Miyakogusa Predicted Gene

Lj0g3v0290279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290279.1 tr|Q793C9|Q793C9_MOUSE U2 small nuclear
ribonucleoprotein auxiliary factor (U2AF) 1, related
sequenc,42.86,8e-19,U2AUXFACTOR,U2 auxiliary factor small subunit;
zinc finger,Zinc finger, CCCH-type; seg,NULL; U2 SNRN,CUFF.19402.1
         (281 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g005450.1 | zinc finger CCCH domain protein, putative | HC...   319   2e-87
Medtr7g103630.1 | splicing factor U2af small subunit A-like prot...    63   3e-10
Medtr2g084715.2 | splicing factor U2af small subunit A-like prot...    62   8e-10
Medtr2g084715.1 | splicing factor U2af small subunit A-like prot...    62   8e-10
Medtr2g084715.3 | splicing factor U2af small subunit A-like prot...    62   8e-10
Medtr1g035130.6 | splicing factor U2af small subunit A-like prot...    60   3e-09
Medtr1g035130.3 | splicing factor U2af small subunit A-like prot...    60   3e-09
Medtr1g035130.1 | splicing factor U2af small subunit A-like prot...    60   3e-09
Medtr1g035130.4 | splicing factor U2af small subunit A-like prot...    60   3e-09
Medtr1g035130.2 | splicing factor U2af small subunit A-like prot...    60   3e-09
Medtr1g035130.5 | splicing factor U2af small subunit A-like prot...    60   3e-09

>Medtr2g005450.1 | zinc finger CCCH domain protein, putative | HC |
           chr2:162220-168024 | 20130731
          Length = 827

 Score =  319 bits (817), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/267 (62%), Positives = 192/267 (71%), Gaps = 15/267 (5%)

Query: 29  LLASVLILISVHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFI 88
           +    L    + +F+VCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSC+F+
Sbjct: 258 VHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFV 317

Query: 89  NLTRWKVAICGEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVRKMAAL 148
           NLTRWKVAICGEYMKSG+KTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWV++M AL
Sbjct: 318 NLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVAL 377

Query: 149 FGYSDDYEILREQGNLSGQSY-RNMSKTXXXXXXXXXXXXGEMDQLNSGYSDRRKHEDER 207
           FG+SD+ E+ R  GN S   +  N+ +T             EM QL  G S RR+ EDER
Sbjct: 378 FGHSDNCEMSRVHGNFSALKHSSNILETDSDRYHSRRSRSREMGQLYGGRSSRRRQEDER 437

Query: 208 NQRT----------PNEGKKRRDRTPDTDSDKEWLEEEEDRVKHHRYTRKSSINKN---N 254
            QRT           N  +K R++T D+DSDKE L EE DR K+H +TRKSS N N   N
Sbjct: 438 KQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGL-EEVDRKKYHEHTRKSSFNWNKDDN 496

Query: 255 KRSHEEDSDVDWTTKTRGNKKQHDREG 281
            R HEE SDVD  T  R N+K HDR+G
Sbjct: 497 SRRHEEYSDVDRVTINRDNEKPHDRKG 523


>Medtr7g103630.1 | splicing factor U2af small subunit A-like protein
           | HC | chr7:41947426-41950345 | 20130731
          Length = 327

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    +C N + H+ GNVYVQYK  D A  A  ++ GR+++G+ +  +F  +T ++ A C
Sbjct: 109 IQSLNICDNLADHMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATC 168

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++    C+ G  CNF+H
Sbjct: 169 RQYEEN---VCNRGGYCNFMH 186


>Medtr2g084715.2 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927010-35930737 | 20130731
          Length = 324

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    VC N + H+ GNVYVQ++  + A  A  ++ GR++AG+ +  +F  +T ++ A C
Sbjct: 95  IESLNVCDNLADHMVGNVYVQFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIHCFR 122
            +Y ++   TC+ G  CNF+H  R
Sbjct: 155 RQYEEN---TCNRGGYCNFMHLKR 175


>Medtr2g084715.1 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35929938 | 20130731
          Length = 324

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    VC N + H+ GNVYVQ++  + A  A  ++ GR++AG+ +  +F  +T ++ A C
Sbjct: 95  IESLNVCDNLADHMVGNVYVQFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIHCFR 122
            +Y ++   TC+ G  CNF+H  R
Sbjct: 155 RQYEEN---TCNRGGYCNFMHLKR 175


>Medtr2g084715.3 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35930729 | 20130731
          Length = 324

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           +    VC N + H+ GNVYVQ++  + A  A  ++ GR++AG+ +  +F  +T ++ A C
Sbjct: 95  IESLNVCDNLADHMVGNVYVQFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIHCFR 122
            +Y ++   TC+ G  CNF+H  R
Sbjct: 155 RQYEEN---TCNRGGYCNFMHLKR 175


>Medtr1g035130.6 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           V    VC N + H+ GNVYV +K  D A  A  S+ GR++ G+ +  +F  +T ++ A C
Sbjct: 95  VETLNVCDNLADHMIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++   +C+ G  CNF+H
Sbjct: 155 RQYEEN---SCNRGGYCNFMH 172


>Medtr1g035130.3 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           V    VC N + H+ GNVYV +K  D A  A  S+ GR++ G+ +  +F  +T ++ A C
Sbjct: 95  VETLNVCDNLADHMIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++   +C+ G  CNF+H
Sbjct: 155 RQYEEN---SCNRGGYCNFMH 172


>Medtr1g035130.1 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643125-12639099 | 20130731
          Length = 279

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           V    VC N + H+ GNVYV +K  D A  A  S+ GR++ G+ +  +F  +T ++ A C
Sbjct: 95  VETLNVCDNLADHMIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++   +C+ G  CNF+H
Sbjct: 155 RQYEEN---SCNRGGYCNFMH 172


>Medtr1g035130.4 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639099 | 20130731
          Length = 279

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           V    VC N + H+ GNVYV +K  D A  A  S+ GR++ G+ +  +F  +T ++ A C
Sbjct: 95  VETLNVCDNLADHMIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++   +C+ G  CNF+H
Sbjct: 155 RQYEEN---SCNRGGYCNFMH 172


>Medtr1g035130.2 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639591 | 20130731
          Length = 279

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           V    VC N + H+ GNVYV +K  D A  A  S+ GR++ G+ +  +F  +T ++ A C
Sbjct: 95  VETLNVCDNLADHMIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++   +C+ G  CNF+H
Sbjct: 155 RQYEEN---SCNRGGYCNFMH 172


>Medtr1g035130.5 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12641860 | 20130731
          Length = 279

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 39  VHHFQVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCEFINLTRWKVAIC 98
           V    VC N + H+ GNVYV +K  D A  A  S+ GR++ G+ +  +F  +T ++ A C
Sbjct: 95  VETLNVCDNLADHMIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATC 154

Query: 99  GEYMKSGFKTCSHGTACNFIH 119
            +Y ++   +C+ G  CNF+H
Sbjct: 155 RQYEEN---SCNRGGYCNFMH 172