Miyakogusa Predicted Gene
- Lj0g3v0296869.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0296869.2 tr|A2VC29|A2VC29_LOTJA Spermine synthase OS=Lotus
japonicus GN=spms PE=2
SV=1,99.2,0,SPERMIDINE_SYNTHASE_2,Spermidine/spermine synthases
family; SPERMIDINE_SYNTHASE_1,Spermidine/spermin,CUFF.19909.2
(250 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g091090.2 | spermine/spermidine synthase | HC | chr3:41402... 418 e-117
Medtr3g091090.1 | spermine/spermidine synthase | HC | chr3:41403... 418 e-117
Medtr1g028360.1 | spermine/spermidine synthase | HC | chr1:95411... 360 e-100
Medtr5g034470.1 | spermidine synthase | HC | chr5:14952637-14957... 275 2e-74
Medtr5g034470.2 | spermidine synthase | HC | chr5:14952706-14957... 275 3e-74
Medtr8g063940.1 | spermidine synthase | HC | chr8:26823287-26817... 270 1e-72
Medtr3g078190.1 | spermidine synthase | HC | chr3:35216944-35220... 202 2e-52
Medtr1g015300.1 | thermospermine synthase ACAULIS protein | HC |... 94 1e-19
Medtr5g006140.1 | thermospermine synthase ACAULIS protein | HC |... 89 5e-18
Medtr5g006140.2 | thermospermine synthase ACAULIS protein | HC |... 88 7e-18
Medtr3g104960.1 | thermospermine synthase ACAULIS protein | HC |... 67 2e-11
>Medtr3g091090.2 | spermine/spermidine synthase | HC |
chr3:41402883-41398064 | 20130731
Length = 358
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/250 (81%), Positives = 218/250 (87%)
Query: 1 MGDAAGRGLECQKTMDGKESNRNGLEKELPSCCLKAIASDPELDAKCHSTVVSGWFSAPQ 60
MGDA RGLECQKTMDGK SN NGLEKE+PSCCLKA+AS PEL+A CHSTVVSGWFSA Q
Sbjct: 1 MGDAVERGLECQKTMDGKASNGNGLEKEIPSCCLKAMASAPELEANCHSTVVSGWFSASQ 60
Query: 61 TCSGKSGKDAYFNNPMWPGEAHSIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQL 120
TCS KS + YFNNPMWPGEAHSIKV+K L++EKS YQEVLVFES YGKVLVLDGIVQL
Sbjct: 61 TCSEKSEEVLYFNNPMWPGEAHSIKVEKKLFQEKSLYQEVLVFESLTYGKVLVLDGIVQL 120
Query: 121 TEKDECAYQEMIAHLPLCSIASPETXXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVID 180
TEKDECAYQEMIAHLPLCSI SP+ REVSRHSSV+ IDICEIDKMVID
Sbjct: 121 TEKDECAYQEMIAHLPLCSIPSPKNVLVVGGGDGGVLREVSRHSSVEHIDICEIDKMVID 180
Query: 181 VSRKFFPELAVGFDDPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFF 240
VSRKFFPELAVGFDDPRVHLHVGDA+EFL+ PEG+YDA+IVDSSDPVGPAQELVEKPFF
Sbjct: 181 VSRKFFPELAVGFDDPRVHLHVGDAIEFLKRAPEGRYDAVIVDSSDPVGPAQELVEKPFF 240
Query: 241 ETLAKALRPG 250
ET++KALRPG
Sbjct: 241 ETISKALRPG 250
>Medtr3g091090.1 | spermine/spermidine synthase | HC |
chr3:41403678-41398064 | 20130731
Length = 358
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/250 (81%), Positives = 218/250 (87%)
Query: 1 MGDAAGRGLECQKTMDGKESNRNGLEKELPSCCLKAIASDPELDAKCHSTVVSGWFSAPQ 60
MGDA RGLECQKTMDGK SN NGLEKE+PSCCLKA+AS PEL+A CHSTVVSGWFSA Q
Sbjct: 1 MGDAVERGLECQKTMDGKASNGNGLEKEIPSCCLKAMASAPELEANCHSTVVSGWFSASQ 60
Query: 61 TCSGKSGKDAYFNNPMWPGEAHSIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQL 120
