Miyakogusa Predicted Gene
- Lj0g3v0282509.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0282509.1 Non Characterized Hit- tr|Q8H6I9|Q8H6I9_MAIZE
Putative oligouridylate binding protein OS=Zea mays
GN,26.96,0.000000000000003,RNA-binding domain, RBD,NULL; no
description,Nucleotide-binding, alpha-beta plait; seg,NULL;
RRM_1,R,CUFF.18812.1
(416 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 619 e-177
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 561 e-160
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 489 e-138
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 488 e-138
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 488 e-138
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 139 7e-33
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 136 4e-32
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 135 6e-32
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 135 8e-32
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 132 5e-31
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 132 8e-31
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 122 8e-28
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 103 2e-22
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 103 4e-22
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 100 2e-21
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 100 3e-21
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 100 3e-21
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 100 4e-21
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 98 1e-20
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 98 2e-20
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 98 2e-20
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 96 6e-20
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 93 4e-19
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 91 3e-18
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 90 4e-18
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 90 4e-18
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 82 8e-16
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 79 8e-15
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 77 3e-14
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 75 1e-13
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 75 2e-13
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 73 5e-13
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 72 1e-12
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 2e-11
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 3e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 4e-11
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 4e-11
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 66 6e-11
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 66 6e-11
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 9e-11
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 65 1e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 65 2e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 65 2e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 65 2e-10
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-10
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 63 6e-10
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 63 6e-10
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 60 4e-09
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 5e-09
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 5e-09
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 5e-09
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 5e-09
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 7e-09
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 8e-09
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 59 9e-09
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 58 2e-08
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 58 2e-08
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 57 3e-08
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 7e-08
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 8e-08
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 55 1e-07
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 54 2e-07
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 3e-07
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 4e-07
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 52 7e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 3e-06
Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 9e-06
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 619 bits (1596), Expect = e-177, Method: Compositional matrix adjust.
Identities = 310/417 (74%), Positives = 334/417 (80%), Gaps = 16/417 (3%)
Query: 1 MQPERLRQQAMM-QHSLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTD 59
M P++ RQ M+ QHSLY HPAL+TP QIEPI+SGNLPPGFDSSTCRSVYVGNIHPQV++
Sbjct: 1 MLPQKFRQNPMIEQHSLYQHPALITP-QIEPILSGNLPPGFDSSTCRSVYVGNIHPQVSE 59
Query: 60 SLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAY 119
LLQELF+ AGALEGCKLIRKEKSSYGFVDY+DRSSAA AIVTLNGRN+FGQ IKVNWAY
Sbjct: 60 PLLQELFSSAGALEGCKLIRKEKSSYGFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAY 119
Query: 120 ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSF 179
R QREDTSGHF+IFVGDLSPEVTDATLYACFSAY SCSDARVMWDQ+TGRSRGFGFVSF
Sbjct: 120 TRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSF 179
Query: 180 RNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTS-GSQEI 238
RNQQ+AQSAINDLTGKWLGSRQIRCNWA+KGAN N E QSS+SK+VVELT+GTS +QE+
Sbjct: 180 RNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEM 239
Query: 239 TNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTH 298
T+DD+PEKNPQYTTVYVGNLAPEVTSVDLH HFH+LG GTIEDVRVQRDKGFGFVRYSTH
Sbjct: 240 TSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRDKGFGFVRYSTH 299
Query: 299 AEAALAIQMGNARVLFGKPIKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXFSLASLAAY 358
EAALAIQMGN R LFGKPIKCSWGSK FS A LA Y
Sbjct: 300 GEAALAIQMGNTRFLFGKPIKCSWGSK-PTPPGTASTPLPPPASTHVPVPGFSPAGLALY 358
Query: 359 ERQMALSRMNGAHAALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTTQHLMYY 415
ERQ+ALS+MN AHA Y GF V TTQHLMYY
Sbjct: 359 ERQLALSKMNEAHAV------------KRAAMGMGALGAGYGAGFPNVATTQHLMYY 403
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 561 bits (1446), Expect = e-160, Method: Compositional matrix adjust.
Identities = 278/403 (68%), Positives = 310/403 (76%), Gaps = 10/403 (2%)
Query: 15 SLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEG 74
SLYH P LL PPQIEPI SGNLPPGFD STCRSVYVGN+H QVT+ LLQE+FAG G +EG
Sbjct: 32 SLYH-PGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEG 90
Query: 75 CKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIF 134
CKL RKEKSSYGF+ Y+DR SAA AI+TLNGR+LFGQPIKVNWAYA QREDTSGH+NIF
Sbjct: 91 CKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIF 150
Query: 135 VGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTG 194
VGDLSPEVTDATL+ACFS Y SCSDARVMWDQ+TGRSRGFGFVSFR+QQDAQSAINDLTG
Sbjct: 151 VGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTG 210
Query: 195 KWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTS-GSQEITNDDAPEKNPQYTTV 253
KWLGSRQIRCNWA+KGA +EKQ+SDSK+VVELTNG+S +EI+++D PE NPQYTTV
Sbjct: 211 KWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTV 270
Query: 254 YVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR-V 312
YVGNL E T +DLH+HFH+LGAG IE+VRVQRDKGFGFVRYSTHAEAALAIQMGNA+
Sbjct: 271 YVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSY 330
Query: 313 LFGKPIKCSWGSKXXXXXXXXXXXXXXXXXXXXXXXXFSLASLAAYERQMALSRMNGAHA 372
L GK IKCSWGSK S + AYERQ+A+S+M G HA
Sbjct: 331 LCGKIIKCSWGSK---PTPPGTASNPLPPPAAAPLPGLSATDILAYERQLAMSKMGGVHA 387
Query: 373 ALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTTQHLMYY 415
AL+ Q YD GFQ V Q +MYY
Sbjct: 388 ALMHPQAQH----PLKQAAIGASQAIYDGGFQNVAAAQQMMYY 426
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/414 (59%), Positives = 297/414 (71%), Gaps = 15/414 (3%)
Query: 16 LYHHPALLTPP---QIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGAL 72
+YHHP +L Q+EP+ SGNLPPGFD+S CRSVYVGNIH VTD LL E+F AG L
Sbjct: 11 MYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPL 70
Query: 73 EGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFN 132
GCKLIRKEKSSYGFVDY+DR+SAA AI+TL+GR L+GQ +KVNWAYA S REDTSGHFN
Sbjct: 71 AGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFN 130
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVGDLSPEVTDATL+ACFS Y +CSDARVMWD +TGRS+G+GFVSFR+ QDAQSAIND+
Sbjct: 131 VFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDM 190
Query: 193 TGKWLGSRQIRCNWASKGA-NANDEKQSSDSKNVVELTNGTS-GSQEITNDDAPEKNPQY 250
TGKWLG+RQIRCNWA+KGA +++E++ +DS+N V LTNG+S G Q+ +N+DAPE NP Y
Sbjct: 191 TGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY 250
Query: 251 TTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNA 310
TTVYVGNL +VT +LH FH+LGAG +E+VRVQ KGFGFVRY+TH EAA+AIQM N
Sbjct: 251 TTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANG 310
Query: 311 RVLFGKPIKCSWGSKXXXXXXXX------XXXXXXXXXXXXXXXXFSLASLAAYERQMAL 364
R + GK +KCSWGSK ++ A L AY+RQ+AL
Sbjct: 311 RPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLAL 370
Query: 365 SR--MNGAHA-ALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTTQHLMYY 415
S+ ++G ALLQ G YD G+ G + Q LMYY
Sbjct: 371 SQAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYD-GYAGNSSRQQLMYY 423
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/413 (59%), Positives = 296/413 (71%), Gaps = 15/413 (3%)
Query: 17 YHHPALLTPP---QIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALE 73
YHHP +L Q+EP+ SGNLPPGFD+S CRSVYVGNIH VTD LL E+F AG L
Sbjct: 28 YHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLA 87
Query: 74 GCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNI 133
GCKLIRKEKSSYGFVDY+DR+SAA AI+TL+GR L+GQ +KVNWAYA S REDTSGHFN+
Sbjct: 88 GCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNV 147
Query: 134 FVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLT 193
FVGDLSPEVTDATL+ACFS Y +CSDARVMWD +TGRS+G+GFVSFR+ QDAQSAIND+T
Sbjct: 148 FVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMT 207
Query: 194 GKWLGSRQIRCNWASKGA-NANDEKQSSDSKNVVELTNGTS-GSQEITNDDAPEKNPQYT 251
GKWLG+RQIRCNWA+KGA +++E++ +DS+N V LTNG+S G Q+ +N+DAPE NP YT
Sbjct: 208 GKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYT 267
Query: 252 TVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR 311
TVYVGNL +VT +LH FH+LGAG +E+VRVQ KGFGFVRY+TH EAA+AIQM N R
Sbjct: 268 TVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGR 327
Query: 312 VLFGKPIKCSWGSKXXXXXXXX------XXXXXXXXXXXXXXXXFSLASLAAYERQMALS 365
+ GK +KCSWGSK ++ A L AY+RQ+ALS
Sbjct: 328 PVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLALS 387
Query: 366 R--MNGAHA-ALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTTQHLMYY 415
+ ++G ALLQ G YD G+ G + Q LMYY
Sbjct: 388 QAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYD-GYAGNSSRQQLMYY 439
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 488 bits (1257), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/413 (59%), Positives = 296/413 (71%), Gaps = 15/413 (3%)
Query: 17 YHHPALLTPP---QIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALE 73
YHHP +L Q+EP+ SGNLPPGFD+S CRSVYVGNIH VTD LL E+F AG L
Sbjct: 28 YHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLA 87
Query: 74 GCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNI 133
GCKLIRKEKSSYGFVDY+DR+SAA AI+TL+GR L+GQ +KVNWAYA S REDTSGHFN+
Sbjct: 88 GCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNV 147
Query: 134 FVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLT 193
FVGDLSPEVTDATL+ACFS Y +CSDARVMWD +TGRS+G+GFVSFR+ QDAQSAIND+T
Sbjct: 148 FVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMT 207
Query: 194 GKWLGSRQIRCNWASKGA-NANDEKQSSDSKNVVELTNGTS-GSQEITNDDAPEKNPQYT 251
GKWLG+RQIRCNWA+KGA +++E++ +DS+N V LTNG+S G Q+ +N+DAPE NP YT
Sbjct: 208 GKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSYT 267
Query: 252 TVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR 311
TVYVGNL +VT +LH FH+LGAG +E+VRVQ KGFGFVRY+TH EAA+AIQM N R
Sbjct: 268 TVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGR 327
Query: 312 VLFGKPIKCSWGSKXXXXXXXX------XXXXXXXXXXXXXXXXFSLASLAAYERQMALS 365
+ GK +KCSWGSK ++ A L AY+RQ+ALS
Sbjct: 328 PVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYTAAELLAYQRQLALS 387
Query: 366 R--MNGAHA-ALLQQQGYQNXXXXXXXXXXXXXXXXYDTGFQGVGTTQHLMYY 415
+ ++G ALLQ G YD G+ G + Q LMYY
Sbjct: 388 QAAVSGLSGQALLQMSGQHGLAPASMGINSAASQAMYD-GYAGNSSRQQLMYY 439
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/307 (29%), Positives = 160/307 (52%), Gaps = 25/307 (8%)
Query: 26 PQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS- 84
P +P +PP + +++++G++ + ++ L F+ G + K+IR ++++
Sbjct: 54 PNAQPPQQSAVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQ 113
Query: 85 ---YGFVDYYDRSSAAFAIVTLNGRNL--FGQPIKVNWAYARS--QREDTSGHFNIFVGD 137
YGF+++ R+ A + T NG + GQ ++NWA S +R D S + IFVGD
Sbjct: 114 SEGYGFLEFISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGD 173
Query: 138 LSPEVTDATLYACF-SAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW 196
L+ +V+D L F + Y S A+V+ D+ TGR++G+GFV F ++ + A+ ++ G
Sbjct: 174 LAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVL 233
Query: 197 LGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVG 256
+R +R AS N N Q+S + N G+Q E +P TT++VG
