Miyakogusa Predicted Gene
- Lj0g3v0234229.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0234229.3 tr|G7JRF4|G7JRF4_MEDTR ATP-dependent DNA helicase
PIF1 OS=Medicago truncatula GN=MTR_4g036250 PE=4
S,53.59,0,UNCHARACTERIZED,NULL; seg,NULL,CUFF.15325.3
(322 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g447120.1 | AT hook motif protein, putative | LC | chr8:18... 185 6e-47
Medtr0048s0090.1 | hypothetical protein | LC | scaffold0048:3610... 154 9e-38
Medtr2g060870.1 | hypothetical protein | LC | chr2:25823903-2582... 141 8e-34
Medtr8g039210.1 | replication factor-A carboxy-terminal domain p... 110 2e-24
Medtr2g036820.1 | hypothetical protein | LC | chr2:15942832-1594... 99 6e-21
Medtr0077s0060.1 | hypothetical protein | HC | scaffold0077:3877... 96 5e-20
Medtr2g038740.1 | transmembrane protein, putative | LC | chr2:16... 87 3e-17
Medtr0003s0430.1 | hypothetical protein | LC | scaffold0003:2134... 84 2e-16
Medtr5g077490.1 | AT hook motif protein, putative | LC | chr5:33... 77 2e-14
Medtr1g106780.1 | hypothetical protein | LC | chr1:48084502-4808... 75 1e-13
Medtr3g056470.1 | hypothetical protein | LC | chr3:22498968-2249... 69 7e-12
Medtr8g066430.1 | AT hook motif protein, putative | LC | chr8:27... 63 4e-10
Medtr3g107750.1 | hypothetical protein | LC | chr3:49719263-4971... 58 1e-08
Medtr4g104400.1 | hypothetical protein | LC | chr4:43197409-4319... 54 1e-07
Medtr1g050372.1 | hypothetical protein | LC | chr1:19294794-1929... 54 3e-07
Medtr0003s0280.1 | hypothetical protein | LC | scaffold0003:1273... 49 5e-06
>Medtr8g447120.1 | AT hook motif protein, putative | LC |
chr8:18486456-18487766 | 20130731
Length = 258
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/214 (44%), Positives = 128/214 (59%), Gaps = 27/214 (12%)
Query: 21 CGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXXXXXXXXISGVDPRSKNF 80
C C ++MWY+ER +K P P FS+CCM G + KN
Sbjct: 28 CKQCGAMMWYDERIQKPYNPKKPRFSLCCMDGNI-----------------------KNG 64
Query: 81 KENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLY 140
K N +FSFTSLGGKI T +NDGN PP FI+NG+NYH+MGSL+P +G+ PKFAQLY
Sbjct: 65 KINTSM---MFSFTSLGGKINTSMNDGNAPPMFIMNGENYHQMGSLLPQDGSQPKFAQLY 121
Query: 141 IYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEMIDIHNPVAKLFRRVRDFANHNEGSN 200
IYDT NE NRM D+ + L+ S+V+D+ +++D NP A+ +R VRD N+ N
Sbjct: 122 IYDTNNEVANRMSVVGMDKDVSSLNSSIVEDIKQILDSCNPYAQAYRMVRDKLRTNDMPN 181
Query: 201 FYLRLFRRRNKDP-RVYNLLTSDEVAGLIVGDIE 233
LR+ +R +D R YN+ T+ E A LIVGD +
Sbjct: 182 LKLRILGKRGRDARRRYNIPTTSEAAALIVGDYD 215
>Medtr0048s0090.1 | hypothetical protein | LC |
scaffold0048:36104-39426 | 20130731
Length = 568
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 75/181 (41%), Positives = 107/181 (59%)
Query: 4 SAEVEAELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXX 63
S E+E L+ G TY C C ++MWYEER K +P+ P FS+CC++G+V
