Miyakogusa Predicted Gene

Lj0g3v0260379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0260379.1 Non Characterized Hit- tr|B9HEU8|B9HEU8_POPTR
Putative uncharacterized protein OS=Populus
trichocarp,43.75,0.00000000006, ,CUFF.17160.1
         (196 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g022050.1 | outer envelope pore protein 24B | HC | chr1:68...   330   4e-91

>Medtr1g022050.1 | outer envelope pore protein 24B | HC |
           chr1:6801188-6798978 | 20130731
          Length = 213

 Score =  330 bits (847), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 164/196 (83%), Positives = 178/196 (90%)

Query: 1   MKAALKGRYDIDKNGGAAATLAVNAGDVKLRASITDATFINGPSLTGLVLAVEKPGSFII 60
           MKAA+KG+YD DKN  AAA++A NAGDVKLRASITDATFINGPSLTGLVLAVEKPGSF I
Sbjct: 1   MKAAVKGKYDNDKNAAAAASVAFNAGDVKLRASITDATFINGPSLTGLVLAVEKPGSFSI 60

Query: 61  DYNVPKKDLRFQFMNTVRVAEKPLNLTYIHSKADNRTILDGTLVFDAANKVSANYALDSG 120
           DYNVPKKD RFQFMNTVRVA+KPLNLTYIHSK DNRTILDGT V+D +NKVSANY ++SG
Sbjct: 61  DYNVPKKDFRFQFMNTVRVADKPLNLTYIHSKGDNRTILDGTFVWDPSNKVSANYGVESG 120

Query: 121 NCRLKYRYVHKGLTTFEPSYDVAKNTWDFAVSRRVYGDDSFGASYKTSSKVLGLEWSRNS 180
           NCRLKY YVHKGLTT EPSYDVAKN WDFAVSR+VYGDDS  A+Y+T+SK LG EWSRNS
Sbjct: 121 NCRLKYSYVHKGLTTIEPSYDVAKNAWDFAVSRKVYGDDSLKATYQTTSKKLGFEWSRNS 180

Query: 181 KQTGCFKIVASVNLAE 196
           KQ GCFK+VASVNLAE
Sbjct: 181 KQRGCFKVVASVNLAE 196