Miyakogusa Predicted Gene

Lj0g3v0108459.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0108459.2 Non Characterized Hit- tr|H2ZU33|H2ZU33_LATCH
Uncharacterized protein OS=Latimeria chalumnae
GN=FBXO,25.19,2e-17,ApaG-like,ApaG domain; F-box domain,F-box domain,
cyclin-like; FBOX,F-box domain, cyclin-like; APAG,,CUFF.6249.2
         (360 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g068130.1 | F-box protein SKIP16 | HC | chr4:25445957-2544...   316   2e-86
Medtr4g068130.2 | F-box protein SKIP16 | HC | chr4:25445957-2544...   258   5e-69
Medtr4g105610.1 | CO2+/MG2+ efflux protein ApaG | HC | chr4:4385...    51   2e-06

>Medtr4g068130.1 | F-box protein SKIP16 | HC |
           chr4:25445957-25441223 | 20130731
          Length = 443

 Score =  316 bits (810), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 164/184 (89%)

Query: 177 QDAMLLWFEEHGRRLQQGFIKLHEEGNNRSINLFPEEPPLCSTAITNGVQVRASALFVPE 236
           QDAMLLW EEHGRRLQ+GFIKL EEGN +SI+LFPEE P+CSTA+TNGVQ+RASAL VPE
Sbjct: 260 QDAMLLWLEEHGRRLQRGFIKLLEEGNAKSISLFPEESPVCSTAVTNGVQIRASALLVPE 319

Query: 237 LSDLQDDLEKYLFAYSIRMSLHPEGCIINGMSFSSCQLHWRHWIIRANDIVVSDVNGEAV 296
             DLQ D EKYLF+YSIRMSL P+GC+INGMS SSCQL+WRHWIIRAND VVSDVNGEAV
Sbjct: 320 GVDLQGDREKYLFSYSIRMSLQPQGCVINGMSHSSCQLYWRHWIIRANDAVVSDVNGEAV 379

Query: 297 IGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSFTFVPGRLANPKGDSFLATVDRFPIQLP 356
           IGM+PLLRPG +EFVYQSC+ LPTSSGS+EGSFTFVPGRL +P+GD FL  V  FP+QLP
Sbjct: 380 IGMYPLLRPGDKEFVYQSCSPLPTSSGSIEGSFTFVPGRLVDPRGDPFLVQVAHFPLQLP 439

Query: 357 DYIF 360
           DYIF
Sbjct: 440 DYIF 443



 Score =  258 bits (658), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 119/174 (68%), Positives = 136/174 (78%), Gaps = 1/174 (0%)

Query: 2   MGLETVVDLAIHDVLRRLSPEDIARVACVSKKLRSLAFDDDSLWLTICISELDLHQPLDH 61
           M LE+V DLAIH+++  L PEDIAR++CVS + +S    DDSLW  IC  EL L QP+DH
Sbjct: 1   MDLESVGDLAIHEIMENLKPEDIARISCVSNRFKSFT-SDDSLWSKICFRELSLTQPIDH 59

Query: 62  LGNPLPSFKATYQAWREAFAMYPWSLVKRVKQCWDKLKTWLVNNFPEAEATLCKGASEAE 121
           LGNP PSFK  YQ WREAF MYPWSLVKRVK+CWD +KTWL NNFPEA+ TLC+GASE E
Sbjct: 60  LGNPTPSFKEAYQTWREAFVMYPWSLVKRVKRCWDNIKTWLTNNFPEAKETLCEGASEVE 119

Query: 122 ILELENVLEVKLPLPTRILYRFHNGQEIANGDLESDTFGSSLGLIGGYSFYSHL 175
           I ELE+VL VKLPLPTRILYRFHNGQEI   D ++ T   SLG+IGGYSFY H 
Sbjct: 120 IQELEDVLNVKLPLPTRILYRFHNGQEIEKHDHDTSTSDISLGIIGGYSFYDHF 173


>Medtr4g068130.2 | F-box protein SKIP16 | HC |
           chr4:25445957-25441244 | 20130731
          Length = 328

 Score =  258 bits (660), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 119/174 (68%), Positives = 136/174 (78%), Gaps = 1/174 (0%)

Query: 2   MGLETVVDLAIHDVLRRLSPEDIARVACVSKKLRSLAFDDDSLWLTICISELDLHQPLDH 61
           M LE+V DLAIH+++  L PEDIAR++CVS + +S    DDSLW  IC  EL L QP+DH
Sbjct: 1   MDLESVGDLAIHEIMENLKPEDIARISCVSNRFKSFT-SDDSLWSKICFRELSLTQPIDH 59

Query: 62  LGNPLPSFKATYQAWREAFAMYPWSLVKRVKQCWDKLKTWLVNNFPEAEATLCKGASEAE 121
           LGNP PSFK  YQ WREAF MYPWSLVKRVK+CWD +KTWL NNFPEA+ TLC+GASE E
Sbjct: 60  LGNPTPSFKEAYQTWREAFVMYPWSLVKRVKRCWDNIKTWLTNNFPEAKETLCEGASEVE 119

Query: 122 ILELENVLEVKLPLPTRILYRFHNGQEIANGDLESDTFGSSLGLIGGYSFYSHL 175
           I ELE+VL VKLPLPTRILYRFHNGQEI   D ++ T   SLG+IGGYSFY H 
Sbjct: 120 IQELEDVLNVKLPLPTRILYRFHNGQEIEKHDHDTSTSDISLGIIGGYSFYDHF 173



 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 47/51 (92%)

Query: 177 QDAMLLWFEEHGRRLQQGFIKLHEEGNNRSINLFPEEPPLCSTAITNGVQV 227
           QDAMLLW EEHGRRLQ+GFIKL EEGN +SI+LFPEE P+CSTA+TNGVQV
Sbjct: 260 QDAMLLWLEEHGRRLQRGFIKLLEEGNAKSISLFPEESPVCSTAVTNGVQV 310


>Medtr4g105610.1 | CO2+/MG2+ efflux protein ApaG | HC |
           chr4:43850627-43846537 | 20130731
          Length = 266

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)

Query: 217 CST-AITNGVQVRASALFVPELSDLQDDLEKYLFAYSIRMSLHPEGCIINGMSFSSCQLH 275
           CS+ A T GV+V+  ++++   S     L  Y FAY IR         I   S  + QL 
Sbjct: 132 CSSDATTLGVRVQVRSVYIEGRSQPSKGL--YFFAYRIR---------ITNNSDDTVQLL 180

Query: 276 WRHWIIRANDIVVSDVNGEAVIGMFPLLRPGAEEFVYQSCTYLPTSSGSVEGSFTFVP-G 334
            RHWII   +    +V G  V+G  P+L P    F Y S   L T +G +EG +  +   
Sbjct: 181 RRHWIITDANGRSENVRGIGVVGEQPVLLPRT-SFEYSSACPLSTPNGRMEGEYEMIHVD 239

Query: 335 RLANPKGDSFLA 346
           ++ +P  ++ +A
Sbjct: 240 KVGSPSFNAIIA 251