Miyakogusa Predicted Gene

Lj0g3v0284669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284669.1 Non Characterized Hit- tr|I3S180|I3S180_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.47,0,coiled-coil,NULL; PNAS-RELATED,Uncharacterised conserved
protein UCP023322, transmembrane eukaryotic,CUFF.19151.1
         (189 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g085050.1 | transmembrane and coiled-coil protein | HC | c...   308   2e-84

>Medtr7g085050.1 | transmembrane and coiled-coil protein | HC |
           chr7:32878557-32877988 | 20130731
          Length = 189

 Score =  308 bits (788), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 155/189 (82%), Positives = 155/189 (82%)

Query: 1   MAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKT 60
           MAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKT
Sbjct: 1   MAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKT 60

Query: 61  DSQXXXXXXXXXXXXDRVETSLKESSRDLSLFKFKSXXXXXXXXXXXXXXXXXXXEGKVV 120
           DS             DRVETSLKESSRDLSLFKFKS                   EGKVV
Sbjct: 61  DSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVV 120

Query: 121 AKLPFKPFGLVMKMSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGL 180
           AKLPFKPFGLVMKMSHRGLQG DPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGA AGL
Sbjct: 121 AKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGL 180

Query: 181 FPMPDPKTS 189
           FPMPDPKTS
Sbjct: 181 FPMPDPKTS 189