Miyakogusa Predicted Gene
- Lj0g3v0141839.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0141839.1 tr|G7J6E7|G7J6E7_MEDTR Transcription factor HEC2
OS=Medicago truncatula GN=MTR_3g101810 PE=4 SV=1,51.98,0,seg,NULL;
coiled-coil,NULL; helix loop helix domain,Helix-loop-helix domain;
HLH, helix-loop-helix D,CUFF.8658.1
(238 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g101810.1 | transcription factor | HC | chr3:46898499-4689... 164 9e-41
Medtr5g017210.1 | helix loop helix DNA-binding domain protein | ... 153 1e-37
Medtr8g093500.1 | basic helix loop helix (BHLH) DNA-binding fami... 120 2e-27
Medtr2g100490.1 | basic helix loop helix (BHLH) DNA-binding fami... 108 5e-24
Medtr8g015450.2 | transcription factor | HC | chr8:5042676-50403... 102 3e-22
Medtr8g015450.1 | transcription factor | HC | chr8:5042658-50402... 102 3e-22
Medtr8g015450.4 | transcription factor | HC | chr8:5042447-50402... 102 3e-22
Medtr8g015450.3 | transcription factor | HC | chr8:5042676-50402... 102 3e-22
Medtr7g069590.1 | helix loop helix DNA-binding domain protein | ... 68 7e-12
Medtr5g079500.1 | BHLH transcription factor, putative | HC | chr... 57 2e-08
Medtr1g106460.1 | basic helix loop helix (BHLH) DNA-binding fami... 54 9e-08
Medtr1g018090.1 | helix loop helix DNA-binding domain protein | ... 53 3e-07
Medtr5g005110.1 | transcription factor | HC | chr5:277903-279787... 52 4e-07
Medtr3g103030.1 | transcription factor | HC | chr3:47454820-4745... 52 4e-07
Medtr4g131160.1 | BHLH transcription factor | HC | chr4:54719229... 52 4e-07
Medtr4g131160.2 | BHLH transcription factor | HC | chr4:54719229... 52 5e-07
Medtr2g067000.1 | transcription factor | LC | chr2:28008943-2801... 50 1e-06
>Medtr3g101810.1 | transcription factor | HC |
chr3:46898499-46899776 | 20130731
Length = 271
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 112/251 (44%), Positives = 137/251 (54%), Gaps = 49/251 (19%)
Query: 25 PESPASHGNNNNTVTSFPPP--QIFSSATSINN--------NNPPT--PWXXXXXXXXXX 72
PE +S+GNNN T+ FPP Q + ++ + NN +NPP PW
Sbjct: 28 PEFSSSNGNNN-TINQFPPSDQQFYGTSNASNNTRPLADLIDNPPNQIPWSSSSSFTHLP 86
Query: 73 XXXXXXNKLYTFM--------------TPVL---------PEQDHHQTPEEPKLLNSEKS 109
F TP++ P +H+ T SEK
Sbjct: 87 SQSTTNTNTIYFTNNNSTPLMFQQQQTTPLMFSNSSNEIAPNTNHYGTASP-----SEKR 141
Query: 110 SSMAAMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQ 169
+SMAAMREMIFR+AAMQP+ ID ESVKPPKRRNVKISKDPQS+AA LQ
Sbjct: 142 NSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQ 201
Query: 170 RMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQ-RLTAANS-----CSRVGFPASYLPTT 223
RMVPGGTKMDTASMLDEAIHY+KFLK Q++SLQ R + ANS S +GFP S LP
Sbjct: 202 RMVPGGTKMDTASMLDEAIHYVKFLKTQLKSLQERASGANSNRTVAGSGLGFPVS-LP-K 259
Query: 224 KGYQTQSVNCF 234
YQ ++V+ +
Sbjct: 260 PNYQDRNVDRY 270
>Medtr5g017210.1 | helix loop helix DNA-binding domain protein | HC
| chr5:6259145-6259888 | 20130731
Length = 247
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 87/111 (78%)
Query: 107 EKSSSMAAMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXX 166
EK +SM+AMREMIFRMA MQP+ ID E++KPPKR+NVKISKDPQSVAA
Sbjct: 105 EKKNSMSAMREMIFRMAVMQPINIDPETIKPPKRKNVKISKDPQSVAARHRRERISERIR 164
Query: 167 XLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRLTAANSCSRVGFPA 217
LQR+VPGGTKMDTASMLDEAIHY+KFLKKQVQ+L+++ A + VGFP
Sbjct: 165 ILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQVGANRPLNVVGFPG 215
>Medtr8g093500.1 | basic helix loop helix (BHLH) DNA-binding family
