Miyakogusa Predicted Gene

Lj0g3v0227459.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0227459.3 Non Characterized Hit- tr|I1H9E8|I1H9E8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,49.48,5e-19,Ribonuclease H-like,Ribonuclease H-like domain;
SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL,CUFF.14833.3
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g034530.1 | hypothetical protein | LC | chr5:14993712-1499...    48   2e-06

>Medtr5g034530.1 | hypothetical protein | LC |
          chr5:14993712-14993306 | 20130731
          Length = 111

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 8  LNGDHLHMRCFAHILNLVVKDDLKVIDEYVLRIRVAIKYVRVSYGRMRKFKT 59
          +NG   HMRC AH+LNLVV D LK +   V R+R A+++V +    ++ F+T
Sbjct: 27 MNGFGFHMRCCAHVLNLVVIDGLKYVHSSVSRVRNAVQFVDLHPIGLQSFRT 78