Miyakogusa Predicted Gene

Lj0g3v0201039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201039.1 Non Characterized Hit- tr|I1IB51|I1IB51_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,61.62,6e-17,seg,NULL,CUFF.12766.1
         (99 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g077017.1 | hypothetical protein | HC | chr3:34575858-3457...   123   5e-29
Medtr3g077017.2 | hypothetical protein | HC | chr3:34575858-3457...   123   5e-29

>Medtr3g077017.1 | hypothetical protein | HC |
          chr3:34575858-34578342 | 20130731
          Length = 97

 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/66 (92%), Positives = 63/66 (95%), Gaps = 1/66 (1%)

Query: 1  MLQFPAFMTQYPMSTRTIPTSFLLPSQWPQPQNEEFLLAMEESDFEEKCNEIRKMNSNLI 60
          MLQFPAFMTQY +STR IPTSFLLPSQWPQPQNEE LLAMEESDFEEKCNEIRKMNSNLI
Sbjct: 1  MLQFPAFMTQYQLSTR-IPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLI 59

Query: 61 MIGKTT 66
          +IGKTT
Sbjct: 60 IIGKTT 65


>Medtr3g077017.2 | hypothetical protein | HC |
          chr3:34575858-34578230 | 20130731
          Length = 97

 Score =  123 bits (308), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/66 (92%), Positives = 63/66 (95%), Gaps = 1/66 (1%)

Query: 1  MLQFPAFMTQYPMSTRTIPTSFLLPSQWPQPQNEEFLLAMEESDFEEKCNEIRKMNSNLI 60
          MLQFPAFMTQY +STR IPTSFLLPSQWPQPQNEE LLAMEESDFEEKCNEIRKMNSNLI
Sbjct: 1  MLQFPAFMTQYQLSTR-IPTSFLLPSQWPQPQNEELLLAMEESDFEEKCNEIRKMNSNLI 59

Query: 61 MIGKTT 66
          +IGKTT
Sbjct: 60 IIGKTT 65