Sbjct: 387 SGGEESEYLNIGGPTYFCQKCGAMMWYEERVPKHTRPVIPRFSMCCLKGRVVLPPYEHLP 446
Query: 64 XXXXXXISGVDPRSKNFKENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHRM 123
D S+ F NIR++NS+F+FTS+GG++ N+G PP F++NG+NYH +
Sbjct: 447 QFLHDMYHKHDRVSRFFMNNIRSFNSMFAFTSMGGRVNNEQNNGKAPPMFVMNGENYHLI 506
Query: 124 GSLIPPEGAPPKFAQLYIYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEMIDIHNPVA 183
GSL+P PPKFAQLYIY T NE NRM D+ L ++ +L E++D +NP
Sbjct: 507 GSLLPMPEKPPKFAQLYIYHTDNEISNRMAAVSMDDGHFDLKNMIIGNLKELLDEYNPYV 566
Query: 184 K 184
+
Sbjct: 567 Q 567
>Medtr2g060870.1 | hypothetical protein | LC |
chr2:25823903-25821879 | 20130731
Length = 460
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 15/223 (6%)
Query: 92 SFTSLGGKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNR 151
S +S K + N+G GPP + GQ HR+GSL+P +G PP+F QLYIYDT+NE NR
Sbjct: 221 SESSNRSKFDSSFNNGKGPPTVRIQGQFCHRIGSLLPKDGEPPRFGQLYIYDTKNEIQNR 280
Query: 152 MRHFRSDERRNVLDPSLVKDLTEMIDIHNPVAKLFRRVRDFANHN-EGSNFYLRLFRRRN 210
++ R+++ +DP++V++L++M+ N AK F+ R+ N + + LRL R
Sbjct: 281 IQGVRNNKN---IDPTIVENLSKMLYEKNTHAKCFKMARERLNSDIHVPDLKLRLISDRK 337
Query: 211 KDPRVYNLLTSDEVAGLIVGDIENLEAGRDIIVKKQSGELVRIPEYHVSFLPLQDEIPVS 270
D RVYNL T EVA LI GD+ + E RDII++ Q G+L RI E+H S+L Q P+
Sbjct: 338 TDGRVYNLPTVSEVAALIAGDVGDAEE-RDIIIQGQGGQLQRIDEFHASYLAYQ--YPL- 393
Query: 271 EAFSNDADRKRFKISMLEFICFRLQEQITEYGNIVRAGRLFQR 313
F DR R I+ R EQI + ++ + RL R
Sbjct: 394 -LFPYGEDRYRPNIA------HRETEQIDDVMDVNKHNRLTIR 429
>Medtr8g039210.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:14593466-14588967 | 20130731
Length = 678
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 99/216 (45%), Gaps = 28/216 (12%)
Query: 12 LDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXXXXXXXXIS 71
+D G + C C S MW ER++K +P P FS+CC++G V ++
Sbjct: 278 MDLGHPNFECEKCGSTMWSNERADKPYRPRKPTFSLCCLKGDVSLEFLEQPPDYLKELLA 337
Query: 72 GVDPR-SKNFKENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPE 130
R S F+E IRAYNS+F+FT++G KI +N G
Sbjct: 338 YKGGRHSVKFREKIRAYNSIFAFTAMGAKIDNTMNLRPG--------------------- 376
Query: 131 GAPPKFAQLYIYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEMIDIHNPVAKLFRRVR 190
LY++DT+NE NR+ + L +V+ L +M+D++N VAKLFR R
Sbjct: 377 ------LYLYVHDTENEIQNRLSSLNGGKIARDLAADIVRRLKDMLDMNNSVAKLFRMAR 430
Query: 191 DFANHNEGSNFYLRLFRRRNKDPRVYNLLTSDEVAG 226
D + E +RL R+ D R Y T+ E+
Sbjct: 431 DRLSVPENKEVRIRLIGTRSNDSRQYTAPTATEIVA 466
>Medtr2g036820.1 | hypothetical protein | LC |
chr2:15942832-15941387 | 20130731
Length = 238
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 2 YASAEVEAELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXX 61
+ EV+ + LD GD C CN+ +W E S++ + SICCM+GK+
Sbjct: 99 FQHGEVQ-DYLDIGDMDSVCRRCNAQVWLGECSQRRHSTPTIDASICCMKGKITLPNMIE 157
Query: 62 XXXXXXXXISGVDPRSKNFKENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYH 121
+GVDPRS +F G P+F+++GQNYH
