Miyakogusa Predicted Gene

Lj0g3v0215509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0215509.1 Non Characterized Hit- tr|A5APC0|A5APC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,96.25,5.00264e-43,LSM,Ribonucleoprotein LSM domain; no
description,NULL; Sm-like ribonucleoproteins,Like-Sm (LSM)
doma,CUFF.13894.1
         (81 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g108700.1 | u6 snRNA-associated-like-Smprotein | HC | chr7...   177   3e-45
Medtr8g091620.3 | u6 snRNA-associated-like-Smprotein | HC | chr8...   176   4e-45
Medtr8g091620.2 | u6 snRNA-associated-like-Smprotein | HC | chr8...   176   4e-45
Medtr8g091620.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...   176   4e-45
Medtr8g058420.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...   176   4e-45
Medtr8g058537.1 | u6 snRNA-associated-like-Smprotein | HC | chr8...   176   4e-45
Medtr1g088710.1 | u6 snRNA-associated-like-Smprotein | HC | chr1...   144   2e-35
Medtr8g092200.1 | small nuclear ribonucleoprotein | HC | chr8:38...    58   2e-09

>Medtr7g108700.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr7:44281904-44284914 | 20130731
          Length = 150

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Medtr8g091620.3 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score =  176 bits (447), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Medtr8g091620.2 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score =  176 bits (447), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Medtr8g091620.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:38229412-38226145 | 20130731
          Length = 150

 Score =  176 bits (447), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Medtr8g058420.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:20197505-20199390 | 20130731
          Length = 146

 Score =  176 bits (446), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Medtr8g058537.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr8:20159925-20158080 | 20130731
          Length = 146

 Score =  176 bits (446), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 80/81 (98%), Positives = 81/81 (100%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT+KDGDRFWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQE 81
          IRGNTIKYLRVPDEVIDKVQE
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQE 81


>Medtr1g088710.1 | u6 snRNA-associated-like-Smprotein | HC |
          chr1:39681694-39680516 | 20130731
          Length = 106

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 69/75 (92%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECY 60
          M PLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREV CT+ DGDRFW MP+CY
Sbjct: 1  MFPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVFCTSNDGDRFWYMPKCY 60

Query: 61 IRGNTIKYLRVPDEV 75
          IRGNTIKYLR+P  +
Sbjct: 61 IRGNTIKYLRLPPSL 75


>Medtr8g092200.1 | small nuclear ribonucleoprotein | HC |
          chr8:38530552-38528326 | 20130731
          Length = 131

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTNKDGDRFWRMPECYI 61
          +P+ LL  A GH + VELK+GE Y G+++ C+   N  L  +  T KDG +  ++   +I
Sbjct: 7  IPVKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDG-KTSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ ++++ +PD
Sbjct: 66 RGSKVRFMVIPD 77