TCS KS + YFNNPMWPGEAHSIKV+K L++EKS YQEVLVFES YGKVLVLDGIVQL
Sbjct: 61 TCSEKSEEVLYFNNPMWPGEAHSIKVEKKLFQEKSLYQEVLVFESLTYGKVLVLDGIVQL 120
Query: 121 TEKDECAYQEMIAHLPLCSIASPETXXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVID 180
TEKDECAYQEMIAHLPLCSI SP+ REVSRHSSV+ IDICEIDKMVID
Sbjct: 121 TEKDECAYQEMIAHLPLCSIPSPKNVLVVGGGDGGVLREVSRHSSVEHIDICEIDKMVID 180
Query: 181 VSRKFFPELAVGFDDPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFF 240
VSRKFFPELAVGFDDPRVHLHVGDA+EFL+ PEG+YDA+IVDSSDPVGPAQELVEKPFF
Sbjct: 181 VSRKFFPELAVGFDDPRVHLHVGDAIEFLKRAPEGRYDAVIVDSSDPVGPAQELVEKPFF 240
Query: 241 ETLAKALRPG 250
ET++KALRPG
Sbjct: 241 ETISKALRPG 250
>Medtr1g028360.1 | spermine/spermidine synthase | HC |
chr1:9541147-9544464 | 20130731
Length = 374
Score = 360 bits (925), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/234 (76%), Positives = 193/234 (82%), Gaps = 3/234 (1%)
Query: 17 GKESNRNGLEKELPSCCLKAIASDPELDAKCHSTVVSGWFSAPQTCSGKSGKDAYFNNPM 76
G N +EK++PSCCLKA S P+L+ KCHSTVVSGWFS Q+ SG+ YFNNPM
Sbjct: 25 GSNMNYEDIEKKIPSCCLKAKVSVPKLEGKCHSTVVSGWFSQSQSSSGEV---VYFNNPM 81
Query: 77 WPGEAHSIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLP 136
WPGEAHSIKV+K LY+EKS +QEVLVFES YGKVLVLDGIVQLTEKDECAYQEMI HLP
Sbjct: 82 WPGEAHSIKVEKKLYEEKSNFQEVLVFESLTYGKVLVLDGIVQLTEKDECAYQEMITHLP 141
Query: 137 LCSIASPETXXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDP 196
LCSI SP+T REV RHSSV +DICEIDKMVIDVS+K+FPELAVGF+DP
Sbjct: 142 LCSIQSPKTVLVVGGGDGGVLREVCRHSSVTHVDICEIDKMVIDVSKKYFPELAVGFEDP 201
Query: 197 RVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFFETLAKALRPG 250
RVHLHVGDAVEFLR TPEGKYDAIIVDSSDPVGPAQELVEKPFF TLAKALRPG
Sbjct: 202 RVHLHVGDAVEFLRFTPEGKYDAIIVDSSDPVGPAQELVEKPFFVTLAKALRPG 255
>Medtr5g034470.1 | spermidine synthase | HC | chr5:14952637-14957856
| 20130731
Length = 343
Score = 275 bits (704), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 133/226 (58%), Positives = 170/226 (75%), Gaps = 17/226 (7%)
Query: 26 EKELPSCCL-KAIASDPELDAKCHSTVVSGWFSAPQTCSGKSGKDAYFNNPMWPGEAHSI 84
E +LP + + DP+ + S+V+ GWFS +PMWPGEAHS+
Sbjct: 27 EDQLPHNGFSETVPKDPQPNGL--SSVIPGWFSE--------------ISPMWPGEAHSL 70
Query: 85 KVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPE 144
KV+KIL++ KS+YQ V+VF+S+ YGKVLVLDG++QLTE+DECAYQEMI HLPLCSI +P+
Sbjct: 71 KVEKILFQGKSDYQNVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPK 130
Query: 145 TXXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGD 204
REVSRH+SV++IDICEIDKMV+DVS++FFP++AVGF+DPRV LH+GD
Sbjct: 131 KVLVIGGGDGGVLREVSRHASVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLHIGD 190
Query: 205 AVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFFETLAKALRPG 250
V FL+ PEG YDA+IVDSSDP+GPAQEL EKPFFE++A+ALRPG
Sbjct: 191 GVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPG 236
