Miyakogusa Predicted Gene

Lj0g3v0208229.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208229.1 tr|G7J6N4|G7J6N4_MEDTR ATP-dependent DNA helicase
recG OS=Medicago truncatula GN=MTR_3g079920 PE=4
S,68.57,7e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.13346.1
         (70 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g031140.1 | ATP-dependent DNA helicase RecG | HC | chr1:10...   142   6e-35
Medtr3g079915.1 | ATP-dependent DNA helicase RecG | HC | chr3:36...    51   2e-07

>Medtr1g031140.1 | ATP-dependent DNA helicase RecG | HC |
           chr1:10876622-10858818 | 20130731
          Length = 984

 Score =  142 bits (359), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/70 (92%), Positives = 67/70 (95%)

Query: 1   MLEGLGTQIEKDGLLDKYRRPENNAVCTEEWSCLTKKVLELLPYTLTSSQLQAVSEIIWD 60
           MLEGLGTQ+EK GLLDKYRRPENN VCT+EWSCLTKKVLELLPYTLTS QLQAVSEIIWD
Sbjct: 488 MLEGLGTQVEKIGLLDKYRRPENNTVCTKEWSCLTKKVLELLPYTLTSGQLQAVSEIIWD 547

Query: 61  LKRPVPMNRL 70
           LKRPVPMNRL
Sbjct: 548 LKRPVPMNRL 557


>Medtr3g079915.1 | ATP-dependent DNA helicase RecG | HC |
           chr3:36124323-36116041 | 20130731
          Length = 174

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 24/26 (92%)

Query: 1   MLEGLGTQIEKDGLLDKYRRPENNAV 26
           MLEGLGTQ+EK GLLDKYRRPENN V
Sbjct: 116 MLEGLGTQVEKVGLLDKYRRPENNTV 141