Sbjct: 234 CSTRPMRIGPAS---NKNLGTQTSKAS----YQNPQGGAQN-------ENDPNNTTIFVG 279
Query: 257 NLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGK 316
NL P VT L Q F G + V++ K GFV+++ + A A+++ N +L G+
Sbjct: 280 NLDPNVTDEHLKQVFTQYGE--LVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQ 337
Query: 317 PIKCSWG 323
++ SWG
Sbjct: 338 NVRLSWG 344
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 28/194 (14%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELF-AGAGALEGCKLIRKEKSS----YGFVDYYDRSS 95
D S +++VG++ V+D L E+F +++G K++ + YGFV + D S
Sbjct: 162 DDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESE 221
Query: 96 AAFAIVTLNGRNLFGQPIKVNWAYAR-----------------SQREDTSGHFNIFVGDL 138
A+ + G +P+++ A + +Q E+ + IFVG+L
Sbjct: 222 QMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNL 281
Query: 139 SPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 198
P VTD L F+ Y ++ ++ G FV F ++ A+ A+ L G LG
Sbjct: 282 DPNVTDEHLKQVFTQYGELVHVKIPSGKRCG------FVQFADRSSAEEALRVLNGTLLG 335
Query: 199 SRQIRCNWASKGAN 212
+ +R +W AN
Sbjct: 336 GQNVRLSWGRSPAN 349
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGR 106
+++VGN+ P VTD L+++F G L K+ ++ GFV + DRSSA A+ LNG
Sbjct: 275 TIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRC--GFVQFADRSSAEEALRVLNGT 332
Query: 107 NLFGQPIKVNWAYARSQRE 125
L GQ ++++W + + ++
Sbjct: 333 LLGGQNVRLSWGRSPANKQ 351
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 149/290 (51%), Gaps = 28/290 (9%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAI 100
R++++G++ + ++ L F G L K+IR +++S YGF+++ R++A +
Sbjct: 59 VRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVL 118
Query: 101 VTLNGRNL--FGQPIKVNWAY----ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSA- 153
T NG + GQ ++NWA RS R+D IFVGDL+ +VTD L F A
Sbjct: 119 QTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRAR 178
Query: 154 YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANA 213
Y S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G +R +R A+ N
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATN-KNP 237
Query: 214 NDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS 273
Q S N SG Q E +P TT++VGNL P VT L Q F
Sbjct: 238 AATTQPKASYN-------PSGGQS-------ENDPNNTTIFVGNLDPNVTDDHLRQVFTQ 283
Query: 274 LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
G + V++ K GFV++S + A AI++ N +L G+ ++ SWG
Sbjct: 284 YGE--LVHVKIPSGKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWG 331
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 27/201 (13%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELF-AGAGALEGCKLI----RKEKSSYGFVDYYDRSS 95
D +++VG++ VTD LLQE F A +++G K++ YGFV + D
Sbjct: 150 DDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGE 209
Query: 96 AAFAIVTLNGRNLFGQPIKVNWAYARS----------------QREDTSGHFNIFVGDLS 139
A+ + G +P+++ A ++ Q E+ + IFVG+L
Sbjct: 210 QMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLD 269
Query: 140 PEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 199
P VTD L F+ Y ++ + GFV F ++ A+ AI L G LG
Sbjct: 270 PNVTDDHLRQVFTQYGELVHVKIP------SGKRCGFVQFSDRSCAEEAIRVLNGTLLGG 323
Query: 200 RQIRCNWASKGANANDEKQSS 220
+ +R +W +N ++ +
Sbjct: 324 QNVRLSWGRTPSNKQTQQDPT 344
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 150/294 (51%), Gaps = 19/294 (6%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAI 100
R++++G++H + ++ L FA G + K+IR +++ YGFV++Y R+ A +
Sbjct: 115 IRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVL 174
Query: 101 VTLNGRNL--FGQPIKVNWAY--------ARSQREDTSGHFNIFVGDLSPEVTDATLYAC 150
NG + Q ++NWA R E TS ++FVGDL+ +VTDA L
Sbjct: 175 QNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATS-DLSVFVGDLAIDVTDAMLQET 233
Query: 151 F-SAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASK 209
F S + S A+V+ D TGRS+G+GFV F ++ + A+ ++ G + SR +R A+
Sbjct: 234 FASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATP 293
Query: 210 GANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQ 269
+ +Q S S+ VV G + + E + TT++VG L +++ DL Q
Sbjct: 294 KKTYGNPQQYS-SQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQ 352
Query: 270 HFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
F L G + V++ KG GFV+ + A AIQ N V+ + ++ SWG
Sbjct: 353 PF--LQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWG 404
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 41/207 (19%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGA-GALEGCKLIRKEKSS----YGFVDYYDRSS 95
++++ SV+VG++ VTD++LQE FA +++G K++ + YGFV + D S
Sbjct: 209 EATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESE 268
Query: 96 AAFAIVTLNGRNLFGQPIKVNWAYAR------------------------------SQRE 125
A+ +NG +P++V A + SQ E
Sbjct: 269 RTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSE 328
Query: 126 DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA 185
S + IFVG L +++D L F + ++ +G GFV ++++A
Sbjct: 329 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIP------VGKGCGFVQLADRKNA 382
Query: 186 QSAINDLTGKWLGSRQIRCNWASKGAN 212
+ AI L G +G + +R +W N
Sbjct: 383 EEAIQGLNGTVIGKQTVRLSWGRSPGN 409
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/295 (29%), Positives = 150/295 (50%), Gaps = 28/295 (9%)
Query: 39 GFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDYYDRS 94
G ++ ++++VG++H + ++ L FA G + K+IR +++ YGFV++
Sbjct: 86 GSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHG 145
Query: 95 SAAFAIVTLNGRNLFG--QPIKVNWAYARS---QREDTSGHFNIFVGDLSPEVTDATLYA 149
+A + T G + QP ++NWA + +R D +IFVGDL+ +VTD L
Sbjct: 146 TAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLE 205
Query: 150 CFS-AYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAS 208
FS YPS A+V++D TGRS+G+GFV F + + A+N++ G + SR +R A+
Sbjct: 206 TFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAAT 265
Query: 209 KGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLH 268
++ ++ +NGT + + + TT++VG L P T+ DL
Sbjct: 266 PRKSSGYQQGGQ--------SNGTPSQSDTDSTN--------TTIFVGGLDPSATAEDLR 309
Query: 269 QHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
Q F G I V++ KG GFV+++ A A+Q N + + ++ SWG
Sbjct: 310 QPFSQYGE--IVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWG 362
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 26/186 (13%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGA-GALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
S++VG++ VTD++L E F+ +++ K++ + YGFV + D + A+
Sbjct: 188 SIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALN 247
Query: 102 TLNGRNLFGQPIKVNWAYAR---------------SQREDTSGHFNIFVGDLSPEVTDAT 146
+NG + +++ A R SQ + S + IFVG L P T
Sbjct: 248 EMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAED 307
Query: 147 LYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 206
L FS Y ++ +G GFV F N+ +A+ A+ L G +G + +R +W
Sbjct: 308 LRQPFSQYGEIVSVKIP------VGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSW 361
Query: 207 ASKGAN 212
AN
Sbjct: 362 GRNPAN 367
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 146/287 (50%), Gaps = 27/287 (9%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
+++++G++H + +S L FA G + K+IR + S YGF +++ ++A +
Sbjct: 97 KTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQ 156
Query: 102 TLNGRNL--FGQPIKVNWAYARS--QREDTSGHFNIFVGDLSPEVTDATLYACFSA-YPS 156
G + Q ++NWA + + D +IFVGDL+ +VTD+ L+ FS+ YPS
Sbjct: 157 NYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPS 216
Query: 157 CSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDE 216
A+V++D TGRS+G+GFV F ++ + A+ + G + SR +R A+ ++ +
Sbjct: 217 VKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQ 276
Query: 217 KQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGA 276
+NGTS E + + TT++VG L VT DL Q F G
Sbjct: 277 PGGQ--------SNGTSSQSEADSTN--------TTIFVGGLDSNVTDEDLKQTFSQYGE 320
Query: 277 GTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
I V++ KG GFV+++ A A+Q N ++ + ++ SWG
Sbjct: 321 --IASVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWG 365
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 26/193 (13%)
Query: 39 GFDSSTCRSVYVGNIHPQVTDSLLQELFAGA-GALEGCKLIRKEKSS----YGFVDYYDR 93
G D+ T S++VG++ VTDS+L E F+ + +++ K++ + YGFV + D
Sbjct: 183 GSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDE 242
Query: 94 SSAAFAIVTLNGRNLFGQPIKVNWAYAR---------------SQREDTSGHFNIFVGDL 138
S + A+ +NG +P+++ A R SQ E S + IFVG L
Sbjct: 243 SERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGL 302
Query: 139 SPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 198
VTD L FS Y + ++ +G GFV F N+ +A+ A+ L G +G
Sbjct: 303 DSNVTDEDLKQTFSQYGEIASVKIP------VGKGCGFVQFANRNNAEEALQKLNGTMIG 356
Query: 199 SRQIRCNWASKGA 211
+ +R +W A
Sbjct: 357 KQTVRLSWGRNPA 369
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 146/293 (49%), Gaps = 16/293 (5%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK----EKSSYGFVDYYDRSSAAFAI 100
R++++G++ V ++ L F+ G + K+IR + YGF+++ S+A +
Sbjct: 14 VRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVL 73
Query: 101 VTLNGRNLFG--QPIKVNWAY--ARSQREDTSGHFNIFVGDLSPEVTDATLYACF-SAYP 155
T NG + G Q ++NWA +R D +IFVGDL+P+VTD L F + Y
Sbjct: 74 QTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYG 133
Query: 156 SCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANAND 215
S A+V+ D TGRS+G+GFV F ++ + A++++ G + +R +R + A+
Sbjct: 134 SVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGY 193
Query: 216 EKQSSDSKNVVELTNGT-----SGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQH 270
++ + + + N PE + TT+YVGNL V+ +L Q+
Sbjct: 194 QQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQN 253
Query: 271 FHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
F L G I V+V K GFV++ A A AIQ ++L + I+ SWG
Sbjct: 254 F--LQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWG 304
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 16 LYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGC 75
+Y PA T P +PP +D + ++YVGN+ V++ L++ F G +
Sbjct: 211 IYPVPAYTTAP------VNTVPPEYDVNNT-TIYVGNLDLNVSEEELKQNFLQFGEIVSV 263
Query: 76 KLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSG 129
K+ + GFV + R+SA AI + G+ L Q I+V+W ++ R+D G
Sbjct: 264 KV--HPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQTARQDVPG 315
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 111/192 (57%), Gaps = 8/192 (4%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKL----IRKEKSSYGFVDYYDRSSAAFAIVT 102
+ YVGN+ PQ+++ LL ELF AG + + + + YGFV++ A +AI
Sbjct: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPS-CSDAR 161
LN L+G+PI+VN A + D N+F+G+L P+V + LY FSA+ ++ +
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
Query: 162 VMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSD 221
+M D TG SRGFGF+S+ + + + SAI + G++L +RQI ++A K + E+ +
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYK-KDTKGERHGTP 202
Query: 222 SKNVVELTNGTS 233
++ V+ +N T+
Sbjct: 203 AERVLAASNPTA 214
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 99/227 (43%), Gaps = 51/227 (22%)
Query: 105 GRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMW 164
G NL GQ ++ + +D + +VG+L P++++ L+ F + V
Sbjct: 10 GANLLGQ-------HSAERNQDATA----YVGNLDPQISEELLWELFVQAGPVVNVYVPK 58
Query: 165 DQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKN 224
D+ T + +G+GFV FR+++DA AI L L + IR N AS+ +K+S D
Sbjct: 59 DRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ------DKKSLDVG- 111
Query: 225 VVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV 284
+++GNL P+V L+ F + G + + ++
Sbjct: 112 --------------------------ANLFIGNLDPDVDEKLLYDTFSAFGV-IVTNPKI 144
Query: 285 QRD------KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGSK 325
RD +GFGF+ Y + + AI+ N + L + I S+ K
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYK 191
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 110/208 (52%), Gaps = 14/208 (6%)
Query: 39 GFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDYYDRS 94
G ++ ++++VG++H + ++ L FA G + K+IR +++ YGFV++
Sbjct: 86 GSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHG 145
Query: 95 SAAFAIVTLNGRNLFG--QPIKVNWAYARS---QREDTSGHFNIFVGDLSPEVTDATLYA 149
+A + T G + QP ++NWA + +R D +IFVGDL+ +VTD L
Sbjct: 146 TAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTMLLE 205
Query: 150 CFS-AYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA- 207
FS YPS A+V++D TGRS+G+GFV F + + A+N++ G + SR +R A
Sbjct: 206 TFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAAT 265
Query: 208 ---SKGANANDEKQSSDSKNVVELTNGT 232
S G + + S++ + TN T
Sbjct: 266 PRKSSGYQQGGQSNGTPSQSDTDSTNTT 293
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 35/184 (19%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VGDL + + L+ CF++ +V+ ++QT ++ G+GFV F + A+ +
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 193 TGKWLGSRQ--IRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQY 250
G + + + R NWA+ + D K+S NV +L+
Sbjct: 155 AGMLMPNTEQPFRLNWAT--FSTGDHKRSD---NVPDLS--------------------- 188
Query: 251 TTVYVGNLAPEVTSVDLHQHFHSL-----GAGTIEDVRVQRDKGFGFVRYSTHAEAALAI 305
++VG+LA +VT L + F A + D R KG+GFVR+ E + A+
Sbjct: 189 --IFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKAL 246
Query: 306 QMGN 309
N
Sbjct: 247 NEMN 250
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 120/261 (45%), Gaps = 41/261 (15%)
Query: 44 TCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIR----KEKSSYGFVDYYDRSSAAFA 99
T S+YVG++ VTDS L +LF G + ++ R ++ YG+V++ + AA A
Sbjct: 22 TTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKA 81
Query: 100 IVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSD 159
