Miyakogusa Predicted Gene

Lj0g3v0158249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0158249.1 Non Characterized Hit- tr|D8RUG2|D8RUG2_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,51.85,5e-19,seg,NULL,CUFF.9931.1
         (130 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g107550.2 | transmembrane protein, putative | HC | chr3:49...   155   8e-39
Medtr3g107550.1 | transmembrane protein, putative | HC | chr3:49...   155   8e-39
Medtr4g011110.1 | transmembrane protein, putative | HC | chr4:26...    76   8e-15

>Medtr3g107550.2 | transmembrane protein, putative | HC |
           chr3:49605125-49607081 | 20130731
          Length = 261

 Score =  155 bits (392), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 84/92 (91%)

Query: 31  IAARIYFLLILFQIPLFRVTCRSGVCTNPLHVTSSQLIASEIFPVPVVKGLLYPGAVVHG 90
           IAARIY L+I+FQ+PLFRVTCRSG+CT PLHVTSSQL+AS++FPVP+VKGLLYPGA ++G
Sbjct: 68  IAARIYLLIIIFQVPLFRVTCRSGLCTTPLHVTSSQLVASDVFPVPLVKGLLYPGAALNG 127

Query: 91  LIHNMSVPSWGNLLETYNLTAVKNASAVTDLH 122
           LIHNM+VP+W +LL+ YNLT +K ASAVTDL 
Sbjct: 128 LIHNMTVPTWDSLLDVYNLTTIKEASAVTDLQ 159


>Medtr3g107550.1 | transmembrane protein, putative | HC |
           chr3:49605125-49606989 | 20130731
          Length = 261

 Score =  155 bits (392), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 69/92 (75%), Positives = 84/92 (91%)

Query: 31  IAARIYFLLILFQIPLFRVTCRSGVCTNPLHVTSSQLIASEIFPVPVVKGLLYPGAVVHG 90
           IAARIY L+I+FQ+PLFRVTCRSG+CT PLHVTSSQL+AS++FPVP+VKGLLYPGA ++G
Sbjct: 68  IAARIYLLIIIFQVPLFRVTCRSGLCTTPLHVTSSQLVASDVFPVPLVKGLLYPGAALNG 127

Query: 91  LIHNMSVPSWGNLLETYNLTAVKNASAVTDLH 122
           LIHNM+VP+W +LL+ YNLT +K ASAVTDL 
Sbjct: 128 LIHNMTVPTWDSLLDVYNLTTIKEASAVTDLQ 159


>Medtr4g011110.1 | transmembrane protein, putative | HC |
           chr4:2616576-2619598 | 20130731
          Length = 283

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 47  FRVTCRSGVCTNPLHVTSSQLIASEIFPVPVVKGLLYPGAVVHGLIHNMSVPSWGNLLET 106
           F V CR G+C  PL +T SQLIASE+FP+ +VK L+YPG+V   +    ++PS+ NLL  
Sbjct: 118 FSVPCRRGICKTPLELTCSQLIASEVFPLFIVKALIYPGSVAKAIFKLKTIPSYRNLLHN 177

Query: 107 YNLTAVKNASAVTDLH 122
           +N    +  SAV++L 
Sbjct: 178 FN---TRTISAVSELQ 190