Miyakogusa Predicted Gene

Lj0g3v0128219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0128219.1 tr|B9HNX6|B9HNX6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650065 PE=4
SV=1,56.19,2e-19,seg,NULL; PST2_GOSHI_P31336;,NULL,CUFF.7719.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g030850.1 | photosystem II 5 kDa protein | HC | chr3:98012...   110   4e-25
Medtr3g030860.1 | photosystem II 5 kDa protein | HC | chr3:98022...   107   3e-24
Medtr4g037505.1 | photosystem II 5 kDa protein | HC | chr4:13801...   100   4e-22

>Medtr3g030850.1 | photosystem II 5 kDa protein | HC |
           chr3:9801215-9799806 | 20130731
          Length = 106

 Score =  110 bits (274), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 72/106 (67%), Gaps = 5/106 (4%)

Query: 1   MASFTMTASILGSPVLTNRSAVATQRRFVVNAAATRAVEGDNKV---NEEGSNNGRRNLM 57
           MAS TMT+SILG P +TN+S+VA+QRR VV   A RAVEG+  +   N +  +NGRR+LM
Sbjct: 1   MASITMTSSILGFPAVTNQSSVASQRRLVV-VNAVRAVEGEKMIRYDNSKEGSNGRRDLM 59

Query: 58  FXXXXXXXXXXXXXXXXDE-PKNGSPEAKKKYAPVCVTMPTARVCR 102
           F                DE PK G+PEAKKKYAPVCVTMPTAR+CR
Sbjct: 60  FAAAAAAVSTFAGVAMADEEPKRGTPEAKKKYAPVCVTMPTARICR 105


>Medtr3g030860.1 | photosystem II 5 kDa protein | HC |
           chr3:9802279-9801536 | 20130731
          Length = 105

 Score =  107 bits (266), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 74/107 (69%), Gaps = 8/107 (7%)

Query: 1   MASFTMTASILGSPVLTNRSAVATQRRFVVNAAATRAVEGDNKV----NEEGSNNGRRNL 56
           MAS TMT+S++G P +TNRS+VATQRRFVV  +A RAVEG+  V    ++EGSN GRR+L
Sbjct: 1   MASITMTSSMVGFPAVTNRSSVATQRRFVV--SAVRAVEGEKTVKYDDDKEGSN-GRRDL 57

Query: 57  MFXXXXXXXXXXXXX-XXXDEPKNGSPEAKKKYAPVCVTMPTARVCR 102
           MF                 DEP+ G+PEAKKKY PVCVT PTAR+CR
Sbjct: 58  MFAAAAAAVCSVAGVAMADDEPRRGTPEAKKKYGPVCVTNPTARICR 104


>Medtr4g037505.1 | photosystem II 5 kDa protein | HC |
           chr4:13801668-13800984 | 20130731
          Length = 108

 Score =  100 bits (248), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 67/108 (62%), Gaps = 7/108 (6%)

Query: 1   MASFTMTASILG-SPVLTNRSAVATQRRFVVNAAATRAVEGD----NKVNEEGSNNGRRN 55
           MAS TMTA+  G S  + NRS VATQR+ VV A A +AVEG     N  NE+   NGRRN
Sbjct: 1   MASITMTAAFFGGSSAIANRSPVATQRKLVV-ANAAKAVEGGKMKVNYDNEKEETNGRRN 59

Query: 56  LMFXXXXXXX-XXXXXXXXXDEPKNGSPEAKKKYAPVCVTMPTARVCR 102
           +MF                 DEPK GSPEAKK YAPVCVTMPTAR+CR
Sbjct: 60  IMFAAAAAAVCSVAGMALAADEPKRGSPEAKKAYAPVCVTMPTARICR 107