+ LN L +PI++ +++ R SG NIF+ +L + LY FS + +
Sbjct: 82 MDVLNFTPLNNKPIRIMYSH-RDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILS 140
Query: 160 ARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQS 219
++ D +G S+G+GFV F N++ AQSAI+ L G L + + + KQ
Sbjct: 141 CKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQR-------KQD 192
Query: 220 SDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTI 279
D N S N ++ VYV NL+ VT DL F GTI
Sbjct: 193 RD--------NALS-------------NAKFNNVYVKNLSESVTDDDLKNTFGEY--GTI 229
Query: 280 EDVRVQRD-----KGFGFVRY 295
V RD K FGFV +
Sbjct: 230 TSAVVMRDVDGKSKCFGFVNF 250
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 134/307 (43%), Gaps = 32/307 (10%)
Query: 31 IMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEK---SSYGF 87
IM + P S ++++ N+ + L + F+ G + CK+ YGF
Sbjct: 97 IMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDASGLSKGYGF 156
Query: 88 VDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQRED---TSGHFN-IFVGDLSPEVT 143
V + + SA AI LNG L +P+ V + R Q D ++ FN ++V +LS VT
Sbjct: 157 VQFENEESAQSAIDKLNGMLLNDKPVYVGH-FQRKQDRDNALSNAKFNNVYVKNLSESVT 215
Query: 144 DATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 203
D L F Y + + A VM D G+S+ FGFV+F N A A+ L GK ++
Sbjct: 216 DDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWY 274
Query: 204 CNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVT 263
A K E + +++ E + G+ +Y+ NL VT
Sbjct: 275 VGKALKKYERELELKERHEQSMKETVDKFYGA----------------NLYLKNLDDSVT 318
Query: 264 SVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPI 318
L + F G T+ ++ RD +G GFV +ST EA A+ N +++ GKP+
Sbjct: 319 DEKLSELFSEFG--TVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPL 376
Query: 319 KCSWGSK 325
+ K
Sbjct: 377 YVAPAQK 383
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 44/299 (14%)
Query: 36 LPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYY 91
+PP S+T S+YVG++HP ++DS L + F+ L ++ R S YG+V++
Sbjct: 3 VPP---SATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFL 59
Query: 92 DRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACF 151
A AI N L G+ I+V W+ R S N+FV +L+ + ++ L F
Sbjct: 60 SPHDAIRAIEVKNHSTLNGKAIRVMWSR-RDPDARKSCIGNVFVKNLAESIDNSGLEDMF 118
Query: 152 SAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGA 211
+ + ++V+ + G+S+G+GFV F ++ A +AI L G +G +QI + K
Sbjct: 119 KKFGNILSSKVVMSED-GKSKGYGFVQFETEESANAAIERLNGYLVGDKQI---YVGKFV 174
Query: 212 NANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHF 271
+D S + +YT +Y+ NL +++ L + F
Sbjct: 175 KKSDRISSG-------------------------PDTRYTNLYMKNLDLDISETLLREKF 209
Query: 272 HSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGSK 325
S G I + V +D KGFGFV + +A A++ N L K + + K
Sbjct: 210 SSF--GKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQK 266
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 134/305 (43%), Gaps = 42/305 (13%)
Query: 38 PGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKE---KSSYGFVDYYDRS 94
P S +V+V N+ + +S L+++F G + K++ E YGFV +
Sbjct: 90 PDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEE 149
Query: 95 SAAFAIVTLNGRNLFGQPIKVNWAYARSQREDT---SGHFNIFVGDLSPEVTDATLYACF 151
SA AI LNG + + I V +S R + + + N+++ +L ++++ L F
Sbjct: 150 SANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKF 209
Query: 152 SAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGA 211
S++ V D G S+GFGFV+F N +DA+ A+ + G LGS+ + A K A
Sbjct: 210 SSFGKIISLAVAKDS-NGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKA 268
Query: 212 NANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQY------TTVYVGNLAPEVTSV 265
++I + EK + + +YV N+ V+
Sbjct: 269 E----------------------REQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDE 306
Query: 266 DLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKC 320
L HF GTI ++ RD KGFGFV +ST EA A+ + + GKP+
Sbjct: 307 GLRDHFSV--CGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYV 364
Query: 321 SWGSK 325
S +
Sbjct: 365 SLAQR 369
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 130/279 (46%), Gaps = 41/279 (14%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIR----KEKSSYGFVDYYDRSSAAFAIVT 102
S+YVG++ VTDS L +LF G + ++ R + YG+V+Y + AA A+
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 94
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARV 162
LN L +PI++ +++ R SG NIF+ +L + L+ FS++ + +V
Sbjct: 95 LNFTPLNNRPIRIMYSH-RDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKV 153
Query: 163 MWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDS 222
D +G+S+G+GFV F ++ AQ AI L G L +Q+ + KQ +S
Sbjct: 154 AVDG-SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLR-------KQERES 205
Query: 223 KNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV 282
T D A ++ V+V NL+ T +L + F GTI
Sbjct: 206 ----------------TGDRA-----KFNNVFVKNLSESTTDDELKKTFGEF--GTITSA 242
Query: 283 RVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGK 316
V RD K FGFV + + +AA A++ N + + K
Sbjct: 243 VVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDK 281
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 134/306 (43%), Gaps = 30/306 (9%)
Query: 31 IMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK---EKSSYGF 87
IM + P S ++++ N+ + L + F+ G + CK+ + YGF
Sbjct: 107 IMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYGF 166
Query: 88 VDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQRE---DTSGHFNIFVGDLSPEVTD 144
V + +A AI LNG L + + V + +RE D + N+FV +LS TD
Sbjct: 167 VQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKNLSESTTD 226
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 204
L F + + + A VM D G+S+ FGFV+F + DA A+ L GK + ++
Sbjct: 227 DELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYV 285
Query: 205 NWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTS 264
A K + E + +++ E + G+ +YV NL +
Sbjct: 286 GKAQKKSEREHELKIKFEQSMKEAADKYQGA----------------NLYVKNLDDSIAD 329
Query: 265 VDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPIK 319
L + F S GTI +V RD +G GFV +ST EA+ A+ N +++ KP+
Sbjct: 330 EKLKELFSSY--GTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLY 387
Query: 320 CSWGSK 325
+ +
Sbjct: 388 VTLAQR 393
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 106/200 (53%), Gaps = 13/200 (6%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
+++++G++H + +S L FA G + K+IR + S YGF +++ ++A +
Sbjct: 97 KTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQ 156
Query: 102 TLNGRNL--FGQPIKVNWAYARS--QREDTSGHFNIFVGDLSPEVTDATLYACFSA-YPS 156
G + Q ++NWA + + D +IFVGDL+ +VTD+ L+ FS+ YPS
Sbjct: 157 NYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPS 216
Query: 157 CSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA----SKGAN 212
A+V++D TGRS+G+GFV F ++ + A+ + G + SR +R A S G
Sbjct: 217 VKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQ 276
Query: 213 ANDEKQSSDSKNVVELTNGT 232
+ + S++ + TN T
Sbjct: 277 PGGQSNGTSSQSEADSTNTT 296
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 36/195 (18%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+++GDL + ++ L+ CF++ + +V+ ++ +G S G+GF F + A+ + +
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 193 TGKWL--GSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQY 250
G + + R NWA+ + G GS +T+
Sbjct: 159 AGILMPNADQAFRLNWAT-------------------FSTGDKGSDNVTD---------- 189
Query: 251 TTVYVGNLAPEVTSVDLHQHFHS-----LGAGTIEDVRVQRDKGFGFVRYSTHAEAALAI 305
+++VG+LA +VT LH+ F S A + D R KG+GFVR+ +E + A+
Sbjct: 190 LSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAM 249
Query: 306 QMGNARVLFGKPIKC 320
N +P++
Sbjct: 250 TQMNGVYCSSRPMRI 264
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 129/283 (45%), Gaps = 51/283 (18%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVT 102
S+YVG++ V D+ L +LF+ + ++ R + + YG+V+Y + AA A+
Sbjct: 26 SLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMEN 85
Query: 103 LNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARV 162
LN L G+PI++ +++ R +G N+F+ +L + + L+ FS + + +V
Sbjct: 86 LNYVPLNGKPIRIMFSH-RDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKV 144
Query: 163 MWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDS 222
D G S+G GFV F N Q A++AI L G + +++ + +
Sbjct: 145 AMDS-NGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVR------------- 190
Query: 223 KNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDV 282
QE +P++T VYV NL+ T DL Q F+S G I V
Sbjct: 191 ------------CQE-------RSSPKFTNVYVKNLSESYTYEDLKQLFNSF--GVITSV 229
Query: 283 RVQR-----DKGFGFVRYSTHAEAALAIQMGN------ARVLF 314
+ + K FGFV + + AA A++ N +VLF
Sbjct: 230 LIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNGSTTNDGKVLF 272
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 105/219 (47%), Gaps = 22/219 (10%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS---YGFVDYYDRSSAAFAIVTL 103
+VYV N+ T L++LF G + +++ + + +GFV++ SAA A+ L
Sbjct: 201 NVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKL 260
Query: 104 NGRNLF-GQPIKVNWAYARSQREDTSGHF---------------NIFVGDLSPEVTDATL 147
NG G+ + V A +S+RE F N+++ ++ + + L
Sbjct: 261 NGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKL 320
Query: 148 YACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 207
FS + + + +VM D + GRS+G GFV+F ++A AI+++ GK +G + + + A
Sbjct: 321 KELFSEFGTITSCKVMSDAR-GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVA 379
Query: 208 SKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEK 246
+ + Q+ S ++++ G +G AP++
Sbjct: 380 QRKEERKAQLQAHFS--AIQVSGGNAGYHSSVQRLAPQQ 416
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 132/299 (44%), Gaps = 29/299 (9%)
Query: 31 IMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRK---EKSSYGF 87
+M + P S ++++ N+ + L + F+ G + CK+ + YGF
Sbjct: 105 VMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYGF 164
Query: 88 VDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDT---SGHFNIFVGDLSPEVTD 144
V + SA AI LNG + + + V + R++ + N++V +LS T+
Sbjct: 165 VQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTE 224
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 204
L F AY + + A +M D GRS+ FGFV+F N +DA A+ L GK + ++
Sbjct: 225 DDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDAAKAVEALNGKKVDDKE--- 280
Query: 205 NWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTS 264
W A E++ G E T ++ Q +Y+ NL +T
Sbjct: 281 -WYVGKAQKKSEREQE-----------LKGRFEQTVKESVVDKFQGLNLYLKNLDDSITD 328
Query: 265 VDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPI 318
L + F GTI ++ RD +G GFV +ST EA+ A+ N +++ KP+
Sbjct: 329 EKLKEMFSEF--GTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPL 385
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 41/297 (13%)
Query: 24 TPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIR---- 79
TP + +G +P + S+YVG++ V DS L +LF G + ++ R
Sbjct: 10 TPAPVPAPSNGVVPNVANQFVTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLAT 69
Query: 80 KEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLS 139
+ YG+V++ + AA A+ LN + + I+V +++ R SG NIF+ +L
Sbjct: 70 RRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMYSH-RDPSSRKSGTANIFIKNLD 128
Query: 140 PEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 199
+ L+ FS++ ++ D +G+S+G+GFV F + AQ+AI+ L G +
Sbjct: 129 KTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKLNGMLIND 187
Query: 200 RQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLA 259
+Q+ + KQ D NV+ T ++ VYV NL+
Sbjct: 188 KQVFVGHFLR-------KQDRD--NVLSKT-------------------KFNNVYVKNLS 219
Query: 260 PEVTSVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNAR 311
T DL F + GTI + RD K FGFV + +AA A++ N +
Sbjct: 220 ESFTEDDLKNEFGAY--GTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGK 274
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 11/175 (6%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAI 100
R++++G++ + ++ L F G L K+IR +++S YGF+++ R++A +
Sbjct: 59 VRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVL 118
Query: 101 VTLNGRNL--FGQPIKVNWAY----ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSA- 153
T NG + GQ ++NWA RS R+D IFVGDL+ +VTD L F A
Sbjct: 119 QTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRAR 178
Query: 154 YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAS 208
Y S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G +R +R A+
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 34/194 (17%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+++GDL + + LY CF + +V+ ++QT +S G+GF+ F + A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 193 TGKWL--GSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQY 250
G + G + R NWA+ A +Q DD P+
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQ----------------------DDGPDH---- 155
Query: 251 TTVYVGNLAPEVTSVDLHQHFHSL-----GAGTIEDVRVQRDKGFGFVRYSTHAEAALAI 305
T++VG+LA +VT L + F + GA + D R KG+GFVR++ E A+
Sbjct: 156 -TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAM 214
Query: 306 QMGNARVLFGKPIK 319
+ +P++
Sbjct: 215 TEMQGVLCSTRPMR 228
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 97/175 (55%), Gaps = 11/175 (6%)
Query: 45 CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAI 100
R++++G++ + ++ L F G L K+IR +++S YGF+++ R++A +
Sbjct: 59 VRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVL 118
Query: 101 VTLNGRNL--FGQPIKVNWAY----ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSA- 153
T NG + GQ ++NWA RS R+D IFVGDL+ +VTD L F A
Sbjct: 119 QTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRAR 178
Query: 154 YPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAS 208
