Miyakogusa Predicted Gene

Lj0g3v0279619.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0279619.1 Non Characterized Hit- tr|B9RET3|B9RET3_RICCO
5'->3' exoribonuclease, putative OS=Ricinus communis G,46.51,2e-16,
,CUFF.18604.1
         (126 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g114570.2 | 5'-3' exoribonuclease | HC | chr7:47305880-473...   139   8e-34
Medtr7g114570.1 | 5'-3' exoribonuclease | HC | chr7:47305879-473...   139   8e-34

>Medtr7g114570.2 | 5'-3' exoribonuclease | HC |
           chr7:47305880-47315956 | 20130731
          Length = 945

 Score =  139 bits (349), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 96/141 (68%), Gaps = 16/141 (11%)

Query: 1   MARPRYPFTSNGGQNDRHNFRTQFRSQHQEQSYNVKAGFSALTMEEGVRPRSSRLP---- 56
           M RPR+P  SNG QNDR N R Q RSQH EQ +N+K GF ALT++EGVRPRSS +P    
Sbjct: 804 MTRPRFPIASNGWQNDRQNIRIQDRSQHHEQFHNMKTGFQALTIDEGVRPRSSAVPSPKT 863

Query: 57  ---------NSG-PINLEPRFVQNMGRPVPPPKWITKAPPANEMYSRHQEAASGAVPYDK 106
                    NSG   NL+P+FVQN+G P+PPP WI+KAP  N MY+RHQEAA G   YDK
Sbjct: 864 PAMMLMRPQNSGHTTNLQPQFVQNIGPPIPPPNWISKAPDTNGMYARHQEAAVGGA-YDK 922

Query: 107 QT-KVYQVKKQEPQDTPDCGN 126
              KVYQ+K + PQD P+ GN
Sbjct: 923 PIKKVYQIKTRNPQDMPEQGN 943


>Medtr7g114570.1 | 5'-3' exoribonuclease | HC |
           chr7:47305879-47315956 | 20130731
          Length = 956

 Score =  139 bits (349), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 96/141 (68%), Gaps = 16/141 (11%)

Query: 1   MARPRYPFTSNGGQNDRHNFRTQFRSQHQEQSYNVKAGFSALTMEEGVRPRSSRLP---- 56
           M RPR+P  SNG QNDR N R Q RSQH EQ +N+K GF ALT++EGVRPRSS +P    
Sbjct: 815 MTRPRFPIASNGWQNDRQNIRIQDRSQHHEQFHNMKTGFQALTIDEGVRPRSSAVPSPKT 874

Query: 57  ---------NSG-PINLEPRFVQNMGRPVPPPKWITKAPPANEMYSRHQEAASGAVPYDK 106
                    NSG   NL+P+FVQN+G P+PPP WI+KAP  N MY+RHQEAA G   YDK
Sbjct: 875 PAMMLMRPQNSGHTTNLQPQFVQNIGPPIPPPNWISKAPDTNGMYARHQEAAVGGA-YDK 933

Query: 107 QT-KVYQVKKQEPQDTPDCGN 126
              KVYQ+K + PQD P+ GN
Sbjct: 934 PIKKVYQIKTRNPQDMPEQGN 954