Miyakogusa Predicted Gene

Lj0g3v0127389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0127389.1 Non Characterized Hit- tr|D8T6S5|D8T6S5_SELML
Putative uncharacterized protein EID1-2
OS=Selaginella,32.12,8e-17,seg,NULL; F-box domain,F-box domain,
cyclin-like; no description,NULL; F-box-like,NULL,CUFF.7662.1
         (312 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g058520.1 | phytochrome A-associated F-box protein, putati...   369   e-102
Medtr7g108820.1 | phytochrome A-associated F-box protein, putati...   369   e-102
Medtr7g012790.3 | circadian clock coupling factor ZGT | HC | chr...    51   1e-06
Medtr7g012790.1 | circadian clock coupling factor ZGT | HC | chr...    51   1e-06
Medtr7g012790.4 | circadian clock coupling factor ZGT | HC | chr...    51   1e-06
Medtr7g012790.5 | circadian clock coupling factor ZGT | HC | chr...    51   1e-06

>Medtr8g058520.1 | phytochrome A-associated F-box protein, putative
           | HC | chr8:20141328-20140414 | 20130731
          Length = 304

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/313 (61%), Positives = 221/313 (70%), Gaps = 12/313 (3%)

Query: 3   LFSALTDDIVLNIFAKLEDDPRDWARLSCVCTRFSSLITDFCWKNKCSRSIPPDLLSATD 62
           + S LTDDI+L I  K+E+DPRDWARLSCV T+ +SLI DFCWKNK S  IP +LL ++ 
Sbjct: 1   MLSELTDDIILKILWKVEEDPRDWARLSCVSTKLNSLIHDFCWKNKSSIIIPSELLLSSS 60

Query: 63  PPLSLHKLCLCCPGLLHAGLLFDTSDFGLDRDLGPDHHHHXXXXXXXXXXXXXXXXXXXX 122
             LSLHKL  CCPG LHAG+LF+T+DF       PD  HH                    
Sbjct: 61  QDLSLHKLPFCCPGPLHAGILFNTADF-------PDEQHHQQPITSSSSSTTPSSSLPPQ 113

Query: 123 XE--SSGWSLFDDLFYDTVYAAXXXXXXXXXXXXXXXXXXXVVRQGVVAEARETKKRKVC 180
               SS WSL+DDL++DT+YA                     +R GVV    E KKRKV 
Sbjct: 114 TNECSSYWSLYDDLYHDTLYADSEAHHHLQQGQEQTNEEE--IRTGVVDVPPEAKKRKVN 171

Query: 181 GARGSHLATGTWNLSREQGSKLLARQFRDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFK 240
           G+  SHLATG W LSREQGSKLLARQFRDDCLYVCDWPGCVH EEKRKY LFRG+F NFK
Sbjct: 172 GSLSSHLATGKWTLSREQGSKLLARQFRDDCLYVCDWPGCVHLEEKRKYRLFRGIFMNFK 231

Query: 241 RTRVWRTIND-GNRRKLDLPCAFCACKHTWDLHSAFCLRRGFGFHDDGEPVVRAFVCDNG 299
           +TRVW+T+ND  NR+K+DL CAFC+C HTWDLHSAFCLRRGFG+HDDGEPVVRA+VCDNG
Sbjct: 232 KTRVWKTVNDISNRKKIDLACAFCSCNHTWDLHSAFCLRRGFGYHDDGEPVVRAYVCDNG 291

Query: 300 HVSGAWTDVPMYA 312
           HVSGAWTD+PMYA
Sbjct: 292 HVSGAWTDMPMYA 304


>Medtr7g108820.1 | phytochrome A-associated F-box protein, putative
           | HC | chr7:44319003-44317583 | 20130731
          Length = 304

 Score =  369 bits (948), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/313 (61%), Positives = 221/313 (70%), Gaps = 12/313 (3%)

Query: 3   LFSALTDDIVLNIFAKLEDDPRDWARLSCVCTRFSSLITDFCWKNKCSRSIPPDLLSATD 62
           + S LTDDI+L I  K+E+DPRDWARLSCV T+ +SLI DFCWKNK S  IP +LL ++ 
Sbjct: 1   MLSELTDDIILKILWKVEEDPRDWARLSCVSTKLNSLIHDFCWKNKSSIIIPSELLLSSS 60

Query: 63  PPLSLHKLCLCCPGLLHAGLLFDTSDFGLDRDLGPDHHHHXXXXXXXXXXXXXXXXXXXX 122
             LSLHKL  CCPG LHAG+LF+T+DF       PD  HH                    
Sbjct: 61  QDLSLHKLPFCCPGPLHAGILFNTADF-------PDEQHHQQPITSSSSSTTPSSSLPPQ 113

Query: 123 XE--SSGWSLFDDLFYDTVYAAXXXXXXXXXXXXXXXXXXXVVRQGVVAEARETKKRKVC 180
               SS WSL+DDL++DT+YA                     +R GVV    E KKRKV 
Sbjct: 114 TNECSSYWSLYDDLYHDTLYADSEAHHHLQQGQEQTNEEE--IRTGVVDVPPEAKKRKVN 171