protein | HC | chr8:39073120-39074019 | 20130731
Length = 275
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/91 (60%), Positives = 71/91 (78%)
Query: 112 MAAMREMIFRMAAMQPVVIDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRM 171
+ AM+EM++++AAMQPV ID +++ PKRRNV+IS+DPQSVAA LQR+
Sbjct: 87 LGAMKEMMYKIAAMQPVDIDPATIRKPKRRNVRISEDPQSVAARHRRERISEKIRILQRL 146
Query: 172 VPGGTKMDTASMLDEAIHYLKFLKKQVQSLQ 202
VPGGTKMDTASMLDEAI Y+KFLK+Q++ LQ
Sbjct: 147 VPGGTKMDTASMLDEAIRYVKFLKRQIKLLQ 177
>Medtr2g100490.1 | basic helix loop helix (BHLH) DNA-binding family
protein | HC | chr2:43188546-43186559 | 20130731
Length = 392
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 77/117 (65%), Gaps = 5/117 (4%)
Query: 111 SMAAMREMIFRMAAMQPVV-IDSESVKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQ 169
++A M+EMI+R AA +PV + E ++ PKR+NVKISKDPQ+VAA LQ
Sbjct: 261 AIAQMKEMIYRAAAFRPVTNLGLEVMEKPKRKNVKISKDPQTVAARQRRERISERIRVLQ 320
Query: 170 RMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQ----RLTAANSCSRVGFPASYLPT 222
++VPGGTKMDTASMLDEA +YLKFL+ QV+ L+ ++ N+C S+ P+
Sbjct: 321 KIVPGGTKMDTASMLDEAANYLKFLRAQVKELENIGNKIDTVNNCPPTNIAFSFNPS 377
>Medtr8g015450.2 | transcription factor | HC | chr8:5042676-5040349
| 20130731
Length = 430
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 4/98 (4%)
Query: 111 SMAAMREMIFRMAAMQPVVIDSESV----KPPKRRNVKISKDPQSVAAXXXXXXXXXXXX 166
++A M+EM++R AA +PV + + K PKR+NVKIS DPQ+VAA
Sbjct: 296 AIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISERIR 355
Query: 167 XLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRL 204
LQ++VPGG+KMDTASMLDEA +YLKFL+ QV++L+ L
Sbjct: 356 VLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENL 393
>Medtr8g015450.1 | transcription factor | HC | chr8:5042658-5040280
| 20130731
Length = 430
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 4/98 (4%)
Query: 111 SMAAMREMIFRMAAMQPVVIDSESV----KPPKRRNVKISKDPQSVAAXXXXXXXXXXXX 166
++A M+EM++R AA +PV + + K PKR+NVKIS DPQ+VAA
Sbjct: 296 AIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISERIR 355
Query: 167 XLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRL 204
LQ++VPGG+KMDTASMLDEA +YLKFL+ QV++L+ L
Sbjct: 356 VLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENL 393
>Medtr8g015450.4 | transcription factor | HC | chr8:5042447-5040280
| 20130731
Length = 430
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 4/98 (4%)
Query: 111 SMAAMREMIFRMAAMQPVVIDSESV----KPPKRRNVKISKDPQSVAAXXXXXXXXXXXX 166
++A M+EM++R AA +PV + + K PKR+NVKIS DPQ+VAA
Sbjct: 296 AIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISERIR 355
Query: 167 XLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRL 204
LQ++VPGG+KMDTASMLDEA +YLKFL+ QV++L+ L
Sbjct: 356 VLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENL 393
>Medtr8g015450.3 | transcription factor | HC | chr8:5042676-5040280
| 20130731
Length = 430
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 68/98 (69%), Gaps = 4/98 (4%)
Query: 111 SMAAMREMIFRMAAMQPVVIDSESV----KPPKRRNVKISKDPQSVAAXXXXXXXXXXXX 166
++A M+EM++R AA +PV + + K PKR+NVKIS DPQ+VAA
Sbjct: 296 AIAQMKEMMYRAAAFRPVNFGMDDIDVIEKKPKRKNVKISNDPQTVAARHRRERISERIR 355
Query: 167 XLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRL 204
LQ++VPGG+KMDTASMLDEA +YLKFL+ QV++L+ L
Sbjct: 356 VLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENL 393
>Medtr7g069590.1 | helix loop helix DNA-binding domain protein | HC
| chr7:25645518-25644662 | 20130731
Length = 153
