Miyakogusa Predicted Gene

Lj0g3v0271879.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0271879.2 Non Characterized Hit- tr|K3Z2A8|K3Z2A8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si020676,60.26,3e-19,Pcc1,EKC/KEOPS complex, subunit
Pcc1,CUFF.17975.2
         (97 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g007870.3 | transcription factor Pcc1 | HC | chr1:604727-6...   154   2e-38
Medtr1g007870.1 | transcription factor Pcc1 | HC | chr1:604727-6...   154   2e-38
Medtr1g007870.2 | transcription factor Pcc1 | HC | chr1:604727-6...   154   2e-38
Medtr3g091850.1 | transcription factor Pcc1 | HC | chr3:41910531...   153   3e-38
Medtr3g091850.3 | transcription factor Pcc1 | HC | chr3:41910384...   153   3e-38
Medtr3g091850.2 | transcription factor Pcc1 | HC | chr3:41910515...   153   3e-38

>Medtr1g007870.3 | transcription factor Pcc1 | HC |
          chr1:604727-606101 | 20130731
          Length = 93

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 82/91 (90%)

Query: 7  ADAQSQRQFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVE 66
          A +QSQ  FT DLEVDFG +ENASIVYAALAVDKEL P+KV ++M VS+GKLSVHFEA+E
Sbjct: 3  AQSQSQWDFTSDLEVDFGSQENASIVYAALAVDKELQPNKVKRIMAVSDGKLSVHFEAIE 62

Query: 67 ARFLRASFSAFLDVLTLATNTIEEFGQGMEL 97
          ARFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 63 ARFLRASFSAFVDVLTLATKTIEEFGQGMEL 93


>Medtr1g007870.1 | transcription factor Pcc1 | HC |
          chr1:604727-606101 | 20130731
          Length = 93

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 82/91 (90%)

Query: 7  ADAQSQRQFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVE 66
          A +QSQ  FT DLEVDFG +ENASIVYAALAVDKEL P+KV ++M VS+GKLSVHFEA+E
Sbjct: 3  AQSQSQWDFTSDLEVDFGSQENASIVYAALAVDKELQPNKVKRIMAVSDGKLSVHFEAIE 62

Query: 67 ARFLRASFSAFLDVLTLATNTIEEFGQGMEL 97
          ARFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 63 ARFLRASFSAFVDVLTLATKTIEEFGQGMEL 93


>Medtr1g007870.2 | transcription factor Pcc1 | HC |
          chr1:604727-606101 | 20130731
          Length = 93

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/91 (81%), Positives = 82/91 (90%)

Query: 7  ADAQSQRQFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVE 66
          A +QSQ  FT DLEVDFG +ENASIVYAALAVDKEL P+KV ++M VS+GKLSVHFEA+E
Sbjct: 3  AQSQSQWDFTSDLEVDFGSQENASIVYAALAVDKELQPNKVKRIMAVSDGKLSVHFEAIE 62

Query: 67 ARFLRASFSAFLDVLTLATNTIEEFGQGMEL 97
          ARFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 63 ARFLRASFSAFVDVLTLATKTIEEFGQGMEL 93


>Medtr3g091850.1 | transcription factor Pcc1 | HC |
          chr3:41910531-41907589 | 20130731
          Length = 95

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/90 (83%), Positives = 78/90 (86%)

Query: 8  DAQSQRQFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEA 67
          DAQSQ  F+CDL VDFG EENASIVYA L VDKEL PDKV +L  VSNGKLSVHFEA EA
Sbjct: 6  DAQSQWDFSCDLVVDFGSEENASIVYATLMVDKELQPDKVKRLTTVSNGKLSVHFEATEA 65

Query: 68 RFLRASFSAFLDVLTLATNTIEEFGQGMEL 97
          RFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 66 RFLRASFSAFVDVLTLATKTIEEFGQGMEL 95


>Medtr3g091850.3 | transcription factor Pcc1 | HC |
          chr3:41910384-41907589 | 20130731
          Length = 95

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/90 (83%), Positives = 78/90 (86%)

Query: 8  DAQSQRQFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEA 67
          DAQSQ  F+CDL VDFG EENASIVYA L VDKEL PDKV +L  VSNGKLSVHFEA EA
Sbjct: 6  DAQSQWDFSCDLVVDFGSEENASIVYATLMVDKELQPDKVKRLTTVSNGKLSVHFEATEA 65

Query: 68 RFLRASFSAFLDVLTLATNTIEEFGQGMEL 97
          RFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 66 RFLRASFSAFVDVLTLATKTIEEFGQGMEL 95


>Medtr3g091850.2 | transcription factor Pcc1 | HC |
          chr3:41910515-41907589 | 20130731
          Length = 95

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/90 (83%), Positives = 78/90 (86%)

Query: 8  DAQSQRQFTCDLEVDFGCEENASIVYAALAVDKELHPDKVTQLMKVSNGKLSVHFEAVEA 67
          DAQSQ  F+CDL VDFG EENASIVYA L VDKEL PDKV +L  VSNGKLSVHFEA EA
Sbjct: 6  DAQSQWDFSCDLVVDFGSEENASIVYATLMVDKELQPDKVKRLTTVSNGKLSVHFEATEA 65

Query: 68 RFLRASFSAFLDVLTLATNTIEEFGQGMEL 97
          RFLRASFSAF+DVLTLAT TIEEFGQGMEL
Sbjct: 66 RFLRASFSAFVDVLTLATKTIEEFGQGMEL 95