Miyakogusa Predicted Gene

Lj0g3v0269239.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0269239.1 Non Characterized Hit- tr|K4CH48|K4CH48_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,55.91,2e-19,UBA-like,UBA-like;
UBA,Ubiquitin-associated/translation elongation factor EF1B,
N-terminal; SUBFAMIL,CUFF.17782.1
         (125 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g081180.5 | ubiquitin carboxyl-terminal hydrolase | HC | c...   115   8e-27
Medtr2g081180.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...   115   1e-26
Medtr2g081180.3 | ubiquitin carboxyl-terminal hydrolase | HC | c...   115   1e-26
Medtr2g081180.2 | ubiquitin carboxyl-terminal hydrolase | HC | c...   115   1e-26
Medtr2g081180.4 | ubiquitin carboxyl-terminal hydrolase | HC | c...   115   1e-26
Medtr8g464880.1 | ubiquitin carboxyl-terminal hydrolase | HC | c...   104   2e-23

>Medtr2g081180.5 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr2:34052970-34046812 | 20130731
          Length = 529

 Score =  115 bits (288), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 4/82 (4%)

Query: 1   MNWLLSHMDDPDIDTPIFESHGSETLTNVDQSKVDSLISFGFQEEISRKALKASGGDIDK 60
           M WLL+HM+DPDID PI    GSE+   VDQSKVD L+SFGFQ++++RKAL ASGGDI+K
Sbjct: 379 MTWLLAHMEDPDIDAPILRGRGSES---VDQSKVDMLLSFGFQDDVARKALIASGGDIEK 435

Query: 61  ATYWILSNPDA-VSSMDATSSN 81
           AT WI SNPDA VS+MDAT+SN
Sbjct: 436 ATDWIFSNPDASVSNMDATASN 457


>Medtr2g081180.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr2:34056025-34046800 | 20130731
          Length = 802

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 4/82 (4%)

Query: 1   MNWLLSHMDDPDIDTPIFESHGSETLTNVDQSKVDSLISFGFQEEISRKALKASGGDIDK 60
           M WLL+HM+DPDID PI    GSE+   VDQSKVD L+SFGFQ++++RKAL ASGGDI+K
Sbjct: 652 MTWLLAHMEDPDIDAPILRGRGSES---VDQSKVDMLLSFGFQDDVARKALIASGGDIEK 708

Query: 61  ATYWILSNPDA-VSSMDATSSN 81
           AT WI SNPDA VS+MDAT+SN
Sbjct: 709 ATDWIFSNPDASVSNMDATASN 730


>Medtr2g081180.3 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr2:34056009-34046809 | 20130731
          Length = 788

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 4/82 (4%)

Query: 1   MNWLLSHMDDPDIDTPIFESHGSETLTNVDQSKVDSLISFGFQEEISRKALKASGGDIDK 60
           M WLL+HM+DPDID PI    GSE+   VDQSKVD L+SFGFQ++++RKAL ASGGDI+K
Sbjct: 638 MTWLLAHMEDPDIDAPILRGRGSES---VDQSKVDMLLSFGFQDDVARKALIASGGDIEK 694

Query: 61  ATYWILSNPDA-VSSMDATSSN 81
           AT WI SNPDA VS+MDAT+SN
Sbjct: 695 ATDWIFSNPDASVSNMDATASN 716


>Medtr2g081180.2 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr2:34055950-34047098 | 20130731
          Length = 784

 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 4/82 (4%)

Query: 1   MNWLLSHMDDPDIDTPIFESHGSETLTNVDQSKVDSLISFGFQEEISRKALKASGGDIDK 60
           M WLL+HM+DPDID PI    GSE+   VDQSKVD L+SFGFQ++++RKAL ASGGDI+K
Sbjct: 634 MTWLLAHMEDPDIDAPILRGRGSES---VDQSKVDMLLSFGFQDDVARKALIASGGDIEK 690

Query: 61  ATYWILSNPDA-VSSMDATSSN 81
           AT WI SNPDA VS+MDAT+SN
Sbjct: 691 ATDWIFSNPDASVSNMDATASN 712


>Medtr2g081180.4 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr2:34053217-34046812 | 20130731
          Length = 568

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 68/82 (82%), Gaps = 4/82 (4%)

Query: 1   MNWLLSHMDDPDIDTPIFESHGSETLTNVDQSKVDSLISFGFQEEISRKALKASGGDIDK 60
           M WLL+HM+DPDID PI    GSE+   VDQSKVD L+SFGFQ++++RKAL ASGGDI+K
Sbjct: 418 MTWLLAHMEDPDIDAPILRGRGSES---VDQSKVDMLLSFGFQDDVARKALIASGGDIEK 474

Query: 61  ATYWILSNPDA-VSSMDATSSN 81
           AT WI SNPDA VS+MDAT+SN
Sbjct: 475 ATDWIFSNPDASVSNMDATASN 496


>Medtr8g464880.1 | ubiquitin carboxyl-terminal hydrolase | HC |
           chr8:23013826-23012843 | 20130731
          Length = 130

 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/82 (67%), Positives = 61/82 (74%), Gaps = 6/82 (7%)

Query: 1   MNWLLSHMDDPDIDTPIFESHGSETLTNVDQSKVDSLISFGFQEEISRKALKASGGDIDK 60
           + WL SH DDPDID PI E HGSE LT +DQSKVD LI FGFQE+I RKALKAS     K
Sbjct: 24  LTWLQSHEDDPDIDIPISEGHGSEALTTLDQSKVDHLIMFGFQEDIDRKALKAS-----K 78

Query: 61  ATYWILSNPDA-VSSMDATSSN 81
           AT WI SNP+A VS MDA +S+
Sbjct: 79  ATDWIFSNPEASVSGMDAVTSD 100