Miyakogusa Predicted Gene

Lj0g3v0289179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0289179.1 Non Characterized Hit- tr|B9SIS9|B9SIS9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,41.24,0.00000000000005, ,CUFF.19335.1
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g032190.1 | agenet domain protein | HC | chr4:11055875-110...   157   5e-39

>Medtr4g032190.1 | agenet domain protein | HC |
           chr4:11055875-11068459 | 20130731
          Length = 448

 Score =  157 bits (397), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 93/178 (52%), Positives = 116/178 (65%), Gaps = 31/178 (17%)

Query: 1   MPMEDGCRRPCARIINTANSGGVVKIHATDGAVEVGQPTVRSYSSKKNEGILECTDGSVA 60
           MP E+GCR P ARI+N A+S         DG+V VGQ + R+                V 
Sbjct: 296 MPTEEGCRCP-ARIMNPASS---------DGSVNVGQSSYRT----------------VE 329

Query: 61  RKEQCDTSRNGMEIEESGNKFGGTCFSDSVLKSHIMDAPMENSERVAMNSGYNDE-YPAK 119
           R+EQ  +  N ++IEE+G+K GGT    S+  SHIMDA +EN ER A NS  ND+ YPAK
Sbjct: 330 RREQRSSVGNSVDIEEAGSKSGGT----SISSSHIMDASIENFERTASNSRCNDDDYPAK 385

Query: 120 RMRNIRSICLNSMSSNTIEAAILDLEELVNRIRWLRNMLNLGVPLSGTKRSSWEILHH 177
           +MR+  S+CLNSMSSNT+E+AILDLEELVN+I+WLR +L   VPLSG KR SWE L H
Sbjct: 386 KMRSNLSLCLNSMSSNTMESAILDLEELVNKIKWLRAVLKSEVPLSGAKRPSWEFLQH 443