Y S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G +R +R A+
Sbjct: 179 YNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPAT 233
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 34/194 (17%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+++GDL + + LY CF + +V+ ++QT +S G+GF+ F + A+ +
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 193 TGKWL--GSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQY 250
G + G + R NWA+ A +Q DD P+
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQ----------------------DDGPDH---- 155
Query: 251 TTVYVGNLAPEVTSVDLHQHFHSL-----GAGTIEDVRVQRDKGFGFVRYSTHAEAALAI 305
T++VG+LA +VT L + F + GA + D R KG+GFVR++ E A+
Sbjct: 156 -TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAM 214
Query: 306 QMGNARVLFGKPIK 319
+ +P++
Sbjct: 215 TEMQGVLCSTRPMR 228
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 95/169 (56%), Gaps = 11/169 (6%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIV 101
R++++G++ + ++ L F G L K+IR +++S YGF+++ R++A +
Sbjct: 60 RTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQ 119
Query: 102 TLNGRNL--FGQPIKVNWAY----ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSA-Y 154
T NG + GQ ++NWA RS R+D IFVGDL+ +VTD L F A Y
Sbjct: 120 TYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLLQETFRARY 179
Query: 155 PSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 203
S A+V+ D+ TGRS+G+GFV F ++ + A+ ++ G +R +R
Sbjct: 180 NSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMR 228
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 34/195 (17%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+++GDL + + LY CF + +V+ ++QT +S G+GF+ F + A+ +
Sbjct: 61 TLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQT 120
Query: 192 LTGKWL--GSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
G + G + R NWA+ A +Q DD P+
Sbjct: 121 YNGTIMPNGGQNYRLNWATFSAGERSSRQ----------------------DDGPDH--- 155
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSL-----GAGTIEDVRVQRDKGFGFVRYSTHAEAALA 304
T++VG+LA +VT L + F + GA + D R KG+GFVR++ E A
Sbjct: 156 --TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 305 IQMGNARVLFGKPIK 319
+ + +P++
Sbjct: 214 MTEMQGVLCSTRPMR 228
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 126/274 (45%), Gaps = 41/274 (14%)
Query: 42 SSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAA 97
+S ++YVG++H VTD+ L + F+ L ++ + + YG+V+ A
Sbjct: 11 ASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAI 70
Query: 98 FAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSC 157
AI N +L G+ I+V W +R SG N+FV +L+ + + L+ F Y +
Sbjct: 71 RAIELKNHSSLNGKVIRVMW-LSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNI 129
Query: 158 SDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEK 217
+++ + G+S+GFG++ F +++ A AI + G + +QI + K ++
Sbjct: 130 LSSKIARSED-GKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQI---YVGKFIRKSER- 184
Query: 218 QSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAG 277
P+ + ++T +YV NL P VT L + F S G
Sbjct: 185 ------------------------SLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSF--G 218
Query: 278 TIEDVRVQRD-----KGFGFVRYSTHAEAALAIQ 306
I + +++D KGFGFV Y + +A A++
Sbjct: 219 KIVSLAIKKDENGQSKGFGFVNYDSPDDARRAME 252
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 38/292 (13%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKE---KSSYGFVDYYDRSSAAFAIVTL 103
+V+V N+ + + L +LF G + K+ R E +G++ + SA AI +
Sbjct: 104 NVFVKNLAASIDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 104 NGRNLFGQPIKVNWAYARSQRE--DTSGHF-NIFVGDLSPEVTDATLYACFSAYPSCSDA 160
NG + + I V +S+R D F N++V +L P VT+ L FS++
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSL 223
Query: 161 RVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSS 220
+ D+ G+S+GFGFV++ + DA+ A+ + G GS+ + A K
Sbjct: 224 AIKKDE-NGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVE-------- 274
Query: 221 DSKNVVELTNGTSGSQEITNDDAPEKNPQY--TTVYVGNLAPEVTSVDLHQHFHSLGAGT 278
++I + EK ++ + +YV N+ V +L HF + G
Sbjct: 275 --------------REQILHHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFSA--CGE 318
Query: 279 IEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWGSK 325
+ +V RD KGFGFV +ST EA ++ N + GKP+ + K
Sbjct: 319 VLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQK 370
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 129/299 (43%), Gaps = 44/299 (14%)
Query: 38 PGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS---YGFVDYYDRS 94
P + +V+V N+ + + +L + FA G + CK+ YGFV Y +
Sbjct: 7 PSIRKTGFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSNGKSLGYGFVQYDNHE 66
Query: 95 SAAFAIVTLNGRNLFGQPIKVNWAYARSQR-EDTSGHF-NIFVGDLSPEVTDATLYACFS 152
SA AI L+G + + V + R +R E+ S F N++V +L TD L FS
Sbjct: 67 SAKCAIEKLDGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLFS 126
Query: 153 AYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGK--------WLGSRQIRC 204
Y + A +M D + G S+ FGFV+F++ A +A+ L G ++G Q +C
Sbjct: 127 TYGVITSAVIMKD-ENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKC 185
Query: 205 NWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTS 264
+ A + + K +L Q +Y+ NL +
Sbjct: 186 ---EREAELRAKFEQEKIKRYEKL--------------------QGANLYLKNLDESIND 222
Query: 265 VDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNARVLFGKPI 318
L + F GTI +V D KGFGFV +ST EA+ AI + +++ KP+
Sbjct: 223 EKLKEMFSEF--GTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPL 279
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 133/286 (46%), Gaps = 53/286 (18%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKE--KSS--YGFVDYYDRSSAAFAIVT 102
S+YVG++ V + L +LF+ + ++ R + +SS Y +V++ + AA A
Sbjct: 31 SLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKEL 90
Query: 103 LNGRNLFGQPIKVNWAYARSQREDT---SGHFNIFVGDLSPEVTDATLYACFSAYPSCSD 159
LN L +PI++ + SQR+ + SG N+F+ +L + L+ F+A+
Sbjct: 91 LNFTPLNEKPIRIMF----SQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLS 146
Query: 160 ARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQS 219
+V D G+S+G+GFV F N++ A+SAI L G + +Q+ + + + E+
Sbjct: 147 CKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVR----HQERAR 201
Query: 220 SDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTI 279
TNG+ P++T VYV N++ T DL Q F G I
Sbjct: 202 ---------TNGS---------------PKFTNVYVKNISEASTDEDLKQLFGPF--GMI 235
Query: 280 EDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNA------RVLF 314
V +D + FGFV + + AA A++ N +VLF
Sbjct: 236 TSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLF 281
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 33/310 (10%)
Query: 23 LTPPQIEPI--MSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI-- 78
TP +PI M P S +V++ N+ + L + FA G + CK+
Sbjct: 93 FTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD 152
Query: 79 -RKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGH---FNIF 134
+ YGFV + + +A AI L+G + + + V + +R T+G N++
Sbjct: 153 GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVY 212
Query: 135 VGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTG 194
V ++S TD L F + + A VM D G+SR FGFV+F++ A +A+ L G
Sbjct: 213 VKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKLNG 271
Query: 195 KWLGSRQIR-CNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTV 253
+ ++ A + A +E ++ + + G+ +
Sbjct: 272 TAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGA----------------NL 315
Query: 254 YVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMG 308
Y+ NL + L F G T+ RV D KG GFV +ST EA A+
Sbjct: 316 YLKNLDDDFNEEKLKDLFSEFG--TVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEM 373
Query: 309 NARVLFGKPI 318
N +++ KP+
Sbjct: 374 NGKLVGRKPL 383
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 133/286 (46%), Gaps = 53/286 (18%)
Query: 47 SVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKE--KSS--YGFVDYYDRSSAAFAIVT 102
S+YVG++ V + L +LF+ + ++ R + +SS Y +V++ + AA A
Sbjct: 31 SLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKEL 90
Query: 103 LNGRNLFGQPIKVNWAYARSQREDT---SGHFNIFVGDLSPEVTDATLYACFSAYPSCSD 159
LN L +PI++ + SQR+ + SG N+F+ +L + L+ F+A+
Sbjct: 91 LNFTPLNEKPIRIMF----SQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLS 146
Query: 160 ARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQS 219
+V D G+S+G+GFV F N++ A+SAI L G + +Q+ + + + E+
Sbjct: 147 CKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVR----HQERAR 201
Query: 220 SDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTI 279
TNG+ P++T VYV N++ T DL Q F G I
Sbjct: 202 ---------TNGS---------------PKFTNVYVKNISEASTDEDLKQLFGPF--GMI 235
Query: 280 EDVRVQRD-----KGFGFVRYSTHAEAALAIQMGNA------RVLF 314
V +D + FGFV + + AA A++ N +VLF
Sbjct: 236 TSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAINDDKVLF 281
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 130/310 (41%), Gaps = 33/310 (10%)
Query: 23 LTPPQIEPI--MSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI-- 78
TP +PI M P S +V++ N+ + L + FA G + CK+
Sbjct: 93 FTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD 152
Query: 79 -RKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGH---FNIF 134
+ YGFV + + +A AI L+G + + + V + +R T+G N++
Sbjct: 153 GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVY 212
Query: 135 VGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTG 194
V ++S TD L F + + A VM D G+SR FGFV+F++ A +A+ L G
Sbjct: 213 VKNISEASTDEDLKQLFGPFGMITSATVMKDA-NGKSRCFGFVNFQSPDSAAAAVEKLNG 271
Query: 195 KWLGSRQIR-CNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTTV 253
+ ++ A + A +E ++ + + G+ +
Sbjct: 272 TAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGA----------------NL 315
Query: 254 YVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD-----KGFGFVRYSTHAEAALAIQMG 308
Y+ NL + L F G T+ RV D KG GFV +ST EA A+
Sbjct: 316 YLKNLDDDFNEEKLKDLFSEFG--TVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEM 373
Query: 309 NARVLFGKPI 318
N +++ KP+
Sbjct: 374 NGKLVGRKPL 383
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VGN V L LF AG +E ++I ++ +GFV A A+
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 104 NGRNLFGQPIKVNWAYARSQREDTSGH--------FNIFVGDLSPEVTDATLYACFSAYP 155
NG + G+ + VN A + R + + I+V +L+ EV ++ L FS +
Sbjct: 171 NGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEHG 230
Query: 156 SCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 207
ARV++D++TGRSRGFGFV+ ++ + AI L G+ L R IR + A
Sbjct: 231 KIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVA 282
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 80/194 (41%), Gaps = 27/194 (13%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+FVG+ +V L F + A V++++QT SRGFGFV+ ++A+SA+
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 192 LTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYT 251
G R + N AS GS+ + AP
Sbjct: 170 FNGYDYNGRSLVVNKASP-----------------------KGSRPERTERAPRTFEPVL 206
Query: 252 TVYVGNLAPEVTSVDLHQHFHSLG----AGTIEDVRVQRDKGFGFVRYSTHAEAALAIQM 307
+YV NLA EV + L Q F G A + D R +GFGFV S E AI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 308 GNARVLFGKPIKCS 321
+ + L G+ I+ S
Sbjct: 267 LDGQSLEGRTIRVS 280
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 9/171 (5%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VGN+ V L +LF +G +E ++I + +GFV A+
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 104 NGRNLFGQPIKVNWAYAR-SQREDTSGHFN----IFVGDLSPEVTDATLYACFSAYPSCS 158
+G L G+ + VN A R + R FN +VG+L +V +++L FS +
Sbjct: 184 SGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVE 243
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASK 209
A+V++D++TGRSRGFGFV+ N+ + AI L G+ R IR N A +
Sbjct: 244 SAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEE 294
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 125 EDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQD 184
E+ S IFVG+L +V L F + A V++++ T RSRGFGFV+ ++
Sbjct: 116 EEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEE 175
Query: 185 AQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAP 244
+ A+N +G L R + N A+ GT ++ P
Sbjct: 176 VERAVNKFSGFELDGRLLTVNKAAP--------------------RGTPRLRQ------P 209
Query: 245 EKNPQYTTVYVGNLAPEVTSVDLHQHFHSLG----AGTIEDVRVQRDKGFGFVRYSTHAE 300
YVGNL +V + L Q F G A + D R +GFGFV S AE
Sbjct: 210 RTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAE 269
Query: 301 AALAIQMGNARVLFGKPIKCS 321
AI + + G+ I+ +
Sbjct: 270 MNDAIAALDGQSFNGRAIRVN 290
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLI----RKEKSSYGFVDYYDRSSA 96
DS R +YVGNI V++ L+++ GA+E +++ K + FV A
Sbjct: 55 DSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDA 114
Query: 97 AFAIVTLNGRNLFGQPIKVNWAYARSQRED----------TSGHFNIFVGDLSPEVTDAT 146
A LNG + G+ IKVN E + ++VG+L+ VT +
Sbjct: 115 NAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDS 174
Query: 147 LYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 206
L FS + A+V T +S GFGFV+F + +D ++AI+ L ++IR N
Sbjct: 175 LKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVNK 234
Query: 207 A 207
A
Sbjct: 235 A 235
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 87/196 (44%), Gaps = 33/196 (16%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG++ V++ L + + A VM+D+ + RSR F FV+ + +DA +A L
Sbjct: 62 LYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKL 121
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSG----SQEITNDDAPEKNP 248
G +G R+I+ N K LT T G + E T D+P K
Sbjct: 122 NGTEIGGREIKVNITEK-----------------PLT--TEGLPVQAGESTFVDSPYK-- 160