Sbjct: 158 PPPLLRGLFNGVDPRSAHFI-------------------------GPDSPHFVISGQNYH 192
Query: 122 RMGSLIPPEGAPPKFAQLYIYDTQNETDNRMRHF 155
R+GSL+ +G PKF QLY YDT+NE NR+ HF
Sbjct: 193 RIGSLLLADGQAPKFCQLYTYDTENELVNRLSHF 226
>Medtr0077s0060.1 | hypothetical protein | HC |
scaffold0077:38771-37419 | 20130731
Length = 323
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 123/293 (41%), Gaps = 28/293 (9%)
Query: 46 SICCMRGKVDXXXXXXXXXXXXXXISGVDPRSKNFKENIRAYNSLFSFTSLGGKI-QTGL 104
SICC G S ++F++NIR YN + SFTSLG I +T
Sbjct: 10 SICCKNGNA-TVTQVAAPEELRQLFSDTTIEGRHFRQNIRGYNHVMSFTSLGVHIDETMH 68
Query: 105 NDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMRHFRSDERRNVL 164
G F G YH++G P +G+ P+F QLYIYDT NE NRM L
Sbjct: 69 ATSRGIYTFRAQGSIYHKIGGFHPNQGSRPRFLQLYIYDTDNELQNRM------IENPQL 122
Query: 165 DPSLVKDLTEMIDIHNPVAKLFRRVRDFANHNEGSNFYLRLFRRRNKDPRVYNLLTSDEV 224
+ +V+ L M+ +NP R++ N +E L + R + YNL ++ EV
Sbjct: 123 NQDVVRRLQNMLYQYNPFVHNLRQLALQPNVHECR----LLIKERPSNQPQYNLPSASEV 178
Query: 225 AGLIV-GDIENLEAGRDIIVKKQSGELVRIPEYHVSFL----PLQDEIPVSEAFSNDADR 279
A +IV GD LE GRDI + G L +I S L L + V + R
Sbjct: 179 AAIIVGGDDVTLERGRDINIFSNDGNLQKIRANDRSILLKSGRLLQQYVVDNYVKIETGR 238
Query: 280 KRF----------KISMLEFICFRLQEQITEYGNIVRAGRLFQRFIEC-WSLS 321
R KI + E RL + + V F RF+ WSL+
Sbjct: 239 LRKLGLAPKDPEQKIKVTETGHVRLSDHLVRLSKQVTVAIHFVRFLVTDWSLT 291
>Medtr2g038740.1 | transmembrane protein, putative | LC |
chr2:16965530-16968232 | 20130731
Length = 678
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 53/72 (73%)
Query: 81 KENIRAYNSLFSFTSLGGKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLY 140
KEN+R +NS+F+FTS+ G I +N+G PP F+++G+NY ++GSL+ PKFAQLY
Sbjct: 258 KENMRLFNSMFAFTSMEGDIDNSMNNGKAPPIFVIHGENYPQIGSLLVRPENDPKFAQLY 317
Query: 141 IYDTQNETDNRM 152
+YDT NE NRM
Sbjct: 318 VYDTDNEIKNRM 329
>Medtr0003s0430.1 | hypothetical protein | LC |
scaffold0003:213419-210869 | 20130731
Length = 437
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 105/247 (42%), Gaps = 46/247 (18%)
Query: 21 CGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVDXXXXXXXXXXXXXXISGVDPRSKNF 80
C CN ++Y+E +CC G S ++F
Sbjct: 204 CRQCNGKLFYKETQ-----------YMCCKNGNA-TVTQVAAPEELRQLFSDTTIAGRHF 251
Query: 81 KENIRAYNSLFSFTSLGGKI-QTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQL 139
++NI+ YN + SFTSLG I +T G F G +H++G P +G+ P+F QL
Sbjct: 252 RQNIKGYNHVMSFTSLGVHIDETMHATSRGIYTFRAQGSIFHKIGGFHPNQGSRPRFLQL 311
Query: 140 YIYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEM-IDIHNPVAKLFRRVRDFANHNEG 198
YIYDT NE NRM + +P L + + + ++H +L
Sbjct: 312 YIYDTDNELQNRM----------IENPQLNQAVLALQSNVHE--CRL------------- 346
Query: 199 SNFYLRLFRRRNKDPRVYNLLTSDEVAGLIV-GDIENLEAGRDIIVKKQSGELVRIPEYH 257
L + R + YNL ++ +VA +IV GD LE GRDI + G L ++ E
Sbjct: 347 ------LIKERLSNQPQYNLPSASQVAAIIVGGDDVTLERGRDINIFSNDGNLQKVQETM 400
Query: 258 VSFLPLQ 264
+ PLQ
Sbjct: 401 GYYDPLQ 407
