Miyakogusa Predicted Gene

Lj0g3v0277549.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277549.3 CUFF.18431.3
         (139 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g078350.1 | helix loop helix DNA-binding domain protein | ...   192   6e-50
Medtr2g090480.1 | helix loop helix DNA-binding domain protein | ...   178   1e-45
Medtr2g090425.1 | helix loop helix DNA-binding domain protein | ...   170   4e-43
Medtr2g090440.1 | helix loop helix DNA-binding domain protein | ...   168   1e-42
Medtr2g090500.1 | hypothetical protein | LC | chr2:38618879-3861...   166   5e-42
Medtr2g013920.1 | helix loop helix DNA-binding domain protein | ...    71   3e-13

>Medtr4g078350.1 | helix loop helix DNA-binding domain protein | HC
           | chr4:30195137-30195963 | 20130731
          Length = 208

 Score =  192 bits (489), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 111/144 (77%), Gaps = 11/144 (7%)

Query: 1   MKMAQEKKESL-GGRNKRSRGSCSSSIAATVVSKSPQLEVHETGSSLEVVLTCGLDNQFI 59
           ++MA EKKE L  G+NKRSR  C        + KSP  E+HE GSSL+++LTCGLDNQFI
Sbjct: 71  VQMAMEKKERLLAGKNKRSREYCLD------LPKSPCFEIHEIGSSLQIILTCGLDNQFI 124

Query: 60  FYEIIRILQEENIDIRSANSSMAGD-SMLHVVHAEIPQSYLHFGATKVSERLKRFVNGSS 118
           FYEIIR+L EEN+DIRS NSS  GD S+LHVVHAEIP S + FGATKVSERLK FV GSS
Sbjct: 125 FYEIIRVLHEENVDIRSVNSSKVGDNSLLHVVHAEIPPSCVQFGATKVSERLKSFVYGSS 184

Query: 119 SDMEIHPELWDFEIGTD---MWGF 139
           SD+EI PELWDFEIG D   MWGF
Sbjct: 185 SDVEIQPELWDFEIGPDDHNMWGF 208


>Medtr2g090480.1 | helix loop helix DNA-binding domain protein | LC
           | chr2:38605874-38608239 | 20130731
          Length = 219

 Score =  178 bits (452), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 108/137 (78%), Gaps = 1/137 (0%)

Query: 1   MKMAQEKKESLGGRNKRSRGSCSSSIAATVVSKSPQLEVHETGSSLEVVLTCGLDNQFIF 60
           +K+A+EKKESL G NKRSRG CSSS  A  + K P++E+HE G +L++++TCG+D  FIF
Sbjct: 70  IKLAKEKKESLMG-NKRSRGDCSSSSGAKGIIKLPKIEIHEMGPTLQIIVTCGVDEHFIF 128

Query: 61  YEIIRILQEENIDIRSANSSMAGDSMLHVVHAEIPQSYLHFGATKVSERLKRFVNGSSSD 120
            EI+RIL EEN+++ S+N+S+ G S+LH VHA+IPQS L FG TK+SERLK FVNGS SD
Sbjct: 129 CEIMRILHEENVEVISSNTSLTGHSLLHTVHAQIPQSLLQFGETKISERLKAFVNGSVSD 188

Query: 121 MEIHPELWDFEIGTDMW 137
           +E  P LWD EIG++ W
Sbjct: 189 VETEPLLWDLEIGSESW 205


>Medtr2g090425.1 | helix loop helix DNA-binding domain protein | LC
           | chr2:38561453-38566915 | 20130731
          Length = 327

 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/133 (60%), Positives = 104/133 (78%)

Query: 1   MKMAQEKKESLGGRNKRSRGSCSSSIAATVVSKSPQLEVHETGSSLEVVLTCGLDNQFIF 60
           +K+A+EKKESL G  KRSRG  SSS  A    + P++E+HE G +L+V++TCG+D  FIF
Sbjct: 70  IKLAKEKKESLMGNKKRSRGGWSSSYGAKGSIELPKIEIHEIGPTLQVIVTCGVDEHFIF 129