Query: 249 QYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVR----VQRDKGFGFVRYSTHAEAALA 304
VYVGNLA VTS L + F G V + GFGFV +S+ + A
Sbjct: 161 ----VYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAA 216
Query: 305 IQMGNARVLFGKPIKC 320
I N +L G+ I+
Sbjct: 217 ISSFNNALLEGQKIRV 232
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKL----IRKEKSSYGFVDYYDRSSA 96
+S+ R ++VGN+ ++ S L +LF AG + ++ I + FV + A
Sbjct: 103 ESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDA 162
Query: 97 AFAIVTLNGRNLFGQPIKVNWAYA-----RSQREDT------SGHFNIFVGDLSPEVTDA 145
AI +G + G+ IKVN+ R Q T S H I+ G+L ++T
Sbjct: 163 EEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH-KIYAGNLGWDMTSQ 221
Query: 146 TLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 205
L F+ P A+V++++ G+SRG+GFVSF +D + A++ + G + R +R
Sbjct: 222 YLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLK 281
Query: 206 WASKGANANDEKQSSDSKN 224
A ++ K SS +N
Sbjct: 282 LA-----VDNRKPSSLDQN 295
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 25/203 (12%)
Query: 122 SQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRN 181
+Q +++ +FVG+L ++ + L F + +++D T RSRGF FV+ N
Sbjct: 99 NQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGN 158
Query: 182 QQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITND 241
+DA+ AI G +G R I+ N+ + S + V
Sbjct: 159 VEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYV--------------- 203
Query: 242 DAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS----LGAGTIEDVRVQRDKGFGFVRYST 297
D+P K +Y GNL ++TS L + F L A + + + +G+GFV + T
Sbjct: 204 DSPHK------IYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFET 257
Query: 298 HAEAALAIQMGNARVLFGKPIKC 320
+ +A+ N + G+P++
Sbjct: 258 AEDVEVALSAMNGVEVQGRPLRL 280
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 21/199 (10%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKL----IRKEKSSYGFVDYYDRSSA 96
+S+ R ++VGN+ ++ S L +LF AG + ++ I + FV + A
Sbjct: 103 ESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDA 162
Query: 97 AFAIVTLNGRNLFGQPIKVNWAYA-----RSQREDT------SGHFNIFVGDLSPEVTDA 145
AI +G + G+ IKVN+ R Q T S H I+ G+L ++T
Sbjct: 163 EEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH-KIYAGNLGWDMTSQ 221
Query: 146 TLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 205
L F+ P A+V++++ G+SRG+GFVSF +D + A++ + G + R +R
Sbjct: 222 YLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLK 281
Query: 206 WASKGANANDEKQSSDSKN 224
A ++ K SS +N
Sbjct: 282 LA-----VDNRKPSSLDQN 295
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 25/203 (12%)
Query: 122 SQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRN 181
+Q +++ +FVG+L ++ + L F + +++D T RSRGF FV+ N
Sbjct: 99 NQEAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGN 158
Query: 182 QQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITND 241
+DA+ AI G +G R I+ N+ + S + V
Sbjct: 159 VEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYV--------------- 203
Query: 242 DAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHS----LGAGTIEDVRVQRDKGFGFVRYST 297
D+P K +Y GNL ++TS L + F L A + + + +G+GFV + T
Sbjct: 204 DSPHK------IYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFET 257
Query: 298 HAEAALAIQMGNARVLFGKPIKC 320
+ +A+ N + G+P++
Sbjct: 258 AEDVEVALSAMNGVEVQGRPLRL 280
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VGN V L LF AG +E ++I ++ +GFV A A+
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 104 NGRNLFGQPIKVNWAYARSQREDTSGH--------FNIFVGDLSPEVTDATLYACFSAYP 155
NG + G+ + VN A + R + + I+V +L+ EV ++ L FS +
Sbjct: 171 NGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEHG 230
Query: 156 SCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGK 195
ARV++D++TGRSRGFGFV+ ++ + AI L G+
Sbjct: 231 KIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG+ +V L F + A V++++QT SRGFGFV+ ++A+SA+
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
G R + N AS GS+ + AP
Sbjct: 171 NGYDYNGRSLVVNKASP-----------------------KGSRPERTERAPRTFEPVLR 207
Query: 253 VYVGNLAPEVTSVDLHQHFHSLG----AGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMG 308
+YV NLA EV + L Q F G A + D R +GFGFV S E AI
Sbjct: 208 IYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAAL 267
Query: 309 NARV 312
+ +V
Sbjct: 268 DGQV 271
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 83/198 (41%), Gaps = 41/198 (20%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
++ G+L V A L Y S V++D+ TG+SRGF FV+ +D + I +
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 192 LTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYT 251
L GK R +R N++ D K P Y
Sbjct: 174 LDGKEFMGRTLRVNFS---------------------------------DKPKPKEPLYP 200
Query: 252 ----TVYVGNLAPEVTSVDLHQHFHS----LGAGTIEDVRVQRDKGFGFVRYSTHAEAAL 303
++VGNLA VTS L Q F +GA + D + +G+GFV Y+T +E
Sbjct: 201 ETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDT 260
Query: 304 AIQMGNARVLFGKPIKCS 321
A+ + + L G+ ++ S
Sbjct: 261 ALAIMDNVELEGRTLRVS 278
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+Y GN+ V +LL L G+ E +++ + + FV I L
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 104 NGRNLFGQPIKVNWAYARSQREDT--SGHFNIFVGDLSPEVTDATLYACFSAYPSCSDAR 161
+G+ G+ ++VN++ +E + +FVG+L+ VT +L F + + AR
Sbjct: 175 DGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGAR 234
Query: 162 VMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 207
V++D +TG+SRG+GFVS+ + + +A+ + L R +R + A
Sbjct: 235 VLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLA 280
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 51/74 (68%)
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
+ +F GDL EV D L F+ +PS + ARV+ D++TG+++G+GF+SF N D +A+
Sbjct: 132 YRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALK 191
Query: 191 DLTGKWLGSRQIRC 204
++ GK++G+R I+
Sbjct: 192 EMNGKYVGNRPIKL 205
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 18/198 (9%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLI----RKEKSSYGFVDYYDRSSAAFAIVTL 103
+YVGN+ +T S L ++FA AG + +++ + FV A AI
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 104 NGRNLFGQPIKVNWAYA--------------RSQREDTSGHFNIFVGDLSPEVTDATLYA 149
+G + G+ KVN+ S R I+ G+L + L
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRD 230
Query: 150 CFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASK 209
F P A++++++ GRSRGFGFV+F + ++A+N + G + R +R N A+
Sbjct: 231 AFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAAA 290
Query: 210 GANANDEKQSSDSKNVVE 227
+ + ++KN +E
Sbjct: 291 RTSPSPPVIEENTKNNIE 308
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 39/205 (19%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG+L +T + L F+ + +++D+ T RSRGF FV+ ++ ++A+ AI
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 193 TGKWLGSRQIRCNW--ASKGANANDEKQSSDSKNVVELTNGTSGSQEITND-----DAPE 245
G +G R + N+ KG L G Q++ N D+P
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGGE--------------RLVMG----QKVRNSYRGFVDSPH 212
Query: 246 KNPQYTTVYVGNLAPEVTSVDLHQHFHS----LGAGTIEDVRVQRDKGFGFVRYST--HA 299
K +Y GNL + S DL F LGA I + R +GFGFV + T H
Sbjct: 213 K------IYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHL 266
Query: 300 EAALAIQMGNARVLFGKPIKCSWGS 324
EAAL N + G+P++ + +
Sbjct: 267 EAALNAM--NGVEVQGRPLRLNLAA 289
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VGN+ V + L E+F AG +E ++I + + +GFV + A L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 104 NGRNLFGQPIKVNWAYARSQREDTS-----------------------GHFNIFVGDLSP 140
NG + G+ ++VN R + S G + VG+L+
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 141 EVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 200
V + L + F +A+V++D+++GRSRGFGFV+F + + SAI L G L R
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGR 265
Query: 201 QIRCNWA 207
IR + A
Sbjct: 266 AIRVSPA 272
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 88/199 (44%), Gaps = 24/199 (12%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG+L V A L F V++D+ TGRSRGFGFV+ + + ++A L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
G + R++R N A +S +S+ G D P P+ +
Sbjct: 146 NGYVVDGRELRVN-----AGPPPPPRSENSR---------FGENPRFGGDRPRGPPRGGS 191
Query: 253 ------VYVGNLAPEVTSVDLHQHFHSLG----AGTIEDVRVQRDKGFGFVRYSTHAEAA 302
V+VGNLA V ++ L F G A I D R +GFGFV +S+ E
Sbjct: 192 SDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVD 251
Query: 303 LAIQMGNARVLFGKPIKCS 321
AI+ + L G+ I+ S
Sbjct: 252 SAIRTLDGADLNGRAIRVS 270
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
++VGN+ V + L E+F AG +E ++I + + +GFV + A L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 104 NGRNLFGQPIKVNWAYARSQREDTS-----------------------GHFNIFVGDLSP 140
NG + G+ ++VN R + S G + VG+L+
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 141 EVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 200
V + L + F +A+V++D+++GRSRGFGFV+F + + SAI L G L R
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGR 265
Query: 201 QIRCNWA 207
IR + A
Sbjct: 266 AIRVSPA 272
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 88/199 (44%), Gaps = 24/199 (12%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG+L V A L F V++D+ TGRSRGFGFV+ + + ++A L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
G + R++R N A +S +S+ G D P P+ +
Sbjct: 146 NGYVVDGRELRVN-----AGPPPPPRSENSR---------FGENPRFGGDRPRGPPRGGS 191
Query: 253 ------VYVGNLAPEVTSVDLHQHFHSLG----AGTIEDVRVQRDKGFGFVRYSTHAEAA 302
V+VGNLA V ++ L F G A I D R +GFGFV +S+ E
Sbjct: 192 SDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVD 251
Query: 303 LAIQMGNARVLFGKPIKCS 321
AI+ + L G+ I+ S
Sbjct: 252 SAIRTLDGADLNGRAIRVS 270
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + +L FS Y DAR++ D++TGRSRGFGF++F + ++A SAI L
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 103
Query: 193 TGKWLGSRQIRCNWASK 209
G+ L R++R N+A++
Sbjct: 104 DGQDLHGRRVRVNYANE 120
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + L FS Y DA+++ D+ TGRSRGFGF++F ++A SA+ +
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 193 TGKWLGSRQIRCNWASKGA 211
K L R +R N+A++ A
Sbjct: 102 DNKELDGRTVRVNYATERA 120
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + L FS Y DA+++ D+ TGRSRGFGF++F ++A SA+ +
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 193 TGKWLGSRQIRCNWASKGA 211
K L R +R N+A++ A
Sbjct: 102 DNKELDGRTVRVNYATERA 120
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 29/194 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L FS Y +A +M D+ TGR+RGFGFV F A+ D+
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF-----IDPAVADI 62
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
Q + N + A + D +NV+ T+G+ I P + +
Sbjct: 63 V------VQEKHNIDGRMVEA-KKAVPRDDQNVLSRTSGS-----IHGSPGPGRTRK--- 107
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTHAEAALAIQ 306
++VG LA VT D ++F GTI DV V QR +GFGF+ Y + EA +
Sbjct: 108 IFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSE-EAVDQVL 164
Query: 307 MGNARVLFGKPIKC 320
+ L GK ++
Sbjct: 165 LKTFHELNGKMVEV 178
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 29/194 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L FS Y +A +M D+ TGR+RGFGFV F A+ D+
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF-----IDPAVADI 62
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
Q + N + A + D +NV+ T+G+ I P + +
Sbjct: 63 V------VQEKHNIDGRMVEA-KKAVPRDDQNVLSRTSGS-----IHGSPGPGRTRK--- 107
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTHAEAALAIQ 306
++VG LA VT D ++F GTI DV V QR +GFGF+ Y + EA +
Sbjct: 108 IFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSE-EAVDQVL 164
Query: 307 MGNARVLFGKPIKC 320
+ L GK ++
Sbjct: 165 LKTFHELNGKMVEV 178
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G LS V D +L F+ Y +ARV+ D++TGRSRGFGFV+F +++ A SA++ +
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS-M 96
Query: 193 TGKWLGSRQIRCNWAS 208
G+ L R IR ++A+
Sbjct: 97 DGQDLNGRNIRVSYAN 112
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%)
Query: 129 GHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSA 188
G ++ V +S + +L FS Y DAR++ D++TGRSRGFGF++F + ++A SA
Sbjct: 48 GILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSA 107
Query: 189 INDLTGKWLGSRQIRCNWASK 209
I L G+ L R++R N+A++
Sbjct: 108 IQALDGQDLHGRRVRVNYANE 128
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 41 DSST-CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFA 99
DSST ++YV N+ P VTDS L +LF GAL+ + +Y FV + A A
Sbjct: 21 DSSTPSNNLYVANLSPDVTDSDLMDLFVQYGALD--SVTSYSARNYAFVFFKRIDDAKAA 78
Query: 100 IVTLNGRNLFGQPIKVNWAY-ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCS 158
L G N G +++ +A A++ ++ ++VG +SP VT L A F +
Sbjct: 79 KNALQGFNFRGNSLRIEFARPAKTCKQ-------LWVGGISPAVTKEDLEADFRKFGKVE 131
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 206
D + D+ T V F N DA A+ + GK +G IR ++
Sbjct: 132 DFKFFRDRNT------ACVEFFNLDDAIQAMKIMNGKHIGGENIRVDF 173
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 17/168 (10%)
Query: 41 DSST-CRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYGFVDYYDRSSAAFA 99
DSST ++YV N+ P VTDS L +LF GAL+ + +Y FV + A A
Sbjct: 21 DSSTPSNNLYVANLSPDVTDSDLMDLFVQYGALD--SVTSYSARNYAFVFFKRIDDAKAA 78
Query: 100 IVTLNGRNLFGQPIKVNWAY-ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCS 158
L G N G +++ +A A++ ++ ++VG +SP VT L A F +
Sbjct: 79 KNALQGFNFRGNSLRIEFARPAKTCKQ-------LWVGGISPAVTKEDLEADFRKFGKVE 131
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 206
D + D+ T V F N DA A+ + GK +G IR ++
Sbjct: 132 DFKFFRDRNT------ACVEFFNLDDAIQAMKIMNGKHIGGENIRVDF 173