Query: 181 GARGSHLATGTWNLSREQGSKLLARQFRDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFK 240
           G+  SHLATG W LSREQGSKLLARQFRDDCLYVCDWPGCVH EEKRKY LFRG+F NFK
Sbjct: 172 GSLSSHLATGKWTLSREQGSKLLARQFRDDCLYVCDWPGCVHLEEKRKYRLFRGIFMNFK 231

Query: 241 RTRVWRTIND-GNRRKLDLPCAFCACKHTWDLHSAFCLRRGFGFHDDGEPVVRAFVCDNG 299
           +TRVW+T+ND  NR+K+DL CAFC+C HTWDLHSAFCLRRGFG+HDDGEPVVRA+VCDNG
Sbjct: 232 KTRVWKTVNDISNRKKIDLACAFCSCNHTWDLHSAFCLRRGFGYHDDGEPVVRAYVCDNG 291

Query: 300 HVSGAWTDVPMYA 312
           HVSGAWTD+PMYA
Sbjct: 292 HVSGAWTDMPMYA 304


>Medtr7g012790.3 | circadian clock coupling factor ZGT | HC |
           chr7:3500195-3504070 | 20130731
          Length = 250

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 194 LSREQGSKLLARQFRDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFKRTRVWRT-INDGN 252
            SR  G   L  Q R D LYV D    +   E+     FRGVFK+F  ++V +  I+ G 
Sbjct: 123 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDIGFFRGVFKSFATSKVRKMLISKGA 182

Query: 253 RRKLDLPCAFCACKHTWDLHSAFCLRRG----FGFHDDGEPVVRAFVCDNGHVSGAWTDV 308
           +      C +C  K  W +  A  + +      G ++D    +  FVC NGH+ G  T +
Sbjct: 183 KLHQTEVCPYCKAK-LWSMQQAKMIPQSASCRLGSYEDD---IEYFVCLNGHLIGICTLL 238

Query: 309 PM 310
           P+
Sbjct: 239 PL 240


>Medtr7g012790.1 | circadian clock coupling factor ZGT | HC |
           chr7:3500186-3504137 | 20130731
          Length = 250

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 194 LSREQGSKLLARQFRDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFKRTRVWRT-INDGN 252
            SR  G   L  Q R D LYV D    +   E+     FRGVFK+F  ++V +  I+ G 
Sbjct: 123 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDIGFFRGVFKSFATSKVRKMLISKGA 182

Query: 253 RRKLDLPCAFCACKHTWDLHSAFCLRRG----FGFHDDGEPVVRAFVCDNGHVSGAWTDV 308
           +      C +C  K  W +  A  + +      G ++D    +  FVC NGH+ G  T +
Sbjct: 183 KLHQTEVCPYCKAK-LWSMQQAKMIPQSASCRLGSYEDD---IEYFVCLNGHLIGICTLL 238

Query: 309 PM 310
           P+
Sbjct: 239 PL 240


>Medtr7g012790.4 | circadian clock coupling factor ZGT | HC |
           chr7:3500186-3503074 | 20130731
          Length = 250

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 194 LSREQGSKLLARQFRDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFKRTRVWRT-INDGN 252
            SR  G   L  Q R D LYV D    +   E+     FRGVFK+F  ++V +  I+ G 
Sbjct: 123 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDIGFFRGVFKSFATSKVRKMLISKGA 182

Query: 253 RRKLDLPCAFCACKHTWDLHSAFCLRRG----FGFHDDGEPVVRAFVCDNGHVSGAWTDV 308
           +      C +C  K  W +  A  + +      G ++D    +  FVC NGH+ G  T +
Sbjct: 183 KLHQTEVCPYCKAK-LWSMQQAKMIPQSASCRLGSYEDD---IEYFVCLNGHLIGICTLL 238

Query: 309 PM 310
           P+
Sbjct: 239 PL 240


>Medtr7g012790.5 | circadian clock coupling factor ZGT | HC |
           chr7:3500186-3503074 | 20130731
          Length = 250

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 9/122 (7%)

Query: 194 LSREQGSKLLARQFRDDCLYVCDWPGCVHSEEKRKYMLFRGVFKNFKRTRVWRT-INDGN 252
            SR  G   L  Q R D LYV D    +   E+     FRGVFK+F  ++V +  I+ G 
Sbjct: 123 FSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDIGFFRGVFKSFATSKVRKMLISKGA 182

Query: 253 RRKLDLPCAFCACKHTWDLHSAFCLRRG----FGFHDDGEPVVRAFVCDNGHVSGAWTDV 308
           +      C +C  K  W +  A  + +      G ++D    +  FVC NGH+ G  T +
Sbjct: 183 KLHQTEVCPYCKAK-LWSMQQAKMIPQSASCRLGSYEDD---IEYFVCLNGHLIGICTLL 238

Query: 309 PM 310
           P+
Sbjct: 239 PL 240