Query: 61  YEIIRILQEENIDIRSANSSMAGDSMLHVVHAEIPQSYLHFGATKVSERLKRFVNGSSSD 120
            EI+RIL EEN+D+ S+NSS+AGDS+LH V A+IPQS L FG TK+S+RLK FV+GS SD
Sbjct: 130 CEIMRILHEENVDVISSNSSLAGDSLLHTVLAQIPQSLLQFGETKISKRLKAFVDGSMSD 189

Query: 121 MEIHPELWDFEIG 133
           +E  P+LWD EIG
Sbjct: 190 VETDPQLWDLEIG 202


>Medtr2g090440.1 | helix loop helix DNA-binding domain protein | LC
           | chr2:38580669-38583058 | 20130731
          Length = 217

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 79/137 (57%), Positives = 104/137 (75%), Gaps = 3/137 (2%)

Query: 1   MKMAQEKKESLGGRNKRSRGSCSSSIAATVVSKSPQLEVHETGSSLEVVLTCGLDNQFIF 60
           +K A+EKKESL G  KRSRG      A   + K P++E+HE GS+L+V++TCG+D  FIF
Sbjct: 70  LKGAKEKKESLMGNKKRSRGGYG---AKGSIIKLPKIEIHEMGSTLQVIVTCGVDEHFIF 126

Query: 61  YEIIRILQEENIDIRSANSSMAGDSMLHVVHAEIPQSYLHFGATKVSERLKRFVNGSSSD 120
            EI+RIL EEN+++ S+NSS+ GDS+LH VHA+IPQ+ L FGA K+S+RLK FVNGS SD
Sbjct: 127 CEIMRILHEENVEVISSNSSLTGDSLLHTVHAQIPQTLLQFGAMKISQRLKAFVNGSMSD 186

Query: 121 MEIHPELWDFEIGTDMW 137
           +E  P LWD EIG++ W
Sbjct: 187 VETGPLLWDLEIGSESW 203


>Medtr2g090500.1 | hypothetical protein | LC |
           chr2:38618879-38616410 | 20130731
          Length = 230

 Score =  166 bits (420), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 77/135 (57%), Positives = 103/135 (76%), Gaps = 3/135 (2%)

Query: 3   MAQEKKESLGGRNKRSRGSCSSSIAATVVSKSPQLEVHETGSSLEVVLTCGLDNQFIFYE 62
           +A+EKKESL G  KRSRG      A   + K P++E+HE G +L+V++TCG+D  FIF E
Sbjct: 85  LAKEKKESLMGNKKRSRGGYG---AKGSIIKLPKIEIHEMGPTLQVIVTCGVDKHFIFCE 141

Query: 63  IIRILQEENIDIRSANSSMAGDSMLHVVHAEIPQSYLHFGATKVSERLKRFVNGSSSDME 122
           I+RIL EEN+++ S+NSS+ GDS+LH VHA+IPQ+ L FGATK+SERLK FVNGS SD+E
Sbjct: 142 IMRILHEENVEVISSNSSLTGDSLLHTVHAQIPQTLLQFGATKISERLKEFVNGSMSDVE 201

Query: 123 IHPELWDFEIGTDMW 137
              ++WD EIG++ W
Sbjct: 202 TESQVWDLEIGSESW 216


>Medtr2g013920.1 | helix loop helix DNA-binding domain protein | HC
           | chr2:3826720-3828487 | 20130731
          Length = 174

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 6/84 (7%)

Query: 33  KSPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEENIDIRSANSSMAGDSMLHVVHA 92
           KSP++++ + G  LEVVL  GL++QF+F E  R+L EE +DI +A+  +  DS+ H +H 
Sbjct: 92  KSPKIKIQQIGLVLEVVLITGLESQFLFSETFRVLHEEGVDIVNASYKVNEDSVFHSIHC 151

Query: 93  EIPQSYLHFG--ATKVSERLKRFV 114
           ++ +    FG  A ++SERLK+F+
Sbjct: 152 QVGE----FGNEAARISERLKKFM 171