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 65.5 bits (158), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 50/75 (66%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG LS V + +L FS++ ++ R+++D+ +GR+RGFGFV F N+ A+SA + +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 193 TGKWLGSRQIRCNWA 207
GK L R +R N+A
Sbjct: 98 DGKALLGRPLRINFA 112
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDYYDRSSAAFAIV 101
R+V+ + + T+ + E F+ AG + +LI S G++++YD S AI
Sbjct: 202 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 261
Query: 102 TLNGRNLFGQPIKVNWAYARS---QREDTSG----------HFNIFVGDLSPEVTDATLY 148
L+G+ L GQP+ V + A Q +SG ++VG+L +T+A L
Sbjct: 262 -LSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMTEANLR 320
Query: 149 ACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCNWA 207
F + ++ D +TG +GFGFV F + + A++A L GK + R I+ +
Sbjct: 321 EIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA-QSLNGKLEIAGRTIKVSSV 379
Query: 208 SKGANAND 215
+ + D
Sbjct: 380 TDHVGSQD 387
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 29/196 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F + + T+ +Y FS D R++ D+ + RS+G G++ F + AI L
Sbjct: 204 VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA-L 262
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+G+ L + + K S KN+V+ +N +SG+ + A ++
Sbjct: 263 SGQLLLGQPVMV------------KPSEAEKNLVQ-SNASSGAAVVGPYGAVDRK----- 304
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD------KGFGFVRYSTHAEAALAIQ 306
+YVGNL +T +L + F G IE V++ D KGFGFV+++ H E A A Q
Sbjct: 305 LYVGNLHFNMTEANLREIFEPFG--QIEVVQLPLDMETGHCKGFGFVQFA-HLEHAKAAQ 361
Query: 307 MGNARV-LFGKPIKCS 321
N ++ + G+ IK S
Sbjct: 362 SLNGKLEIAGRTIKVS 377
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDYYDRSSAAFAIV 101
R+V+ + + T+ + E F+ AG + +LI S G++++YD S AI
Sbjct: 215 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 102 TLNGRNLFGQPIKVNWAYARS---QREDTSG-----------HFNIFVGDLSPEVTDATL 147
L+G+ L GQP+ V + A Q T+G ++VG+L +T++ L
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333
Query: 148 YACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCNW 206
F + + ++ D +TG +GFGF+ F + + A++A L GK + R I+ +
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QSLNGKLEIAGRTIKVSS 392
Query: 207 ASKGANAND 215
+ + D
Sbjct: 393 VADHIGSQD 401
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 30/198 (15%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+F + + T+ +Y FS D R++ D+ + RS+G G++ F + AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA- 274
Query: 192 LTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITND-DAPEKNPQY 250
L+G+ L + + K S KN+V+ +N T+G+ + A ++
Sbjct: 275 LSGQLLLGQPVMV------------KPSEAEKNLVQ-SNTTTGAAGVVGPYGAVDRK--- 318
Query: 251 TTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD------KGFGFVRYSTHAEAALA 304
+YVGNL +T L + F G T+E V++ D KGFGF++++ H E A A
Sbjct: 319 --LYVGNLHFNMTESQLREIFEPFG--TVEVVQLPLDLETGHCKGFGFIQFA-HIEHAKA 373
Query: 305 IQMGNARV-LFGKPIKCS 321
Q N ++ + G+ IK S
Sbjct: 374 AQSLNGKLEIAGRTIKVS 391
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDYYDRSSAAFAIV 101
R+V+ + + T+ + E F+ AG + +LI S G++++YD S AI
Sbjct: 215 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 102 TLNGRNLFGQPIKVNWAYARS---QREDTSG-----------HFNIFVGDLSPEVTDATL 147
L+G+ L GQP+ V + A Q T+G ++VG+L +T++ L
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333
Query: 148 YACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCNW 206
F + + ++ D +TG +GFGF+ F + + A++A L GK + R I+ +
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QSLNGKLEIAGRTIKVSS 392
Query: 207 ASKGANAND 215
+ + D
Sbjct: 393 VADHIGSQD 401
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+F + + T+ +Y FS D R++ D+ + RS+G G++ F + AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA- 274
Query: 192 LTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYT 251
L+G+ L + + K S KN+V+ +N T+G+ + Y
Sbjct: 275 LSGQLLLGQPVMV------------KPSEAEKNLVQ-SNTTTGAAGVVG--------PYG 313
Query: 252 TV----YVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD------KGFGFVRYSTHAEA 301
V YVGNL +T L + F G T+E V++ D KGFGF++++ H E
Sbjct: 314 AVDRKLYVGNLHFNMTESQLREIFEPFG--TVEVVQLPLDLETGHCKGFGFIQFA-HIEH 370
Query: 302 ALAIQMGNARV-LFGKPIKCS 321
A A Q N ++ + G+ IK S
Sbjct: 371 AKAAQSLNGKLEIAGRTIKVS 391
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 46 RSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKS----SYGFVDYYDRSSAAFAIV 101
R+V+ + + T+ + E F+ AG + +LI S G++++YD S AI
Sbjct: 215 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA 274
Query: 102 TLNGRNLFGQPIKVNWAYARS---QREDTSG-----------HFNIFVGDLSPEVTDATL 147
L+G+ L GQP+ V + A Q T+G ++VG+L +T++ L
Sbjct: 275 -LSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQL 333
Query: 148 YACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIRCNW 206
F + + ++ D +TG +GFGF+ F + + A++A L GK + R I+ +
Sbjct: 334 REIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA-QSLNGKLEIAGRTIKVSS 392
Query: 207 ASKGANAND 215
+ + D
Sbjct: 393 VADHIGSQD 401
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 36/201 (17%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+F + + T+ +Y FS D R++ D+ + RS+G G++ F + AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIA- 274
Query: 192 LTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYT 251
L+G+ L + + K S KN+V+ +N T+G+ + Y
Sbjct: 275 LSGQLLLGQPVMV------------KPSEAEKNLVQ-SNTTTGAAGVVG--------PYG 313
Query: 252 TV----YVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRD------KGFGFVRYSTHAEA 301
V YVGNL +T L + F G T+E V++ D KGFGF++++ H E
Sbjct: 314 AVDRKLYVGNLHFNMTESQLREIFEPFG--TVEVVQLPLDLETGHCKGFGFIQFA-HIEH 370
Query: 302 ALAIQMGNARV-LFGKPIKCS 321
A A Q N ++ + G+ IK S
Sbjct: 371 AKAAQSLNGKLEIAGRTIKVS 391
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L F + +A +M D+ TGR+RGFGFV F + A+ + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A D +NV +N +S +P P T
Sbjct: 64 EKHVIDGRTVEAKKAVP----------RDDQNVFTRSNSSS-------HGSPAPTPIRTK 106
Query: 253 -VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTHAEAALAI 305
++VG LA VT D +F G TI DV V QR +GFGF+ Y + EA +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSE-EAVEKV 163
Query: 306 QMGNARVLFGKPIKC 320
L GK ++
Sbjct: 164 LHKTFHELNGKMVEV 178
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+++G I + L++ F G + +++ + +GFV + D S A V +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE--RVVM 63
Query: 104 NGRNLFGQPIKVNWAYARSQ-----REDTSGHFN----------IFVGDLSPEVTDATLY 148
+ G+ ++ A R R ++S H + IFVG L+ VT++
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 149 ACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 197
F + + +D VM+D T R RGFGF+++ +++ + + ++L GK +
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L F + +A +M D+ TGR+RGFGFV F + A+ + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A D +NV +N +S +P P T
Sbjct: 64 EKHVIDGRTVEAKKAVP----------RDDQNVFTRSNSSS-------HGSPAPTPIRTK 106
Query: 253 -VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTHAEAALAI 305
++VG LA VT D +F G TI DV V QR +GFGF+ Y + EA +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSE-EAVEKV 163
Query: 306 QMGNARVLFGKPIKC 320
L GK ++
Sbjct: 164 LHKTFHELNGKMVEV 178
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+++G I + L++ F G + +++ + +GFV + D S A V +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE--RVVM 63
Query: 104 NGRNLFGQPIKVNWAYARSQ-----REDTSGHFN----------IFVGDLSPEVTDATLY 148
+ G+ ++ A R R ++S H + IFVG L+ VT++
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 149 ACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 197
F + + +D VM+D T R RGFGF+++ +++ + + ++L GK +
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L F + +A +M D+ TGR+RGFGFV F + A+ + +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + A D +NV +N +S +P P T
Sbjct: 64 EKHVIDGRTVEAKKAVP----------RDDQNVFTRSNSSS-------HGSPAPTPIRTK 106
Query: 253 -VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTHAEAALAI 305
++VG LA VT D +F G TI DV V QR +GFGF+ Y + EA +
Sbjct: 107 KIFVGGLASTVTESDFKNYFDQFG--TITDVVVMYDHNTQRPRGFGFITYDSE-EAVEKV 163
Query: 306 QMGNARVLFGKPIKC 320
L GK ++
Sbjct: 164 LHKTFHELNGKMVEV 178
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+++G I + L++ F G + +++ + +GFV + D S A V +
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE--RVVM 63
Query: 104 NGRNLFGQPIKVNWAYARSQ-----REDTSGHFN----------IFVGDLSPEVTDATLY 148
+ G+ ++ A R R ++S H + IFVG L+ VT++
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 149 ACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 197
F + + +D VM+D T R RGFGF+++ +++ + + ++L GK +
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGKMV 176
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
++VG +S DA L F+ Y DARV+ D++ GRS+GFGFV+F ++A +A+
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 192 LTGKWLGSRQIRCNWA 207
+ + L R +R N+A
Sbjct: 101 MDNQELHGRTVRVNYA 116
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG +S + +L FS Y DAR++ D+++GRS+GFGFV++ ++A SAI L
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 193 TGKWLGSRQIRCNWASK 209
G+ L R++ N+A++
Sbjct: 106 DGQDLYGRRVGVNFANE 122
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 50/77 (64%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG +S + +L FS Y DAR++ D+++GRS+GFGFV++ ++A SAI L
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 193 TGKWLGSRQIRCNWASK 209
G+ L R++ N+A++
Sbjct: 106 DGQDLYGRRVGVNFANE 122
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%)
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
F +FVG LS T+ TL FS Y +A+V+ D+ + +S+G+GFV+F +Q +A+ AI
Sbjct: 32 FKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAIT 91
Query: 191 DLTGKWLGSRQIRCNWA 207
++ K L R + ++A
Sbjct: 92 EMNEKALNGRVVFVDYA 108
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L F+ Y +A +M D+ TGR+RGFGFV F + A+ I D
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + K A D++Q N+ T GS P + +
Sbjct: 68 --HIIDGRTVEA----KKAVPRDDQQ-----NINRQTGSVQGSP------GPGRTKK--- 107
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTH 298
++VG L +T D +F GTI DV V QR +GFGF+ Y +
Sbjct: 108 IFVGGLPSTITESDFKMYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSE 157
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 43 STCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAF 98
S +++G I + L+E FA G + ++R + +GFV + D + A
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAER 62
Query: 99 AIV---TLNGRNLFGQPI-------KVNWAYARSQREDTSGHFN-IFVGDLSPEVTDATL 147
I+ ++GR + + +N Q G IFVG L +T++
Sbjct: 63 VIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDF 122
Query: 148 YACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 197
F + + +D VM+D T R RGFGF+++ +++ + ++L GK +
Sbjct: 123 KMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 28/172 (16%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+G +S + + L F+ Y +A +M D+ TGR+RGFGFV F + A+ I D
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 67
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
+ R + K A D++Q N+ T GS P + +
Sbjct: 68 --HIIDGRTVEA----KKAVPRDDQQ-----NINRQTGSVQGSP------GPGRTKK--- 107
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRV------QRDKGFGFVRYSTH 298
++VG L +T D +F GTI DV V QR +GFGF+ Y +
Sbjct: 108 IFVGGLPSTITESDFKMYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSE 157
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 43 STCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAF 98
S +++G I + L+E FA G + ++R + +GFV + D + A
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAER 62
Query: 99 AIV---TLNGRNLFGQPI-------KVNWAYARSQREDTSGHFN-IFVGDLSPEVTDATL 147
I+ ++GR + + +N Q G IFVG L +T++
Sbjct: 63 VIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDF 122
Query: 148 YACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 197
F + + +D VM+D T R RGFGF+++ +++ + ++L GK +
Sbjct: 123 KMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMV 176
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
+ FVG L+ + L FS Y D++++ D++TGRSRGFGFV+F N++ AI
Sbjct: 5 EYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAI 64
Query: 190 NDLTGKWLGSRQIRCNWA 207
+ G+ L R I N A
Sbjct: 65 EAMNGQDLDGRNITVNQA 82
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 43 STCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAF 98
+T R ++V + + T L+ +F+ G L+ +I + + YGFV Y A
Sbjct: 73 TTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVL 132
Query: 99 AIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCS 158
A+ + + + G+ A A S D S +FVG++ EV+ +L + FS Y
Sbjct: 133 ALKEPS-KKIDGRMTVTQLAAAGSTGGDVSSR-KVFVGNVPFEVSAESLLSEFSKYGEIE 190
Query: 159 DARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 207
+ + +D+ +G++RGF F ++ ++ A++++ + + K + Q+ C +A
Sbjct: 191 EGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAE-SMKTVDGHQVICKFA 238
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 41/192 (21%)
Query: 120 ARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSF 179
RS + + +FV LS E T TL FS+Y +A V++D+ TGRS+G+GFV +
Sbjct: 65 VRSVADRDTTRRKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY 124
Query: 180 RNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEIT 239
R+ A A+ + + K G R A+ G+ D
Sbjct: 125 RHVDGAVLALKEPSKKIDG-RMTVTQLAAAGSTGGDVSSRK------------------- 164
Query: 240 NDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDK------GFGFV 293
V+VGN+ EV++ L F G IE+ + DK GF F
Sbjct: 165 -------------VFVGNVPFEVSAESLLSEFSKYGE--IEEGPLGFDKASGKTRGFAFF 209
Query: 294 RYSTHAEAALAI 305
Y T A ++
Sbjct: 210 VYKTEEGAKNSV 221