>Medtr5g034470.2 | spermidine synthase | HC | chr5:14952706-14957807
| 20130731
Length = 349
Score = 275 bits (704), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 133/226 (58%), Positives = 170/226 (75%), Gaps = 17/226 (7%)
Query: 26 EKELPSCCL-KAIASDPELDAKCHSTVVSGWFSAPQTCSGKSGKDAYFNNPMWPGEAHSI 84
E +LP + + DP+ + S+V+ GWFS +PMWPGEAHS+
Sbjct: 27 EDQLPHNGFSETVPKDPQPNGL--SSVIPGWFSE--------------ISPMWPGEAHSL 70
Query: 85 KVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPE 144
KV+KIL++ KS+YQ V+VF+S+ YGKVLVLDG++QLTE+DECAYQEMI HLPLCSI +P+
Sbjct: 71 KVEKILFQGKSDYQNVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPK 130
Query: 145 TXXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGD 204
REVSRH+SV++IDICEIDKMV+DVS++FFP++AVGF+DPRV LH+GD
Sbjct: 131 KVLVIGGGDGGVLREVSRHASVEKIDICEIDKMVVDVSKQFFPDIAVGFEDPRVTLHIGD 190
Query: 205 AVEFLRCTPEGKYDAIIVDSSDPVGPAQELVEKPFFETLAKALRPG 250
V FL+ PEG YDA+IVDSSDP+GPAQEL EKPFFE++A+ALRPG
Sbjct: 191 GVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPG 236
>Medtr8g063940.1 | spermidine synthase | HC | chr8:26823287-26817588
| 20130731
Length = 342
Score = 270 bits (690), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 123/202 (60%), Positives = 159/202 (78%), Gaps = 14/202 (6%)
Query: 49 STVVSGWFSAPQTCSGKSGKDAYFNNPMWPGEAHSIKVDKILYKEKSEYQEVLVFESSIY 108
S+V+ GWFS +PMWPGEAHS+K++KIL++ S+YQ+V+VF+SS Y
Sbjct: 48 SSVIPGWFSEI--------------SPMWPGEAHSLKIEKILFQGNSDYQKVMVFQSSTY 93
Query: 109 GKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPETXXXXXXXXXXXXREVSRHSSVKR 168
GKVLVLDG++QLTE+DECAYQEMI HLPLCSI++P+ REV+RHSS+++
Sbjct: 94 GKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVARHSSIEK 153
Query: 169 IDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPV 228
IDICEID MV++VS++FFPE+AVGF+DPRV L +GD V FL+ PEG YDA+IVDSSDP+
Sbjct: 154 IDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPI 213
Query: 229 GPAQELVEKPFFETLAKALRPG 250
GPAQEL EKPFF+++A+ALRPG
Sbjct: 214 GPAQELFEKPFFQSVARALRPG 235
>Medtr3g078190.1 | spermidine synthase | HC | chr3:35216944-35220034
| 20130731
Length = 323
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 93/154 (60%), Positives = 119/154 (77%)
Query: 75 PMWPGEAHSIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAH 134
P+WPGEAH +KV+ I ++ KSE+Q++LVFE+S YGKV VLDG +QLTEKDEC+YQEM+ H
Sbjct: 50 PIWPGEAHFLKVENICFQGKSEFQDMLVFETSTYGKVFVLDGALQLTEKDECSYQEMMTH 109
Query: 135 LPLCSIASPETXXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFD 194
LPLCSI +P+ RE+SRHSSV++IDICEID M+IDV +K+FP++A+G+
Sbjct: 110 LPLCSIPNPKKVLLFGGGDGGILREISRHSSVEQIDICEIDTMLIDVYKKYFPDIAIGYK 169
Query: 195 DPRVHLHVGDAVEFLRCTPEGKYDAIIVDSSDPV 228
DPRV LHV D FL P+G YDAIIVD+ DPV
Sbjct: 170 DPRVKLHVIDGTIFLNSVPKGTYDAIIVDAFDPV 203
>Medtr1g015300.1 | thermospermine synthase ACAULIS protein | HC |
chr1:3769235-3765574 | 20130731