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%)
Query: 145 ISKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQV 198
+S DPQSVAA LQ M+PGG+K+DT SML+EAIHY+KFLKKQ+
Sbjct: 32 LSTDPQSVAARERRHRISDRFKILQSMIPGGSKLDTVSMLEEAIHYVKFLKKQI 85
>Medtr5g079500.1 | BHLH transcription factor, putative | HC |
chr5:33988652-33990553 | 20130731
Length = 311
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 146 SKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSL 201
SKDPQSVAA LQ +VP G+K+D +ML++AI Y+KFL+ QV+ L
Sbjct: 225 SKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVL 280
>Medtr1g106460.1 | basic helix loop helix (BHLH) DNA-binding family
protein | HC | chr1:48142311-48140254 | 20130731
Length = 330
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 135 VKPPKRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFL 194
+K R N + DPQ V A LQ +VP GTK+D ++ML+EA+ Y+KFL
Sbjct: 234 LKGKSRCNGGSASDPQGVYAKKRRERINERLKILQSLVPNGTKVDISTMLEEAVQYVKFL 293
Query: 195 KKQVQSL 201
+ Q++ L
Sbjct: 294 QVQIKLL 300
>Medtr1g018090.1 | helix loop helix DNA-binding domain protein | LC
| chr1:5273706-5271864 | 20130731
Length = 366
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 148 DPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSL 201
DPQS+ A LQ +VP GTK+D ++ML+EA++Y+KFL+ Q++ L
Sbjct: 283 DPQSLYARKRRERINERLRVLQNLVPNGTKVDISTMLEEAVNYVKFLQTQIKLL 336
>Medtr5g005110.1 | transcription factor | HC | chr5:277903-279787 |
20130731
Length = 331
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 148 DPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSL 201
DPQS+ A LQ +VP GTK+D ++ML+EA+ Y+KFL+ Q++ L
Sbjct: 233 DPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLL 286
>Medtr3g103030.1 | transcription factor | HC |
chr3:47454820-47457040 | 20130731
Length = 321
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 139 KRRNVKISKDPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQV 198
KR + + DPQS+ A LQ +VP GTK+D ++ML++AI Y+KFL+ Q+
Sbjct: 229 KRASRGSATDPQSLYARKRREKINERLRTLQNLVPNGTKVDISTMLEDAIQYVKFLQLQI 288
Query: 199 QSL 201
+ L
Sbjct: 289 KLL 291
>Medtr4g131160.1 | BHLH transcription factor | HC |
chr4:54719229-54715702 | 20130731
Length = 400
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 148 DPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRLTAA 207
DP S+A LQ +VP K D ASMLDE I Y+KFL+ QV+ L
Sbjct: 205 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVL------ 258
Query: 208 NSCSRVGFPASYLPTTKGYQTQSV-NCFR 235
S SR+G + P ++ V +C +
Sbjct: 259 -SMSRLGGAGAVAPLVADMSSEGVSDCVQ 286
>Medtr4g131160.2 | BHLH transcription factor | HC |
chr4:54719229-54715448 | 20130731
Length = 403
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 148 DPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDEAIHYLKFLKKQVQSLQRLTAA 207
DP S+A LQ +VP K D ASMLDE I Y+KFL+ QV+ L
Sbjct: 208 DPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVL------ 261
Query: 208 NSCSRVGFPASYLPTTKGYQTQSV-NCFR 235
S SR+G + P ++ V +C +
Sbjct: 262 -SMSRLGGAGAVAPLVADMSSEGVSDCVQ 289
>Medtr2g067000.1 | transcription factor | LC |
chr2:28008943-28010079 | 20130731
Length = 298
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 134 SVKPPKRRNVKISK-------DPQSVAAXXXXXXXXXXXXXLQRMVPGGTKMDTASMLDE 186
V+PP KI K QS+AA L ++VPGG KM+TA ML+
Sbjct: 145 EVEPPFAATSKIEKKVTERTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLNA 204
Query: 187 AIHYLKFLKKQVQSLQRL 204
A +Y+KFL+ QV LQ +
Sbjct: 205 AANYVKFLQAQVGMLQLM 222