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 29/193 (15%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+++G I + L+E F+ G + ++R++ + +GFV + D S V
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPS--VLDRVLE 65
Query: 104 NGRNLFGQPIKVNWAYARSQRE----------------DTSGHF---NIFVGDLSPEVTD 144
+ + G+ + A++R ++ G+ IFVG L P + +
Sbjct: 66 DKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWLGSR 200
F AY +D VM+DQ TGR RGFGF++F ++ + +DL GK + +
Sbjct: 126 EKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVK 185
Query: 201 QIRCNWASKGANA 213
+ A+ GAN+
Sbjct: 186 RALPKDANPGANS 198
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 29/193 (15%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSAAFAIVTL 103
+++G I + L+E F+ G + ++R++ + +GFV + D S V
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPS--VLDRVLE 65
Query: 104 NGRNLFGQPIKVNWAYARSQRE----------------DTSGHF---NIFVGDLSPEVTD 144
+ + G+ + A++R ++ G+ IFVG L P + +
Sbjct: 66 DKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 145 ATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWLGSR 200
F AY +D VM+DQ TGR RGFGF++F ++ + +DL GK + +
Sbjct: 126 EKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVK 185
Query: 201 QIRCNWASKGANA 213
+ A+ GAN+
Sbjct: 186 RALPKDANPGANS 198
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 29/194 (14%)
Query: 121 RSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFR 180
R + + H IFV L + T ATL FS Y D + + D+ +G+S+G+GF+ F+
Sbjct: 117 RKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFK 176
Query: 181 NQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITN 240
+ A++A+ + K +G+R C AS G Q + +GS
Sbjct: 177 RRSGARNALKE-PQKKIGNRMTACQLASIGP-----VQQTPVVAAAPAPLVVAGS----- 225
Query: 241 DDAPEKNPQYT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGF 292
+YT +Y+ N+ PE+ + L F G IE D + KGF
Sbjct: 226 --------EYTQRKIYISNVGPELDAQKLFGFFSRF--GEIEEGPLGLDKVTGKPKGFCL 275
Query: 293 VRYSTHAEAALAIQ 306
Y + A A++
Sbjct: 276 FVYKSAESARRALE 289
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 29/194 (14%)
Query: 121 RSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFR 180
R + + H IFV L + T ATL FS Y D + + D+ +G+S+G+GF+ F+
Sbjct: 117 RKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFK 176
Query: 181 NQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITN 240
+ A++A+ + K +G+R C AS G Q + +GS
Sbjct: 177 RRSGARNALKE-PQKKIGNRMTACQLASIGP-----VQQTPVVAAAPAPLVVAGS----- 225
Query: 241 DDAPEKNPQYT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGF 292
+YT +Y+ N+ PE+ + L F G IE D + KGF
Sbjct: 226 --------EYTQRKIYISNVGPELDAQKLFGFFSRF--GEIEEGPLGLDKVTGKPKGFCL 275
Query: 293 VRYSTHAEAALAIQ 306
Y + A A++
Sbjct: 276 FVYKSAESARRALE 289
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 29/194 (14%)
Query: 121 RSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFR 180
R + + H IFV L + T ATL FS Y D + + D+ +G+S+G+GF+ F+
Sbjct: 117 RKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFK 176
Query: 181 NQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITN 240
+ A++A+ + K +G+R C AS G Q + +GS
Sbjct: 177 RRSGARNALKE-PQKKIGNRMTACQLASIGP-----VQQTPVVAAAPAPLVVAGS----- 225
Query: 241 DDAPEKNPQYT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGF 292
+YT +Y+ N+ PE+ + L F G IE D + KGF
Sbjct: 226 --------EYTQRKIYISNVGPELDAQKLFGFFSRF--GEIEEGPLGLDKVTGKPKGFCL 275
Query: 293 VRYSTHAEAALAIQ 306
Y + A A++
Sbjct: 276 FVYKSAESARRALE 289
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 29/194 (14%)
Query: 121 RSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFR 180
R + + H IFV L + T ATL FS Y D + + D+ +G+S+G+GF+ F+
Sbjct: 117 RKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFK 176
Query: 181 NQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITN 240
+ A++A+ + K +G+R C AS G Q + +GS
Sbjct: 177 RRSGARNALKE-PQKKIGNRMTACQLASIGP-----VQQTPVVAAAPAPLVVAGS----- 225
Query: 241 DDAPEKNPQYT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGF 292
+YT +Y+ N+ PE+ + L F G IE D + KGF
Sbjct: 226 --------EYTQRKIYISNVGPELDAQKLFGFFSRF--GEIEEGPLGLDKVTGKPKGFCL 275
Query: 293 VRYSTHAEAALAIQ 306
Y + A A++
Sbjct: 276 FVYKSAESARRALE 289
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 131 FNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
+ FVG L+ + L FS Y D++++ D++TGRSRGFGFV+F N++ AI
Sbjct: 6 YRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIE 65
Query: 191 DLTGKWLGSRQIRCNWA 207
+ G+ L R I N A
Sbjct: 66 AMNGQDLDGRNITVNQA 82
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + T ATL FS Y D + + D+ +G+S+G+GF+ F+ + A++A+
Sbjct: 126 HRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNAL 185
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
+ K +G+R C AS G Q + +GS +
Sbjct: 186 KE-PQKKIGNRMTACQLASIGP-----VQQTPVVAAAPAPLVVAGS-------------E 226
Query: 250 YT--TVYVGNLAPEVTSVDLHQHFHSLGAGTIE------DVRVQRDKGFGFVRYSTHAEA 301
YT +Y+ N+ PE+ + L F G IE D + KGF Y + A
Sbjct: 227 YTQRKIYISNVGPELDAQKLFGFFSRF--GEIEEGPLGLDKVTGKPKGFCLFVYKSAESA 284
Query: 302 ALAIQ 306
A++
Sbjct: 285 RRALE 289
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIN 190
+F+G LS V D +L F+ Y +ARV+ D++TGRSRGFGFV+F +++ A SA++
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+ V +LS + + L+ F + S S V D+ TG SRGFGFV+F N++DAQ AIN L
Sbjct: 201 VRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKL 260
Query: 193 TGKWLGSRQIRCNWAS 208
G + ++ WA+
Sbjct: 261 NGYGYDNLILKVEWAT 276
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 94/205 (45%), Gaps = 19/205 (9%)
Query: 11 MMQHSLYHHPALLTPPQIEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFAGAG 70
++Q ++ HP +L+ + ++ ++ + R +++ + T L+ LF+ G
Sbjct: 47 ILQDAVVRHPDVLS--AVRAVVDPDI-------SRRKLFIRGLGWDTTTEGLRSLFSTYG 97
Query: 71 ALEGCKLIRKEKSS----YGFVDYYDRSSAAFAI----VTLNGRNLFGQPIKVNWAYARS 122
LE +I + + YGFV + A A+ ++GR Q + + +
Sbjct: 98 ELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNT 157
Query: 123 QREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQ 182
D + I+V ++ P++ L A FS Y + + +D+QTGRS+GF ++
Sbjct: 158 NAADVA-QRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTP 216
Query: 183 QDAQSAINDLTGKWLGSRQIRCNWA 207
+ A +A+++ K + RQ+ C A
Sbjct: 217 EGANAAVSEPV-KNVEGRQLNCKLA 240
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 28 IEPIMSGNLPPGFDSSTCRSVYVGNIHPQVTDSLLQELFA---GAGALEGCKLIRKEKSS 84
+E I ++ P D RS++V N++ + TD +L+E F+ G + K+ + K+
Sbjct: 625 VERISDADIDP--DRIEARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNG 682
Query: 85 ------YGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARS-------QREDTSGHF 131
+GFV++ +A L G L G + + + ++ + E
Sbjct: 683 KNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEKDKSST 742
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
+ V +++ E T+ L FS + R+ + G RGF FV + QQ+AQ+A+
Sbjct: 743 KLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPM--KFGNHRGFAFVEYVTQQEAQNALTA 800
Query: 192 LTGKWLGSRQIRCNWASKG 210
L+ L R + A +G
Sbjct: 801 LSSTHLYGRHLVIERAKEG 819
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
++ V +LS + + L F + + S V DQ+TG SRGFGFV+F +++DAQ AIN
Sbjct: 212 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINK 271
Query: 192 LTGKWLGSRQIRCNWAS 208
L G + +R WA+
Sbjct: 272 LNGYGYDNLILRVEWAT 288
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
++VG L+ EV ++ L+A F + D + DQ T + R FGFV+F ++DA +A++++
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 193 TGKWLGSRQIRCNWA 207
G L R + N+A
Sbjct: 72 DGAELYGRVLTVNYA 86
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
+ FVG L+ L FS + +D++V+ D++TGRSRGFGFV+F ++ + AI
Sbjct: 7 EYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAI 66
Query: 190 NDLTGKWLGSRQIRCNWA 207
++ G+ + R I N A
Sbjct: 67 EEMNGQDIDGRNITVNEA 84
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 11/164 (6%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSSYG----FVDYYDRSSA 96
D ++VG++ T+ ++ LF G + LI+ K+ F+ Y A
Sbjct: 83 DGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEA 142
Query: 97 AFAIVTLNGRNLFGQ---PIKVNWAYARSQREDTSG-HFNIFVGDLSPEVTDATLYACFS 152
AI L+ R+ PI+V YA +RE + +FVG L+ + + + FS
Sbjct: 143 DQAIRALHNRHTLPGGVGPIQVR--YADGERERLGAVEYKLFVGSLNKQASVKEVEEVFS 200
Query: 153 AYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDLTGKW 196
Y D +M D Q +SRG GFV + ++ A +AIN L G +
Sbjct: 201 KYGRIEDVYLMRDDQK-QSRGCGFVKYSHRDMALAAINALNGIY 243
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 119 YARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVS 178
+ RS D S +++ V +++ T L+ F Y D + D++TG SRGF FV
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVR 63
Query: 179 FRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANA 213
++ +A A++ L G+ + R+I +A G NA
Sbjct: 64 YKYADEASKAVDRLDGRMVDGREITVQFAKYGPNA 98
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 119 YARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVS 178
+ RS D S +++ V +++ T L+ F Y D + D++TG SRGF FV
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVR 63
Query: 179 FRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANA 213
++ +A A++ L G+ + R+I +A G NA
Sbjct: 64 YKYADEASKAVDRLDGRMVDGREITVQFAKYGPNA 98
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 119 YARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVS 178
+ RS D S +++ V +++ T L+ F Y D + D++TG SRGF FV
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVR 63
Query: 179 FRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANA 213
++ +A A++ L G+ + R+I +A G NA
Sbjct: 64 YKYADEASKAVDRLDGRMVDGREITVQFAKYGPNA 98
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 119 YARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVS 178
+ RS D S +++ V +++ T L+ F Y D + D++TG SRGF FV
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVR 63
Query: 179 FRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANA 213
++ +A A++ L G+ + R+I +A G NA
Sbjct: 64 YKYADEASKAVDRLDGRMVDGREITVQFAKYGPNA 98
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
+ FVG L+ L FS Y D++++ D++TGRSRGFGFV+F +++ + AI
Sbjct: 7 EYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAI 66
Query: 190 NDLTGKWLGSRQIRCN 205
+ G+ + R I N
Sbjct: 67 EGMNGQDMDGRNITVN 82
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 111 QPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGR 170
QP V+ + Q DT+ +FVG L+ E T+ F + +A V+ D+ TGR
Sbjct: 6 QPHMVSGNNNQDQYNDTT-FTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGR 64
Query: 171 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANAN 214
S+G+GFV+F++ + A A + + + R+ CN AS GAN N
Sbjct: 65 SKGYGFVTFKDPEAAIRACQNPS-PVIDGRRANCNIASLGANKN 107
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 111 QPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGR 170
QP V+ + Q DT+ +FVG L+ E T+ F + +A V+ D+ TGR
Sbjct: 6 QPHMVSGNNNQDQYNDTT-FTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGR 64
Query: 171 SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANAN 214
S+G+GFV+F++ + A A + + + R+ CN AS GAN N
Sbjct: 65 SKGYGFVTFKDPEAAIRACQNPS-PVIDGRRANCNIASLGANKN 107
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG L+ E TL F Y +A ++ D+ TGRS+G+GFV+F++ A+ A +
Sbjct: 20 VFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEEP 79
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
T + R+ CN AS GA + + L G++ I +N Q
Sbjct: 80 T-VIINGRRANCNIASLGARRPRSSPITPPPSPPPLPYTQGGTKNIH-----RRNQQQVQ 133
Query: 253 VYVGNLAPEVTSVDLHQHFHSL 274
Y + P S H H H+L
Sbjct: 134 WYYPVVTPTPPSSIFHHH-HAL 154
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG L+ E TL F Y +A ++ D+ TGRS+G+GFV+F++ A+ A +
Sbjct: 20 VFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEEP 79
Query: 193 TGKWLGSRQIRCNWASKGA 211
T + R+ CN AS GA
Sbjct: 80 T-VIINGRRANCNIASLGA 97
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 126 DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA 185
DT+ + +FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+FR+ + A
Sbjct: 25 DTT-YTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 83
Query: 186 QSAINDLTGKWLGSRQIRCNWASKG 210
+ A D + + R+ CN AS G
Sbjct: 84 RRACADPS-PVIDGRRANCNLASHG 107
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 18/195 (9%)
Query: 112 PIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRS 171
P K W + Q D +GH ++V + ++A + F Y + + ++ D+ TG
Sbjct: 56 PRKRQWGPPQDQ-VDVTGHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVR 114
Query: 172 RGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNG 231
+G V + +A AI L+ ++ G ++ + +D K E
Sbjct: 115 QGSCLVKYSTFDEADMAIKALSNQY----------TFPGESSPVVVRFADRKR--ERFGL 162
Query: 232 TSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFG 291
Q + D PE VYVG + E + ++ + F G IEDV V R++G+G
Sbjct: 163 RDFCQNMERRDPPEV---VGKVYVGCINNEASKQEIEEIFSPYGH--IEDVVVLRNRGYG 217
Query: 292 FVRYSTHAEAALAIQ 306
FV++ A AI+
Sbjct: 218 FVKFYNREMALAAIK 232
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 18/195 (9%)
Query: 112 PIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRS 171
P K W + Q D +GH ++V + ++A + F Y + + ++ D+ TG
Sbjct: 56 PRKRQWGPPQDQ-VDVTGHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVR 114
Query: 172 RGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNG 231
+G V + +A AI L+ ++ G ++ + +D K E
Sbjct: 115 QGSCLVKYSTFDEADMAIKALSNQY----------TFPGESSPVVVRFADRKR--ERFGL 162
Query: 232 TSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFG 291
Q + D PE VYVG + E + ++ + F G IEDV V R++G+G
Sbjct: 163 RDFCQNMERRDPPEV---VGKVYVGCINNEASKQEIEEIFSPYGH--IEDVVVLRNRGYG 217
Query: 292 FVRYSTHAEAALAIQ 306
FV++ A AI+
Sbjct: 218 FVKFYNREMALAAIK 232