>Medtr5g077490.1 | AT hook motif protein, putative | LC |
chr5:33074217-33074829 | 20130731
Length = 148
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 98 GKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMRHFRS 157
GKI NDG+G F+L GQNYH MGS++P + PKFAQ+YIYDTQNE+ N+ + +
Sbjct: 3 GKIDRTTNDGDGAIYFVLRGQNYHNMGSMMPESDSTPKFAQIYIYDTQNESKNQ---YNA 59
Query: 158 DERRNVLDPSLVKDL 172
L+ SLVK +
Sbjct: 60 SNASQSLNESLVKTV 74
>Medtr1g106780.1 | hypothetical protein | LC |
chr1:48084502-48083880 | 20130731
Length = 129
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 98 GKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMR 153
GKI NDG+G F+L GQNYH MGS++P + PKFAQ+YIYDTQNE+ N+ +
Sbjct: 3 GKIDHTTNDGDGVVYFVLRGQNYHNMGSMMPESDSTPKFAQIYIYDTQNESKNQYK 58
>Medtr3g056470.1 | hypothetical protein | LC |
chr3:22498968-22498359 | 20130731
Length = 127
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 98 GKIQTGLNDGNGPPNFILNGQNYHRMGSLIPPEGAPPKFAQLYIYDTQNETDNRMR 153
GKI NDG+G +L GQNYH GS++P + PKFAQ+YIYDTQNE+ N+ +
Sbjct: 3 GKIDRAKNDGDGLAYIVLKGQNYHHKGSMMPESDSTPKFAQIYIYDTQNESKNQYK 58
>Medtr8g066430.1 | AT hook motif protein, putative | LC |
chr8:27616321-27616948 | 20130731
Length = 112
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 55/97 (56%)
Query: 136 FAQLYIYDTQNETDNRMRHFRSDERRNVLDPSLVKDLTEMIDIHNPVAKLFRRVRDFANH 195
+ QLY++DT NE NR+ + + LD ++V++L ++D +N + KLFR RD +
Sbjct: 12 YTQLYVHDTDNEVQNRLCSLKEGKSAQALDVNIVQNLKVILDENNKIVKLFRMARDRLSA 71
Query: 196 NEGSNFYLRLFRRRNKDPRVYNLLTSDEVAGLIVGDI 232
+ ++RLF R+ + R Y + T+ E+A D+
Sbjct: 72 PDAKENHIRLFDTRSNELRQYTIPTTTEIAKTFPSDL 108
>Medtr3g107750.1 | hypothetical protein | LC |
chr3:49719263-49718147 | 20130731
Length = 198
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 10 ELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVD 55
+ D G+ + C +C +MWYEER K R PEFS+CCM+G+++
Sbjct: 49 DYFDVGEPAFVCRWCKEVMWYEERVSKHRNTSIPEFSMCCMQGRIE 94
>Medtr4g104400.1 | hypothetical protein | LC |
chr4:43197409-43196215 | 20130731
Length = 167
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 6 EVEAELLDFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKVD 55
E ++ G+ + C +C +IMWYEER K NPEFS+CCM+G ++
Sbjct: 110 ENASDYYSVGELRFICPWCGAIMWYEERVSKHTDTSNPEFSLCCMQGIIE 159
>Medtr1g050372.1 | hypothetical protein | LC |
chr1:19294794-19294287 | 20130731
Length = 110
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 13 DFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKV 54
D GD C C + MWY+ER +KSR NP+F +CC GK+
Sbjct: 63 DLGDPLMECQRCGACMWYQERKQKSRHSANPKFGLCCGDGKI 104
>Medtr0003s0280.1 | hypothetical protein | LC |
scaffold0003:127391-126831 | 20130731
Length = 148
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 13 DFGDATYTCGYCNSIMWYEERSEKSRQPLNPEFSICCMRGKV 54
D GD C +C ++MWY+ER +K R P+F +CC GKV
Sbjct: 98 DIGDPISECEHCGALMWYQERKDKYRNSSIPKFMMCCGNGKV 139