Length = 337
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 83 SIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIAS 142
S K++ +L+K SEYQ++ + ++ +GK L+LDG +Q +E DE Y E + H L ++
Sbjct: 46 SFKLNSVLHKAISEYQDIALLDTKRFGKALMLDGKMQSSEADEFIYHECLIHPSLLCHSN 105
Query: 143 PETXXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHV 202
P+T RE +H S++++ +C+IDK V+D RK+ F D ++ L +
Sbjct: 106 PKTVFIMGGGEGSAAREALKHKSMEKVVMCDIDKEVVDFCRKYLVANKEAFADKKLDLVI 165
Query: 203 GDAVEFLRCTPEGKYDAIIVDSSDPV--GPAQELVEKPFFETLAK 245
A L E K+D I+ D +DP+ GP +L K F+E + K
Sbjct: 166 NCAKAELEKRKE-KFDIIVGDLADPLEDGPCYQLYTKSFYEKVVK 209
>Medtr5g006140.1 | thermospermine synthase ACAULIS protein | HC |
chr5:786812-783809 | 20130731
Length = 328
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 86 VDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPET 145
++ IL+ S+YQ++ + ++ +GK LVLDG +Q E DE Y E + H L P+
Sbjct: 42 LNSILHTGASQYQDIALLDTKPFGKALVLDGKLQSAETDEFIYHECLVHPALLHHPMPKN 101
Query: 146 XXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDA 205
RE+ RH ++ ++ +C+ID+ V++ + + F D R+ + + DA
Sbjct: 102 VFIMGGGEGSTARELLRHKTIDKVVMCDIDEEVVEFCKSYLVVNKEAFHDSRLEVVINDA 161
Query: 206 VEFLRCTPEGKYDAIIVDSSDPV--GPAQELVEKPFFE-TLAKALRPG 250
L E KYD I+ D +DP+ GP +L K F+E TL L+ G
Sbjct: 162 KAELEGKEE-KYDVIVGDLADPIEGGPCYKLYTKDFYELTLKPKLKKG 208
>Medtr5g006140.2 | thermospermine synthase ACAULIS protein | HC |
chr5:786812-783809 | 20130731
Length = 262
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 86 VDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIASPET 145
++ IL+ S+YQ++ + ++ +GK LVLDG +Q E DE Y E + H L P+
Sbjct: 42 LNSILHTGASQYQDIALLDTKPFGKALVLDGKLQSAETDEFIYHECLVHPALLHHPMPKN 101
Query: 146 XXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDA 205
RE+ RH ++ ++ +C+ID+ V++ + + F D R+ + + DA
Sbjct: 102 VFIMGGGEGSTARELLRHKTIDKVVMCDIDEEVVEFCKSYLVVNKEAFHDSRLEVVINDA 161
Query: 206 VEFLRCTPEGKYDAIIVDSSDPV--GPAQELVEKPFFE-TLAKALRPG 250
L E KYD I+ D +DP+ GP +L K F+E TL L+ G
Sbjct: 162 KAELEGKEE-KYDVIVGDLADPIEGGPCYKLYTKDFYELTLKPKLKKG 208
>Medtr3g104960.1 | thermospermine synthase ACAULIS protein | HC |
chr3:48391839-48388037 | 20130731
Length = 330
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 12/165 (7%)
Query: 83 SIKVDKILYKEKSEYQEVLVFESSIYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIAS 142
S ++ +L+K S+YQE+ + ++ +GK LV+DG + E DE Y E + H PL +
Sbjct: 48 SFALNSVLHKGISDYQEIALLDTKRFGKALVIDGKMPSAEMDEFIYHECLIHPPLLCHPN 107
Query: 143 PETXXXXXXXXXXXXREVSRHSSVKRIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHV 202
P+ RE +H+ V V+D +K+ F ++ L +
Sbjct: 108 PKRVFIMGGGEGSATRESLKHNQVIE---------VVDFCKKYLITNREAFAHKKLDLVI 158
Query: 203 GDAVEFLRCTPEGKYDAIIVDSSDPV--GPAQELVEKPFFETLAK 245
D L E K+D I+ D +DPV GP +L K F+E + K
Sbjct: 159 NDDKAELEKRKE-KFDIIVGDLADPVEGGPCYQLYTKSFYENILK 202