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 41 DSSTCRSVYVGNIHPQVTDSLLQELFAGAGALEGCKLIRKEKSS----YGFVDYYDRSSA 96
D ++ +++G + + T + + F G + +++ K+ +GF+ Y D S
Sbjct: 40 DGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVV 99
Query: 97 AFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPS 156
I + N IK +D IFVG + VT+ F+ Y
Sbjct: 100 DKVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTK-KIFVGGIPSNVTEDEFRDFFTRYGE 158
Query: 157 CSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
D ++M D T RSRGFGFV+F D + A++DL
Sbjct: 159 VKDHQIMRDHSTNRSRGFGFVTF----DTEEAVDDL 190
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 126 DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA 185
DT+ + +FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+FR+ + A
Sbjct: 25 DTT-YTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 83
Query: 186 QSAINDLTGKWLGSRQIRCNWASKG 210
+ A D + + R+ CN AS G
Sbjct: 84 RRACADPS-PVIDGRRANCNLASHG 107
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 126 DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA 185
D + +++ V +++ T L+ F Y D + D++TG SRGF FV ++ +A
Sbjct: 11 DIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEA 70
Query: 186 QSAINDLTGKWLGSRQIRCNWASKGANA 213
A++ L G+ + R+I +A G NA
Sbjct: 71 SKAVDRLDGRMVDGREITVQFAKYGPNA 98
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 126 DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA 185
D + +++ V +++ T L+ F Y D + D++TG SRGF FV ++ +A
Sbjct: 11 DIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEA 70
Query: 186 QSAINDLTGKWLGSRQIRCNWASKGANA 213
A++ L G+ + R+I +A G NA
Sbjct: 71 SKAVDRLDGRMVDGREITVQFAKYGPNA 98
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 126 DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA 185
D + +++ V +++ T L+ F Y D + D++TG SRGF FV ++ +A
Sbjct: 11 DIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEA 70
Query: 186 QSAINDLTGKWLGSRQIRCNWASKGANA 213
A++ L G+ + R+I +A G NA
Sbjct: 71 SKAVDRLDGRMVDGREITVQFAKYGPNA 98
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 126 DTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDA 185
D + +++ V +++ T L+ F Y D + D++TG SRGF FV ++ +A
Sbjct: 11 DIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEA 70
Query: 186 QSAINDLTGKWLGSRQIRCNWASKGANA 213
A++ L G+ + R+I +A G NA
Sbjct: 71 SKAVDRLDGRMVDGREITVQFAKYGPNA 98
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 123 QREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQ 182
Q DT+ + +FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+FR
Sbjct: 9 QFGDTT-YTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 67
Query: 183 QDAQSAINDLTGKWLGSRQIRCNWASKG---ANANDEKQSSDSKNV 225
A A D + R+ CN AS G + + K +N+
Sbjct: 68 DAAMRACVD-AAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNI 112
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 18/192 (9%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FVG +S E T+ TL F+ Y + + +D+ T RGFGFV+F + A +A+ D
Sbjct: 12 LFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD- 70
Query: 193 TGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQYTT 252
T LG R++ K S+ + + G + + ++ +
Sbjct: 71 THAILG-RKVEV-----------RKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKK 118
Query: 253 VYVGNLAPEVTSVDLHQHFHSLGAGT----IEDVRVQRDKGFGFVRYSTHAEAALAIQMG 308
++VG L ++ + ++F G T ++D R +GFGF+ + + ++ ++ M
Sbjct: 119 IFVGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSE-DSVQSVMMR 177
Query: 309 NARVLFGKPIKC 320
+ L G+ ++
Sbjct: 178 SFHDLNGRQVEV 189
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 123 QREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQ 182
Q DT+ + +FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+FR
Sbjct: 9 QFGDTT-YTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 67
Query: 183 QDAQSAINDLTGKWLGSRQIRCNWASKG---ANANDEKQSSDSKNV 225
A A D + R+ CN AS G + + K +N+
Sbjct: 68 DAAMRACVD-AAPIIDGRRANCNLASLGVQRSKPSTPKHGGGGRNI 112
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 18/195 (9%)
Query: 112 PIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRS 171
P K W + Q D +GH ++V + ++A + F Y + + ++ D+ TG
Sbjct: 56 PRKRQWGPPQDQV-DVTGHVKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVR 114
Query: 172 RGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNG 231
+G V + +A AI L+ ++ G ++ + +D K E
Sbjct: 115 QGSCLVKYSTFDEADMAIKALSNQY----------TFPGESSPVVVRFADRKR--ERFGL 162
Query: 232 TSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGTIEDVRVQRDKGFG 291
Q + D PE VYVG + E + ++ + F G IEDV V R++G+G
Sbjct: 163 RDFCQNMERRDPPEV---VGKVYVGCINNEASKQEIEEIFSPYGH--IEDVVVLRNRGYG 217
Query: 292 FVRYSTHAEAALAIQ 306
FV++ A AI+
Sbjct: 218 FVKFYNREMALAAIK 232
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAIND 191
N+FV LS T TL F + ARV+ D+ +G S+GFGFV + +DA I
Sbjct: 52 NLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEG 111
Query: 192 LTGKWL 197
+ GK+L
Sbjct: 112 MDGKFL 117
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 44/283 (15%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIR-KEKSSYGFVDYYDRSSAAFAIVTLNGR 106
VY+G I + ++ L+ G + ++++ KE Y FV + + A+ A+ LN
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVTFKTKELASKALKELNNS 162
Query: 107 NLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAY-PSCSDARVMWD 165
G+ IK + + + + +F+G + E T + + P ++ D
Sbjct: 163 EFKGRKIKCSPSQVKHR---------LFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKD 213
Query: 166 -QQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKN 224
Q + R+RGF F+ + N A+ SRQ N K N + +D +N
Sbjct: 214 PQSSSRNRGFAFIEYHNHACAEY-----------SRQKMSNSNFKLDNNDAIVSWADPRN 262
Query: 225 VVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGT---IED 281
++ Q VYV NL +T L + F G T +
Sbjct: 263 SESSSSS-----------------QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPP 305
Query: 282 VRVQRDKG-FGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
+ ++K +GFV ++ + A A++ + G+ ++CS
Sbjct: 306 AKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLA 348
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 44/283 (15%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIR-KEKSSYGFVDYYDRSSAAFAIVTLNGR 106
VY+G I + ++ L+ G + ++++ KE Y FV + + A+ A+ LN
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVTFKTKELASKALKELNNS 162
Query: 107 NLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAY-PSCSDARVMWD 165
G+ IK + + + + +F+G + E T + + P ++ D
Sbjct: 163 EFKGRKIKCSPSQVKHR---------LFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKD 213
Query: 166 -QQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKN 224
Q + R+RGF F+ + N A+ SRQ N K N + +D +N
Sbjct: 214 PQSSSRNRGFAFIEYHNHACAEY-----------SRQKMSNSNFKLDNNDAIVSWADPRN 262
Query: 225 VVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGT---IED 281
++ Q VYV NL +T L + F G T +
Sbjct: 263 SESSSSS-----------------QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPP 305
Query: 282 VRVQRDKG-FGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
+ ++K +GFV ++ + A A++ + G+ ++CS
Sbjct: 306 AKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLA 348
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 44/283 (15%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIR-KEKSSYGFVDYYDRSSAAFAIVTLNGR 106
VY+G I + ++ L+ G + ++++ KE Y FV + + A+ A+ LN
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVTFKTKELASKALKELNNS 162
Query: 107 NLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAY-PSCSDARVMWD 165
G+ IK + + + + +F+G + E T + + P ++ D
Sbjct: 163 EFKGRKIKCSPSQVKHR---------LFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKD 213
Query: 166 -QQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKN 224
Q + R+RGF F+ + N A+ SRQ N K N + +D +N
Sbjct: 214 PQSSSRNRGFAFIEYHNHACAEY-----------SRQKMSNSNFKLDNNDAIVSWADPRN 262
Query: 225 VVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGT---IED 281
++ Q VYV NL +T L + F G T +
Sbjct: 263 SESSSSS-----------------QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPP 305
Query: 282 VRVQRDKG-FGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
+ ++K +GFV ++ + A A++ + G+ ++CS
Sbjct: 306 AKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLA 348
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 112/283 (39%), Gaps = 44/283 (15%)
Query: 48 VYVGNIHPQVTDSLLQELFAGAGALEGCKLIR-KEKSSYGFVDYYDRSSAAFAIVTLNGR 106
VY+G I + ++ L+ G + ++++ KE Y FV + + A+ A+ LN
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVTFKTKELASKALKELNNS 162
Query: 107 NLFGQPIKVNWAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAY-PSCSDARVMWD 165
G+ IK + + + + +F+G + E T + + P ++ D
Sbjct: 163 EFKGRKIKCSPSQVKHR---------LFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKD 213
Query: 166 -QQTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKN 224
Q + R+RGF F+ + N A+ SRQ N K N + +D +N
Sbjct: 214 PQSSSRNRGFAFIEYHNHACAEY-----------SRQKMSNSNFKLDNNDAIVSWADPRN 262
Query: 225 VVELTNGTSGSQEITNDDAPEKNPQYTTVYVGNLAPEVTSVDLHQHFHSLGAGT---IED 281
++ Q VYV NL +T L + F G T +
Sbjct: 263 SESSSSS-----------------QVKAVYVKNLPENITQNRLKELFEHHGKITKVALPP 305
Query: 282 VRVQRDKG-FGFVRYSTHAEAALAIQMGNARVLFGKPIKCSWG 323
+ ++K +GFV ++ + A A++ + G+ ++CS
Sbjct: 306 AKAGQEKSRYGFVHFADRSSAMKALKNTEKYEINGQTLECSLA 348
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
Query: 132 NIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQS---- 187
N+F+G +S TL FS Y DA+++ D++TGR RGFGFV+F ++A +
Sbjct: 35 NLFLGGISYN----TLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQT 90
Query: 188 ---AINDLTGKWLGSRQIRCNWASK 209
AI + + L R++R N+A++
Sbjct: 91 MSLAIKSMKNQDLYGRKVRVNYATE 115
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 29/195 (14%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + T TL FS Y D + + D+ +G+S+G+ F+ F+++ + A+
Sbjct: 164 HRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRAL 223
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
K +G+R C AS G + +
Sbjct: 224 KQPQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQ---------------------- 260
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGA---GTIE-DVRVQRDKGFGFVRYSTHAEAALAI 305
++V N++ ++ L + F G G + D + KGF Y T A A+
Sbjct: 261 -RKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKAL 319
Query: 306 QMGNARVLFGKPIKC 320
+ N +V G + C
Sbjct: 320 EEPN-KVFEGHTLYC 333
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 29/195 (14%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + T TL FS Y D + + D+ +G+S+G+ F+ F+++ + A+
Sbjct: 164 HRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRAL 223
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
K +G+R C AS G + +
Sbjct: 224 KQPQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQ---------------------- 260
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGA---GTIE-DVRVQRDKGFGFVRYSTHAEAALAI 305
++V N++ ++ L + F G G + D + KGF Y T A A+
Sbjct: 261 -RKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKAL 319
Query: 306 QMGNARVLFGKPIKC 320
+ N +V G + C
Sbjct: 320 EEPN-KVFEGHTLYC 333
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 75/195 (38%), Gaps = 29/195 (14%)
Query: 130 HFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAI 189
H IFV L + T TL FS Y D + + D+ +G+S+G+ F+ F+++ + A+
Sbjct: 164 HRKIFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKHRTGCRRAL 223
Query: 190 NDLTGKWLGSRQIRCNWASKGANANDEKQSSDSKNVVELTNGTSGSQEITNDDAPEKNPQ 249
K +G+R C AS G + +
Sbjct: 224 KQPQ-KVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQ---------------------- 260
Query: 250 YTTVYVGNLAPEVTSVDLHQHFHSLGA---GTIE-DVRVQRDKGFGFVRYSTHAEAALAI 305
++V N++ ++ L + F G G + D + KGF Y T A A+
Sbjct: 261 -RKIFVSNVSSDIDPQKLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKAL 319
Query: 306 QMGNARVLFGKPIKC 320
+ N +V G + C
Sbjct: 320 EEPN-KVFEGHTLYC 333
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 73 EGCKLIRKEKSSYGFVDYYDRSSAAFAIVTLNGRNLFGQPIKVNWAYARSQREDTSGHFN 132
EGC + V Y SA ++ TL+ + + G + WA + +
Sbjct: 233 EGCTF------NASAVLYTSVKSARASVATLHKKEIGGGTV---WARQLGGEGAKTQKWK 283
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+ V +L + + + FS+ + + + TG S+GF FV F +QDA++AI L
Sbjct: 284 LIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKL 343
Query: 193 TGKWLGSRQIRCNWA 207
G GSR I +WA
Sbjct: 344 NGSKFGSRLIAVDWA 358
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 117 WAYARSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGF 176
+ + RSQ DT+ +FVG L+ E + F + +A ++ D+ TG+S+G+GF
Sbjct: 3 YPHYRSQFGDTT-FTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGF 61
Query: 177 VSFRNQQDAQSAINDLTGKWLGSRQIRCNWAS 208
V+FR+ + A+ A D + R+ CN AS
Sbjct: 62 VTFRDPESARRACAD-PNPVIDGRRANCNIAS 92
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+F+ LS + L F + + +V+ + +TG S+G+GFV F ++ A +A +L
Sbjct: 35 LFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKEL 94
Query: 193 TGKWLGSRQIRCNWASKG 210
G+ + R+IR +A KG
Sbjct: 95 HGQIVDGRRIRVGYAHKG 112
>Medtr4g081510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:31623161-31620622 | 20130731
Length = 185
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 133 IFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQQTGRSRGFGFVSFRNQQDAQSAINDL 192
+FV L+ T TL F + RV+ D+ +G S+GFG+V + +DA I +
Sbjct: 46 VFVTGLNKRTTSETLREAFKKFGEVKQVRVVADRVSGYSKGFGYVRYATSEDAAKGIQGM 105
Query: 193 TGKWLGSRQIRCNWASKGANA-------------NDEKQSSDSKNVVELTNGTSG 234
GK+L + +A NA DEK+++ KN E+ T+G
Sbjct: 106 DGKFLEGWIVFAEYARPRINAIASQTHTEPSNSKPDEKRTTPEKN-GEMKKETAG 159