNSVLDVYLKRLIKSSVDLVGTRST--N 339

Query: 121 EPTKLPVSKPQIQGKIMNGMWPNNQSHVQQSPGGPAEPELEHRPQISISLHDFKVAMELN 180
           EPTKLP+SK Q+Q K++NGM PNN  HV  + G  AEP+LEHRPQ S+SLHDFKVAMELN
Sbjct: 340 EPTKLPISKQQVQEKLINGMLPNNHLHVHNT-GRMAEPQLEHRPQFSVSLHDFKVAMELN 398

Query: 181 PQQLGEDWPLQLEKLSMQSLEK 202
           PQQLGEDWPLQLEK+SMQS E+
Sbjct: 399 PQQLGEDWPLQLEKISMQSFEE 420


>Medtr1g106765.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | HC | chr1:48303372-48305404 | 20130731
          Length = 358

 Score =  104 bits (260), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 31/207 (14%)

Query: 2   SKTPI-VEDGEEVEQLNRLSF----ARSPLIAPLGIPHCSASVGGARKSLPVNSASD--- 53
           S+ PI VEDGEEVEQL         ++SP+ APLG+   S + G  R  L + S+     
Sbjct: 171 SRPPISVEDGEEVEQLGGSPSPSIQSKSPVAAPLGV---SMNSGYGRSPLSIASSCRKHP 227

Query: 54  FVSFCDSGSLPDTDTLRRRMEQIATVQGLGGVSMECANMLNNVLDSYLKRLIRSCVDLVS 113
             +   +G LPDT +LR R+EQ    +GL  V+++C N+LNN +DSYLKRL+ S   L S
Sbjct: 228 RETCFSNGYLPDTSSLRSRLEQKLKKEGLT-VTVDCVNLLNNAMDSYLKRLVESSTGLSS 286

Query: 114 A-RSANENEPTKLPVSKPQIQGKIMNGMWPNNQSHVQQSPGGPAEPELEHRPQISISLHD 172
             R  NE+          + QG        N QS    +   P             SL D
Sbjct: 287 GLRFGNEH----------RRQG--------NGQSIADSNILQPRRYMQTATQSSCASLLD 328

Query: 173 FKVAMELNPQQLGEDWPLQLEKLSMQS 199
           F+VAMELNPQ LG DWP QLEK+ +++
Sbjct: 329 FRVAMELNPQVLGPDWPTQLEKICIRA 355


>Medtr4g095490.1 | transcriptional regulator of RNA polII, SAGA,
           subunit | LC | chr4:39817649-39814422 | 20130731
          Length = 455

 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 106/202 (52%), Gaps = 35/202 (17%)

Query: 7   VEDGEEVEQ-LNRLSFARSPLIAPLGIPHCSASVGGARKSLPVNS--ASDFVSFCDSGS- 62
           VE G+EV++   RL+  RSP+ APL +P    + G   + L  N   +    + C+S S 
Sbjct: 283 VEYGKEVDRDSERLAIIRSPIRAPLALP----TYGNRAQRLAHNGLPSGIVTNTCESISY 338

Query: 63  LPDTDTLRRRMEQIATVQGLGGVSMECANMLNNVLDSYLKRLIRSCVDLVSARSANENEP 122
           LPDT +L +R+E     +G   +S + AN+LN  LD YLKRLI+ C+DL +++  N    
Sbjct: 339 LPDTHSLMKRLEHNLETEGCN-ISADAANVLNKALDVYLKRLIKPCLDLAASKPVN---- 393

Query: 123 TKLPVSKPQIQGKIMNGM--WPNNQSHVQQSPGGPAEPELEHRPQISISLHDFKVAMELN 180
                   +  G I  GM   P N+S VQQ  G             S S+ DF+ AMELN
Sbjct: 394 --------KFSGHIQPGMNYLPQNRS-VQQLIGS-----------ASASISDFRAAMELN 433

Query: 181 PQQLGEDWPLQLEKLSMQSLEK 202
           P  LGEDW L  EK+  ++ E+
Sbjct: 434 PAILGEDWSLHFEKVCFRASEE 455